DY263240

Overview
NameDY263240
Unique NameDY263240
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length990
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY263240 vs. ExPASy Swiss-Prot
Match: GGPP6_ARATH (Geranylgeranyl pyrophosphate synthetase 6, mitochondrial OS=Arabidopsis thaliana GN=GGPP6 PE=2 SV=2)

HSP 1 Score: 181.03 bits (458), Expect = 9.105e-45
Identity = 104/253 (41.11%), Postives = 150/253 (59.29%), Query Frame = 3
Query:  267 QIYESMRYSVLAKGTKRAPPVMCVAACELFGVNRIAAFPTACALEMVHAASLIHDDLPCMDDDPSRRGQPSNHTVYGVDIAILAGDALFPLGFQHIVSHTPPHLVPEPRVLRVIAEIARAVGSTGMAAGQFLDLEGEP----------NLVEFVQEKKFGEMSECSAVCGGFLAGADDDEIQSLRRYGRAVGVLYQVVDDILEAKAQTPRDEEKRKRRGRAMWHS-------TGVEKAMEVAEELRSKAKEEL 974
            +++++MRY++L  G KR  P++C+ ACEL G     A P ACA+EM+HAASLI DDLPCMDDD  RRG+P+NH V+G   +ILA +AL  L  +  ++ T   +  E RVLR + E+ARAVG+ G+ AGQ  DL GE             +E +   K   + E +AV G  + G  D+EI+ L+ Y R VG+++QV+DD+L+   +T   EE  K  G+ +           GV+ A E A+ L  +A+E L
Sbjct:   66 EVHKAMRYTLLPGG-KRVRPMLCLVACELVGGQESTAMPAACAVEMIHAASLILDDLPCMDDDSLRRGKPTNHKVFGEKTSILASNALRSLAVKQTLASTSLGVTSE-RVLRAVQEMARAVGTEGLVAGQAADLAGERMSFKNEDDELRYLELMHVHKTAVLVEAAAVVGAIMGGGSDEEIERLKSYARCVGLMFQVMDDVLD---ETKSSEELGKTAGKDLITGKLTYPKVMGVDNAREYAKRLNREAQEHL 313          
BLAST of DY263240 vs. ExPASy Swiss-Prot
Match: ISPA_BACSU (Geranyltranstransferase OS=Bacillus subtilis GN=ispA PE=3 SV=2)

HSP 1 Score: 152.525 bits (384), Expect = 3.468e-36
Identity = 87/239 (36.40%), Postives = 134/239 (56.07%), Query Frame = 3
Query:  204 TTLITEIDQNLEKAITV-----KYPEQIYESMRYSVLAKGTKRAPPVMCVAACELFGVNRIAAFPTACALEMVHAASLIHDDLPCMDDDPSRRGQPSNHTVYGVDIAILAGDALFPLGFQHIVSHTPPHLVPEPRVLRVIAEIARAVGSTGMAAGQFLDLEGEPNLV-----EFVQEKKFGEMSECSAVCGGFLAGADDDEIQSLRRYGRAVGVLYQVVDDILEAKAQTPRDEEKRKRR 890
            T+ + +  + +E  ++V       P+ + +SM YS+ A G KR  P++ +A    +G +     P  CA+EM+H  SLIHDDLPCMDDD  RRG+P+NH V+G   A+LAGD L    F+ I SH    +  E R LR++ E+  A G+ GM  GQ  D+E E   V     E + E+K  ++     + G  LA A +++I++LR +   +G+ +Q+ DDIL+ +      EEK  +R
Sbjct:    6 TSFLADRKKTIENQLSVYTEKLDMPDSLKKSMLYSLQAGG-KRLRPLIVLAVLNAYGKSEKDGIPVGCAVEMIHTYSLIHDDLPCMDDDDLRRGKPTNHKVFGEATAVLAGDGLLTESFKLITSHVSDEVSAEKR-LRLVNELISAAGTEGMVGGQVADMEAENRQVTLEELESIHERKTAKLLGFCVIAGAILADAPEEDIETLRTFSSHIGIGFQIRDDILDLEG----SEEKIGKR 238          
BLAST of DY263240 vs. ExPASy Swiss-Prot
Match: ISPA_BACST (Geranyltranstransferase OS=Bacillus stearothermophilus PE=1 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 7.231e-34
Identity = 83/221 (37.56%), Postives = 125/221 (56.56%), Query Frame = 3
Query:  213 ITEIDQNLEKAIT-----VKYPEQIYESMRYSVLAKGTKRAPPVMCVAACELFGVNRIAAFPTACALEMVHAASLIHDDLPCMDDDPSRRGQPSNHTVYGVDIAILAGDALFPLGFQHIVSHTPPHLVPEPRVLRVIAEIARAVGSTGMAAGQFLDLEGEPNL-----VEFVQEKKFGEMSECSAVCGGFLAGADDDEIQSLRRYGRAVGVLYQVVDDILE 845
            + E  Q +E A++     ++ P ++ ++M YS+ A G KR  P++ ++     G +     P ACA+EM+H  SLIHDDLP MD+D  RRG+P+NH V+G  +AILAGD L    FQ I       + P  R LR+I  +A+A G  GM AGQ  D+EGE        +E++   K G+M + S   G  + GAD  + + L  +   +G+ +Q+ DDIL+
Sbjct:   10 LNEQKQAVETALSRYIERLEGPAKLKKAMAYSLEAGG-KRIRPLLLLSTVRALGKDPAVGLPVACAIEMIHTYSLIHDDLPSMDNDDLRRGKPTNHKVFGEAMAILAGDGLLTYAFQLITEIDDERIPPSVR-LRLIERLAKAAGPEGMVAGQAADMEGEGKTLTLSELEYIHRHKTGKMLQYSVHAGALIGGADARQTRELDEFAAHLGLAFQIRDDILD 228          
BLAST of DY263240 vs. ExPASy Swiss-Prot
Match: ISPA_AQUAE (Geranyltranstransferase OS=Aquifex aeolicus GN=ispA PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 1.508e-31
Identity = 83/245 (33.88%), Postives = 132/245 (53.88%), Query Frame = 3
Query:  219 EIDQNLEKAITVKYPEQIYESMRYSVLAKGTKRAPPVMCVAACELFGVNRIAAFPTACALEMVHAASLIHDDLPCMDDDPSRRGQPSNHTVYGVDIAILAGDALFPLGFQHIVSHTPPHLVPEPRVLRVIAEIARAVGSTGMAAGQFLDLEGEPNLVEFVQEKKFGEMSECSAVCGGFLAGADDDEIQSLRRYGRAVGVLYQVVDDILEAKAQTPRDEEKRKRRGRAMWHSTGVEKAMEVAEELR 953
            +I++ L + +  + PE++ E+M+Y  L KG KR  P+  VA     G N   A      +E++H  SLIHDDLPCMD+D  RRG P+ H  +G  +A+LAGDAL    F+ +        +    +L +   IA+  GS GM  GQ LD++G  +L E V  KK G + E   +CG  +A    ++++ +   GR VG+L+Q+VDD L+      +  E  K   + ++     ++  + ++ELR
Sbjct:   10 KIEKRLNEILKPEGPEELIEAMKYYPLQKG-KRIRPLFTVAVASALGGNEDDAITVGSGIELIHNYSLIHDDLPCMDNDVWRRGLPTCHIKFGEAMALLAGDALLTYTFEVLSQRENYKTLSCEEILEINKIIAQKAGSNGMVGGQVLDIKGYEDLYE-VSVKKTGALFEACFMCGAVVA-KRREKLKEMESIGRKVGLLFQMVDDYLDKDGFYEKLGECLKEEIKKLYEELKEKEIFKESQELR 251          
BLAST of DY263240 vs. ExPASy Swiss-Prot
Match: ISPA_ECOLI (Geranyltranstransferase OS=Escherichia coli (strain K12) GN=ispA PE=1 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 2.253e-27
Identity = 87/249 (34.94%), Postives = 127/249 (51.00%), Query Frame = 3
Query:  270 IYESMRYSVLAKGTKRAPPVMCVAACELFGVNRIAAFPTACALEMVHAASLIHDDLPCMDDDPSRRGQPSNHTVYGVDIAILAGDALFPLGFQHIVSHTPPHLVPEPRVLRVIAEIARAVGSTGMAAGQFLDLEGEP-----NLVEFVQEKKFGEMSECSAVCGGFLAGADDDE-IQSLRRYGRAVGVLYQVVDDILEAKAQTPRDEEKRKRRGRAMWHST-----GVEKAMEVAEELRSKAKEELDRV 983
            + E+M+Y  L  G KR  P +  A   +FGV+       A A+E +HA SLIHDDLP MDDD  RRG P+ H  +G   AILAGDAL  L F  +     P +    R+  +I+E+A A G  GM  GQ LDL+ E      + +E +   K G +   +   G   AG      +  L +Y  ++G+ +QV DDIL+    T     KR+   + +  ST     G+E+A + A +L   A++ L ++
Sbjct:   32 VVETMQYGALLGG-KRLRPFLVYATGHMFGVSTNTLDAPAAAVECIHAYSLIHDDLPAMDDDDLRRGLPTCHVKFGEANAILAGDALQTLAFSILSDADMPEVSDRDRI-SMISELASASGIAGMCGGQALDLDAEGKHVPLDALERIHRHKTGALIRAAVRLGALSAGDKGRRALPVLDKYAESIGLAFQVQDDILDVVGDT-ATLGKRQGADQQLGKSTYPALLGLEQARKKARDLIDDARQSLKQL 277          
BLAST of DY263240 vs. ExPASy Swiss-Prot
Match: ISPA_MICLU (Geranyltranstransferase OS=Micrococcus luteus GN=fps PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 2.943e-27
Identity = 79/212 (37.26%), Postives = 118/212 (55.66%), Query Frame = 3
Query:  237 EKAITVKYPEQ--IYESMRYSVLAKGTKRAPPVMCVAACELFGVNRIAAFPTACALEMVHAASLIHDDLPCMDDDPSRRGQPSNHTVYGVDIAILAGDALFPLGFQHIVSHTPPHLVPEPRVLRVIAEIARAVGSTGMAAGQFLDLEGEP-----NLVEFVQEKKFGEMSECSAVCGGFLAGADDDEIQSLRRYGRAVGVLYQVVDDILEAK 851
            E  +   +P Q  ++E++ YS L+ G KR  P++ +   +  G N     P   ALEM+H  SLIHDDLP MD+D  RRG+ +NH  +    AILAGDAL    FQ I++     L  E + L +I  ++ A GS GM  GQ LD++GE      N +E +   K GE+   + V  G +   +D +I+ L   G+ VG+++Q+ DDIL+ +
Sbjct:   18 ESLLNKYHPAQSRLHEAINYS-LSAGGKRIRPLLVLTTLDSLGGNAHDGLPFGIALEMIHTYSLIHDDLPAMDNDDYRRGKLTNHKRFDEATAILAGDALLTDAFQCILN---TQLNAEIK-LSLINLLSTASGSNGMVYGQMLDMQGEHKTLTLNELERIHIHKTGELIRAAIVSAGIIMNFNDAQIEQLNIIGKNVGLMFQIKDDILDVE 224          
BLAST of DY263240 vs. ExPASy Swiss-Prot
Match: ISPA_BUCAP (Geranyltranstransferase OS=Buchnera aphidicola subsp. Schizaphis graminum GN=ispA PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 5.019e-27
Identity = 86/245 (35.10%), Postives = 133/245 (54.29%), Query Frame = 3
Query:  270 IYESMRYSVLAKGTKRAPPVMCVAACELFGVNRIAAFPTACALEMVHAASLIHDDLPCMDDDPSRRGQPSNHTVYGVDIAILAGDALFPLGFQHIVSHTPPHLVPEPRVLRVIAEIARAVGSTGMAAGQFLDLEGEPNLV-----EFVQEKKFGEMSECSAVCGGFLAGADDDEIQ-SLRRYGRAVGVLYQVVDDILEAKAQTPRDEEKRKRRGRAMWHSTGVEKAMEVAEELRSKAKEELDRVK 986
            ++ +M+YS L+ G KR    +  A  E F VN  A    + A+E+VH+ SLIHDDLPC+D+D  RRG+ S H  YG + A+LAGDAL  L F +I+S++    V +   L++IAE + A+G +GM  GQ LDLE E   +     E +   K   +  CS     F +     E+   L ++  ++G+ +Q+ DDIL+ K    + E KR +         G++K+    +EL  +A   L+ +K
Sbjct:   32 LFRAMKYSTLSGG-KRLRACLIYATGETFQVNIAALDVISAAVELVHSYSLIHDDLPCIDNDYFRRGKISCHIKYGENFALLAGDALQGLAF-NILSNSNMPGVHDSIRLKMIAEFSNAIGYSGMCIGQMLDLEKERKKINISELEKINLYKTAFLIRCSIRLAYFASNNFSKEVLFILDKFSVSIGLAFQIQDDILDLKNDIKKLESKRNKTKNTYPLLIGLKKSKIKIKELYKEAFFTLEILK 274          
BLAST of DY263240 vs. ExPASy Swiss-Prot
Match: ISPA_HAEIN (Geranyltranstransferase OS=Haemophilus influenzae GN=ispA PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 5.194e-24
Identity = 85/251 (33.86%), Postives = 129/251 (51.39%), Query Frame = 3
Query:  270 IYESMRYSVLAKGTKRAPPVMCVAACELFGVNRIAAFPTACALEMVHAASLIHDDLPCMDDDPSRRGQPSNHTVYGVDIAILAGDALFPLGFQHIVSHTPPHLVPEPRVLRVIAEIARAVGSTGMAAGQFLDLEGEPNLV-----EFVQEKKFGEMSECSAVCGGFLAG---ADDDEIQSLRRYGRAVGVLYQVVDDILEAKAQTPRDEEKRKRRGRAMWHST-----GVEKAMEVAEELRSKAKEELDRV 983
            + E+M+Y++L  G KR  P +  A  ++ G  +      A A+E +HA SLIHDDLP MDDD  RRG P+ H  +    AILAGDAL    F+ I++ TP   +   + L +I  +A+  G  GM  GQ LDL  E   +     E +   K G +   +A+  GF+      D    QSL +Y  A+G+ +QV DDIL+ +  +  +  K+      +  ST     G+  A + A++L   A  EL+++
Sbjct:   33 LLEAMKYALLLGG-KRVRPFLVYATGQMLGAEKQTLDYAAAAIEAIHAYSLIHDDLPAMDDDNLRRGHPTCHIQFDEATAILAGDALQSFAFE-ILTKTPN--ISTEQKLALIQILAQGAGVQGMCLGQSLDLISEHKQISLSELELIHRNKTGALL-IAALKLGFICSPHFTDKRLEQSLTQYAEAIGLAFQVQDDILDIEGDS-AEIGKQVGADLDLDKSTYPKLLGLSGAKQKAQDLYQSALSELEKI 277          
BLAST of DY263240 vs. ExPASy Swiss-Prot
Match: ISPA_BUCAI (Geranyltranstransferase OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=ispA PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.974e-23
Identity = 77/245 (31.43%), Postives = 136/245 (55.51%), Query Frame = 3
Query:  270 IYESMRYSVLAKGTKRAPPVMCVAACELFGVNRIAAFPTACALEMVHAASLIHDDLPCMDDDPSRRGQPSNHTVYGVDIAILAGDALFPLGFQHIVSHTPPHLVPEPRVLRVIAEIARAVGSTGMAAGQFLDLEGEP---NL--VEFVQEKKFGEMSECSAVCGGFLAGADDDEIQS-LRRYGRAVGVLYQVVDDILEAKAQTPRDEEKRKRRGRAMWHSTGVEKAMEVAEELRSKAKEELDRVK 986
            + ++M+YSV + G+KR    +  +  ++F VN       + A+E +H+ SLIHDDLPCMD+D  RRG+ S H  YG   ++LAGDAL  L F +I+S++    V   + +++I+E++ ++GS+GM  GQ LDLE E    NL  +E +   K   +   +     F +      I S L  +  ++G+ +Q+ DDIL+ K  + + + K+  +        G++++ +  ++L  K+   L+ +K
Sbjct:   32 LLKAMKYSVFS-GSKRLRSSLIYSTGDVFKVNITTLDVISTAIEFIHSYSLIHDDLPCMDNDNFRRGKISCHVKYGESTSLLAGDALQSLAF-NILSNSFMPNVSNLKRIKMISELSYSIGSSGMCMGQNLDLEAEKKDVNLSELEIINLYKTSFLMRSAVRLVYFSSNNFSKSILSILDLFSISIGLAFQIQDDILDFKKDSVKTDNKKIIKKHTYPLIIGLDESRKKIKQLHKKSFLALNSLK 274          
BLAST of DY263240 vs. ExPASy Swiss-Prot
Match: CRTE_PANAN (Geranylgeranyl pyrophosphate synthetase OS=Pantoea ananas GN=crtE PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 5.743e-23
Identity = 76/230 (33.04%), Postives = 118/230 (51.30%), Query Frame = 3
Query:  210 LITEIDQNLEKAITVKYPEQIY-ESMRYSVLAKGTKRAPPVMCVAACEL-FGVNRIAAFPTACALEMVHAASLIHDDLPCMDDDPSRRGQPSNHTVYGVDIAILAGDALFPLGFQHIVSHTPPHLVPEPRVLRVIAEIARAVGSTGMAAGQFLDL-EGE-PNLVEFV---QEKKFGEMSECSAVCGGFLAGADDDEIQSLRRYGRAVGVLYQVVDDILEAKAQTPRDEEK 878
            L+ +ID+ L++ + V+    +   +MR   LA G +  P ++ + A +L   V+       ACA+EMVHAASLI DD+PCMDD   RRG+P+ H+ YG  +AILA  AL    F  I       L P  +  R ++E++ A+G  G+  GQF DL EG+ P   E +      K   +   S      +A A  +    L R+   +G  +Q++DD+ +    T +D  +
Sbjct:   19 LLADIDRRLDQLLPVEGERDVVGAAMREGALAPGKRIRPMLLLLTARDLGCAVSHDGLLDLACAVEMVHAASLILDDMPCMDDAKLRRGRPTIHSHYGEHVAILAAVALLSKAFGVIAD--ADGLTPLAK-NRAVSELSNAIGMQGLVQGQFKDLSEGDKPRSAEAILMTNHFKTSTLFCASMQMASIVANASSEARDCLHRFSLDLGQAFQLLDDLTDGMTDTGKDSNQ 245          
The following BLAST results are available for this feature:
BLAST of DY263240 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 38
Match NameE-valueIdentityDescription
GGPP6_ARATH9.105e-4541.11Geranylgeranyl pyrophosphate synthetase 6, mitocho... [more]
ISPA_BACSU3.468e-3636.40Geranyltranstransferase OS=Bacillus subtilis GN=is... [more]
ISPA_BACST7.231e-3437.56Geranyltranstransferase OS=Bacillus stearothermoph... [more]
ISPA_AQUAE1.508e-3133.88Geranyltranstransferase OS=Aquifex aeolicus GN=isp... [more]
ISPA_ECOLI2.253e-2734.94Geranyltranstransferase OS=Escherichia coli (strai... [more]
ISPA_MICLU2.943e-2737.26Geranyltranstransferase OS=Micrococcus luteus GN=f... [more]
ISPA_BUCAP5.019e-2735.10Geranyltranstransferase OS=Buchnera aphidicola sub... [more]
ISPA_HAEIN5.194e-2433.86Geranyltranstransferase OS=Haemophilus influenzae ... [more]
ISPA_BUCAI1.974e-2331.43Geranyltranstransferase OS=Buchnera aphidicola sub... [more]
CRTE_PANAN5.743e-2333.04Geranylgeranyl pyrophosphate synthetase OS=Pantoea... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA11AG12RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY263240 ID=DY263240; Name=DY263240; organism=Citrus clementina; type=EST; length=990bp
CACAAACGCTTCAATTCAACCTGTACTCCAAAACACCAAAGAAACAATTT
TTTTAAAAAAAAAAAATGATTTTTTCATCAGCATTATTAGCAAACCCGCC
ATGTGTTTGCCTTCCAAGAAAATTCCCCGTTCGTTGTTCGTCTTTACCAG
TCTCTGCTGCAAGCCAGTTGAGATCCACCCAGTTTGATTTGAAGACTTAC
TGGACTACCCTTATTACTGAAATTGATCAGAATTTGGAAAAAGCAATCAC
AGTTAAGTACCCAGAGCAGATCTATGAATCCATGAGATATTCGGTGTTAG
CCAAGGGAACTAAGCGGGCGCCGCCTGTCATGTGTGTGGCAGCTTGCGAG
CTCTTTGGTGTTAATCGGATTGCAGCTTTTCCCACAGCTTGCGCTCTTGA
AATGGTCCATGCTGCTTCATTGATTCATGACGATCTTCCTTGCATGGATG
ATGACCCATCTCGCCGAGGTCAGCCCTCAAACCACACAGTCTATGGTGTT
GACATAGCTATCCTTGCAGGGGATGCACTCTTCCCCCTTGGTTTCCAACA
CATTGTGTCCCACACACCCCCCCATCTCGTGCCTGAGCCCCGTGTCCTTC
GGGTGATTGCTGAGATTGCCCGTGCTGTGGGGTCCACTGGCATGGCTGCC
GGGCAGTTCCTTGATCTTGAGGGTGAACCCAACTTGGTTGAATTTGTCCA
GGAGAAAAAATTCGGTGAAATGAGTGAGTGCTCAGCGGTGTGTGGTGGGT
TCTTGGCTGGTGCAGATGATGATGAGATACAGAGCTTGCGGAGGTATGGA
AGAGCTGTTGGGGTATTATACCAAGTAGTTGATGACATATTGGAAGCAAA
GGCACAGACTCCAAGAGATGAAGAGAAGAGAAAAAGAAGGGGAAGAGCTA
TGTGGCATTCTACGGGGGTTGAGAAGGCTATGGAGGTGGCTGAGGAACTT
AGAAGCAAAGCTAAAGAGGAATTGGATAGGGTCAAGAATT
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