DY263238

Overview
NameDY263238
Unique NameDY263238
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1279
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of DY263238 vs. ExPASy Swiss-Prot
Match: CAF40_YEAST (Protein CAF40 OS=Saccharomyces cerevisiae GN=CAF40 PE=1 SV=1)

HSP 1 Score: 294.278 bits (752), Expect = 1.048e-78
Identity = 153/247 (61.94%), Postives = 183/247 (74.09%), Query Frame = 3 
Query:  177 HLVLDLSNPDLRENALLELSKNKELFQDLAPFVWNSFGTIAALIQEIVSIYPVLSPPNLTPAQSNRVCNALALLQCVASHPDTRMLFLNAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKVDDTEVISFLLSTEIIPLCLRTMEMGSELSKTVATFIVQKILLDDVGLDYICTTAERFFAVGRVLGNMVAAL-AEQPSSRLLKHIIRCYLRLSDNPRACDALRSCLPDMLRDAPLSSCLRED 914
            H +  L+    +E ALLEL + +E F DLA  +W+SFG + +L+ EI+S+YP+L P  L+   SNRVCNAL LLQCVASHP+T+ LFL AHIPL+L+PFLNTTS+ R FEYLRLTSLGVIGALVK D  +VI+FLL T+I+PLCLR ME  SELSKTVA FI+QKILLDDVGL YIC T ERF+AV  VL +MV  L    P  RLLKHIIRCYLRLSD+  A   L+  LP  LRD   +  LR+D
Sbjct:  108 HWICQLTYGPQKEQALLELGRKREQFDDLAVVLWSSFGVMTSLLNEIISVYPMLQPQMLSNNLSNRVCNALVLLQCVASHPETKHLFLQAHIPLFLFPFLNTTSRQRTFEYLRLTSLGVIGALVKNDSQDVITFLLRTDIVPLCLRIMESSSELSKTVAIFILQKILLDDVGLQYICATLERFYAVTNVLKDMVEHLTVSTPPGRLLKHIIRCYLRLSDDLEARRLLKIVLPAKLRDNTFTEVLRDD 354
The following BLAST results are available for this feature:
BLAST of DY263238 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
CAF40_YEAST1.048e-7861.94Protein CAF40 OS=Saccharomyces cerevisiae GN=CAF40... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA11AG10RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY263238 ID=DY263238; Name=DY263238; organism=Citrus clementina; type=EST; length=1279bp
CCGTGTAGGAGACTTGCAGAAAAAGCGCAAGGAAGTTGAGTGAGAGAGAG
AGAATGGCGAATCTGCCACAGTCGCTGTCGATGAACGTGCCGTTCGGCGG
TGGGCCCAGCGCTTCGAGCCCTAGCGCCCCTGCAGGAGCTGGAGCGAACA
AGGACCGGAAAATGGCGTCAGCTGAACATTTGGTACTCGACCTAAGCAAT
CCTGATTTAAGAGAAAACGCTCTTCTTGAATTATCAAAGAACAAGGAATT
ATTTCAAGATTTGGCTCCTTTCGTGTGGAATTCTTTTGGTACTATAGCTG
CACTCATACAGGAGATAGTATCAATATACCCTGTTCTATCACCACCAAAC
CTTACTCCTGCACAATCAAACCGAGTTTGCAATGCACTTGCTCTTCTTCA
GTGTGTAGCCTCCCATCCAGACACAAGGATGTTGTTTCTCAATGCTCATA
TACCATTGTATTTGTACCCTTTCCTGAATACAACAAGCAAGTCAAGGCCC
TTTGAGTACTTGAGACTTACAAGCTTAGGTGTTATTGGTGCCCTGGTGAA
GGTTGATGACACAGAAGTTATTAGCTTCCTTCTTTCAACAGAAATAATCC
CACTCTGCCTGCGGACCATGGAGATGGGCAGCGAGTTGTCAAAAACAGTT
GCGACATTTATAGTGCAGAAAATATTGTTAGATGATGTGGGCTTGGATTA
TATTTGTACTACAGCAGAGAGGTTTTTTGCAGTAGGGCGAGTTTTGGGGA
ACATGGTTGCGGCACTTGCTGAGCAACCTTCTTCGCGGCTGCTCAAGCAT
ATTATTCGATGTTATCTGCGATTGTCAGACAATCCGAGGGCTTGTGATGC
TCTAAGAAGTTGCCTTCCAGACATGTTAAGAGATGCCCCCCTCAGTAGTT
GCCTTCGTGAGGATCAACAACAAGGAGATGGCTGGCACAGCTGCTTCATA
ATGTTGGAGTCAATCGAGTTCCACACTTCAGGCTGGAACAGCATTTGATC
ATATGCTGGTGGACTGAATTGGAACCAAACAATTTTTTCATCCATTTGAT
GCCCATAGTTGGCCGTTCAAAACGGCCCTATCTAGGCTGAATCAAAACTT
TTTCCCCTTTTTGTTTTTGTTCATTTTCGGGGGGTTTAGGGTCGGGAAAT
TAAGGGGGGGGTTAAAAAAAAAAAAACGGGGCGGGGGGGGGAAAAACAAA
AAAAGTTGGGTTTTAAACCCCCCGGAAATTTACCTTAAAAATTGGTTCCT
CCTGGCCCCCCTTCTTTTTTTTTGGGCGG
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