DY263240
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DY263240 vs. ExPASy Swiss-Prot
Match: IDSA_METTM (Bifunctional short chain isoprenyl diphosphate synthase OS=Methanobacterium thermoautotrophicum (strain Marburg / DSM 2133) GN=idsA PE=1 SV=3) HSP 1 Score: 105.531 bits (262), Expect = 4.862e-22 Identity = 66/213 (30.99%), Postives = 110/213 (51.64%), Query Frame = 3 Query: 225 DQNLEKAITVKYPEQIYESMRYSVLAKGTKRAPPVMCVAACELFGVNRIAAFPTACALEMVHAASLIHDDLPCMDDDPSRRGQPSNHTVYGVDIAILAGDALFPLGFQHIVSHTPPHLVPEPRVLRVIAEIARAVGSTGMAAGQFLDLEGEPNLVEFVQE------KKFGEMSECSAVCGGFLAGADDDEIQSLRRYGRAVGVLYQVVDDILE 845 D+ + + I+ P+ + ++ + + A G K+ P + + +CE G N A A A+E++H SLIHDD+ MDDD RRG+PS H ++G +AILAGD LF F+ ++ + V + L V+ + + GQ LD+ E L E KK + + G + GA + E+++L YG+ +G+ +Q+ DD L+ Sbjct: 16 DKRIMECISDITPDTLLKASEHLITAGG-KKIRPSLALLSCEAVGGNPEDAAGVAAAIELIHTFSLIHDDI--MDDDEMRRGEPSVHVIWGEPMAILAGDVLFSKAFEAVIRNGDSERVKD--ALAVVVD-----SCVKICEGQALDMGFEERLDVTEDEYMEMIYKKTAALIAAATKAGAIMGGASEREVEALEDYGKFIGLAFQIHDDYLD 218
BLAST of DY263240 vs. ExPASy Swiss-Prot
Match: GGPS_SULAC (Geranylgeranyl pyrophosphate synthetase OS=Sulfolobus acidocaldarius GN=gds PE=3 SV=1) HSP 1 Score: 104.76 bits (260), Expect = 8.293e-22 Identity = 65/221 (29.41%), Postives = 118/221 (53.39%), Query Frame = 3 Query: 198 YWTTLITEIDQNLEKAITVKYPEQIYESMRYSVLAKGTKRAPPVMCVAACELFGVNRIAAFPTACALEMVHAASLIHDDLPCMDDDPSRRGQPSNHTVYGVDIAILAGDALFPLGFQHIVSHTPPHLVPEPRVLRVIAEIARAVGSTGMAAGQFLDLEGEPNLVEFVQE------KKFGEMSECSAVCGGFLAGADDDEIQSLRRYGRAVGVLYQVVDDIL 842 Y+ ++ ++ ++ I+ P+ +YE+ Y + G KR P++ + +LFG R A+ A+E++H +L+HDD+ MD D RRG P+ H YG+ +AILAGD L FQ + +P +++ R++ ++ GQ +D+E E + QE +K + S+ G +AGA+D++++ + +G +G+ +Q+VDDIL Sbjct: 7 YFNEIVNSVNDIIKSYISGDVPK-LYEAS-YHLFTSGGKRLRPLILTISSDLFGGQRERAYYAGAAIEVLHTFTLVHDDI--MDQDNIRRGLPTVHVKYGLPLAILAGDLLHAKAFQLLTQAL--RGLPSETIIKAFDIFTRSI--IIISEGQAVDMEFEDRIDIKEQEYLDMISRKTAALFSASSSIGALIAGANDNDVRLMSDFGTNLGIAFQIVDDIL 219
BLAST of DY263240 vs. ExPASy Swiss-Prot
Match: ISPA_RHISN (Probable geranyltranstransferase OS=Rhizobium sp. (strain NGR234) GN=NGR_a02750 PE=3 SV=1) HSP 1 Score: 104.375 bits (259), Expect = 1.083e-21 Identity = 74/207 (35.75%), Postives = 101/207 (48.79%), Query Frame = 3 Query: 267 QIYESMRYSVLAKGTKRAPPVMCVAACELFGVNRIAAFPTACALEMVHAASLIHDDLPCMDDDPSRRGQPSNHTVYGVDIAILAGDALFPLGFQHIVSHTPPHLVPEPRVLRVIAEIARAVGSTGMAAGQFLDLEGEPNLVEF-----VQEKKFGEMSECSAVCGGFLAGADDDE----IQSLRRYGRAVGVLYQVVDDILEAKAQT 860 ++ +MRY+ L G KR ++C+AA L A+EM+HA +L+HDDLP MDDD RRG P+ H +G AIL GDAL F + S P + ++ E+A+AV + G A GQ +DL VE + K G + S G A A+D +L Y G+ QVVDDIL+A A T Sbjct: 61 ELMAAMRYATL-HGGKRTRALLCLAAGALADTPAHILDDVGAAIEMMHACTLVHDDLPAMDDDVLRRGLPTVHVKFGEATAILVGDALQAHAFLTLASLD----APGDNRIALVRELAQAVSAEGAAGGQAMDLSLVGKHVELDRIVAMHRMKCGALVRASVRMGALCAIAEDAADATLYCALDHYSACFGLALQVVDDILDATADT 262
BLAST of DY263240 vs. ExPASy Swiss-Prot
Match: IDSA_METTH (Bifunctional short chain isoprenyl diphosphate synthase OS=Methanobacterium thermoautotrophicum GN=idsA PE=3 SV=1) HSP 1 Score: 102.064 bits (253), Expect = 5.375e-21 Identity = 66/213 (30.99%), Postives = 108/213 (50.70%), Query Frame = 3 Query: 225 DQNLEKAITVKYPEQIYESMRYSVLAKGTKRAPPVMCVAACELFGVNRIAAFPTACALEMVHAASLIHDDLPCMDDDPSRRGQPSNHTVYGVDIAILAGDALFPLGFQHIVSHTPPHLVPEPRVLRVIAEIARAVGSTGMAAGQFLDLEGEPNLVEFVQE------KKFGEMSECSAVCGGFLAGADDDEIQSLRRYGRAVGVLYQVVDDILE 845 D+ + ++I+ PE + + + + A G K+ P + + + E G + A A A+E++H SLIHDD+ MDDD RRG+P+ H ++G +AILAGD LF F+ ++ + +V E L V+ + + GQ LD+ E L +E KK + + G + G EI +L YGR +G+ +Q+ DD L+ Sbjct: 16 DERIRESISDITPETLLRASEHLITAGG-KKIRPSLALLSSEAVGGDPGDAAGVAAAIELIHTFSLIHDDI--MDDDEIRRGEPAVHVLWGEPMAILAGDVLFSKAFEAVIRNGDSEMVKE--ALAVVVD-----SCVKICEGQALDMGFEERLDVTEEEYMEMIYKKTAALIAAATKAGAIMGGGSPQEIAALEDYGRCIGLAFQIHDDYLD 218
BLAST of DY263240 vs. ExPASy Swiss-Prot
Match: ISPA_BRAJA (Probable geranyltranstransferase OS=Bradyrhizobium japonicum GN=fppS PE=3 SV=1) HSP 1 Score: 101.679 bits (252), Expect = 7.020e-21 Identity = 72/207 (34.78%), Postives = 101/207 (48.79%), Query Frame = 3 Query: 267 QIYESMRYSVLAKGTKRAPPVMCVAACELFGVNRIAAFPTACALEMVHAASLIHDDLPCMDDDPSRRGQPSNHTVYGVDIAILAGDALFPLGFQHIVSHTPPHLVPEPRVLRVIAEIARAVGSTGMAAGQFLDLEGEPNLVEF-----VQEKKFGEMSECS----AVCGGFLAGADDDEIQSLRRYGRAVGVLYQVVDDILEAKAQT 860 ++ +MRY+ L G KR ++C+AA L A+EM+HA +L+HDDLP MDDD RRG P+ H +G AIL GDAL F + S P P + ++ E+A+AV + G A GQ +DL VE + K G + S A+C + A +L Y G+ QV+DDIL+ A T Sbjct: 61 ELMAAMRYATL-HGGKRTRALLCLAAGALADTPAHMLDDVGAAIEMMHACTLVHDDLPAMDDDVLRRGLPTVHVKFGEATAILVGDALQAHAFLTLASLNAPGDSP----IALVRELAQAVSAEGAAGGQAIDLSLVGKHVELDRIVAMHRMKSGALVRASVRMGALCAVGVNAAHAALYCALDHYSACFGLALQVIDDILDVTADT 262
BLAST of DY263240 vs. ExPASy Swiss-Prot
Match: IDSA_METJA (Bifunctional short chain isoprenyl diphosphate synthase OS=Methanocaldococcus jannaschii GN=idsA PE=3 SV=1) HSP 1 Score: 101.679 bits (252), Expect = 7.020e-21 Identity = 68/220 (30.91%), Postives = 119/220 (54.09%), Query Frame = 3 Query: 210 LITEIDQNLEKAITVKYPEQIYESMRYSVLAKGTKRAPPVMCVAACELFGVNRIAAFPTACALEMVHAASLIHDDLPCMDDDPSRRGQPSNHTVYGVDIAILAGDALFPLGFQ---HIVSHTPPHLVPEPRVLRVIAEIARAVGSTGMAAGQFLDLEGE---PNLVEFVQ--EKKFGEMSECSAVCGGFLAGADDDEIQSLRRYGRAVGVLYQVVDDILE 845 ++ +ID+ L+ V +++Y + ++ + A G KR P + V L + P A A+E++H +LIHDD+ MD+D RRG+P+ H VYG +AILAGD L+ F+ I + H VL+++++ V GQ +D+E E P + E++ KK G + E S G +A +++E ++L+ Y + +G+ +Q+ DD+L+ Sbjct: 17 ILQKIDEELKTY--VDKDDKLYNASKHLLFAGG-KRIRPYLTVVTYMLKKDDIEEVLPAAAAVELIHNYTLIHDDI--MDNDDERRGKPTVHVVYGEPMAILAGDLLYAKAFEAVSRIKDNKKAH-----EVLKILSKACVEV-----CEGQAMDMEFENYYPTMEEYLDMIRKKTGALLEASVGIGAVMADCNEEEREALKEYAKRIGLTFQIQDDVLD 221
BLAST of DY263240 vs. ExPASy Swiss-Prot
Match: GGPS_SULSO (Geranylgeranyl pyrophosphate synthetase OS=Sulfolobus solfataricus GN=gds PE=3 SV=2) HSP 1 Score: 97.0561 bits (240), Expect = 1.729e-19 Identity = 64/225 (28.44%), Postives = 117/225 (52.00%), Query Frame = 3 Query: 186 DLKTYWTTLITEIDQNLEKAITVKYPEQIYESMRYSVLAKGTKRAPPVMCVAACELFGVNRIAAFPTACALEMVHAASLIHDDLPCMDDDPSRRGQPSNHTVYGVDIAILAGDALFPLGFQHIVSHTPPHLVPEPRVLRVIAEIARAVGSTGMAAGQFLDLEGEPNL----VEFVQ--EKKFGEMSECSAVCGGFLAGADDDEIQSLRRYGRAVGVLYQVVDDIL 842 DL Y+ ++ ++ ++ + + + E + + G KR P++ V++ +L G +R A+ A A+E++H +L+HDD+ MD+D RRG P+ H +G +AILAGD L F+ + + + + + ++ ++ GQ +D+ E L E++Q + K + CSA GG + A+DD ++ L YG +G+ +Q+VDDIL Sbjct: 5 DLSLYFNEIVNNVNFRIKNFVKSNF--KTLEEASFHLFTAGGKRLRPLVLVSSSDLIGGDRERAYKAAAAVEILHNFTLVHDDI--MDNDGLRRGLPTVHVKWGEPMAILAGDYLHAKAFEAL--NEALKGLDGNTFYKAFSIFITSIEI--ISEGQAMDMSFENRLDVTEEEYIQMIKGKTAMLFSCSAALGGIINKANDDVVKKLTEYGLNLGISFQIVDDIL 221
BLAST of DY263240 vs. ExPASy Swiss-Prot
Match: CRTE_ESCVU (Geranylgeranyl pyrophosphate synthetase OS=Escherichia vulneris GN=crtE PE=3 SV=1) HSP 1 Score: 93.9745 bits (232), Expect = 1.464e-18 Identity = 69/239 (28.87%), Postives = 113/239 (47.28%), Query Frame = 3 Query: 279 SMRYSVLAKGTKRAPPVMCVAACEL-FGVNRIAAFPTACALEMVHAASLIHDDLPCMDDDPSRRGQPSNHTVYGVDIAILAGDALFPLGFQHIVSHTPPHLVPEPRVLRVIAEIARAVGSTGMAAGQFLD-----LEGEPNLVEFVQEKKFGEMSECSAVCGGFLAGADDDEIQSLRRYGRAVGVLYQVVDDILEAKAQTPRDEEKRKRRGRAMWHSTGVEKAMEVAEELRSKAKEELD 977 +MR V+A G + P +M +AA +L + + ACA+E+ H ASL+ DD+PCMD+ RRGQP+ H +G +AILA L F I + +P R + + E++ AVG G+ GQF D L+ P+ + K G + + + ++L + G +Q++DD+ + +T +D K + ST V + A+ R K +E +D Sbjct: 42 AMREGVMAPGKRIRPLLMLLAARDLRYQGSMPTLLDLACAVELTHTASLMLDDMPCMDNAELRRGQPTTHKKFGESVAILASVGLLSKAFGLIAATGD---LPGERRAQAVNELSTAVGVQGLVLGQFRDLNDAALDRTPDAILSTNHLKTGILFSAMLQIVAIASASSPSTRETLHAFALDFGQAFQLLDDLRDDHPETGKDRNKDAGK------STLVNRL--GADAARQKLREHID 269
BLAST of DY263240 vs. ExPASy Swiss-Prot
Match: CRTE_RHOS4 (Geranylgeranyl pyrophosphate synthetase OS=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) GN=crtE PE=3 SV=3) HSP 1 Score: 93.5893 bits (231), Expect = 1.912e-18 Identity = 60/197 (30.46%), Postives = 96/197 (48.73%), Query Frame = 3 Query: 261 PEQIYESMRYSVLAKGTKRAPPVMCVAACELFGVNRIAAFPTACALEMVHAASLIHDDLPCMDDDPSRRGQPSNHTVYGVDIAILAGDALFPLGFQHIVSHTPPHLVPEPRVLRVIAEIARAVG-STGMAAGQFLDLEGEPNLVEFVQEKKFGEMSECSAVCGGFLAGADDDEIQSLRRYGRAVGVLYQVVDDILEA 848 P ++ ++ Y+V G + P ++ A + A ALE++H ASL+HDDLPC DD RRG+P+ H Y +AIL GD+L +GF+ + R L+++ +A G G+ AGQ + E + NL + K G + + G AG + + + L G +G +QV DD+ +A Sbjct: 24 PSKLATALDYAVTPGGARIRPTLLLSVATACGDDRPALSDAAAVALELIHCASLVHDDLPCFDDAEIRRGKPTVHRAYSEPLAILTGDSLIVMGFEVLARAAADQ---PQRALQLVTALAVRTGMPMGICAGQGWESESQINLSAY-HRAKTGALFIAATQMGAIAAGYEAEPWEEL---GARIGEAFQVADDLRDA 213
BLAST of DY263240 vs. ExPASy Swiss-Prot
Match: ISPB_SHIFL (Octaprenyl-diphosphate synthase OS=Shigella flexneri GN=ispB PE=3 SV=1) HSP 1 Score: 92.0485 bits (227), Expect = 5.562e-18 Identity = 59/202 (29.21%), Postives = 102/202 (50.50%), Query Frame = 3 Query: 267 QIYESMRYSVLAKGTKRAPPVMCVAACELFGVNRIAAFPTACALEMVHAASLIHDDLPCMDDDPSRRGQPSNHTVYGVDIAILAGDALFPLGFQHIVSHTPPHLVPEPRVLRVIAEIARAVGSTGMAAGQFLDLEG--EPNLVEF----VQEKKFGEMSECSAVCGGFLAGADDDEIQSLRRYGRAVGVLYQVVDDILEAKA 854 Q+ + Y +++ G KR P++ V A G A A +E +H A+L+HDD+ +D+ RRG+ + + +G ++L GD ++ FQ + S + +VL V++E + A G+ L L +P++ E V K + E +A C G LAG +E + L+ YGR +G +Q++DD+L+ A Sbjct: 30 QLINQLGYYIVSGGGKRIRPMIAVLAARAVGYEGNAHVTIAALIEFIHTATLLHDDV--VDESDMRRGKATANAAFGNAASVLVGDFIYTRAFQMMTS------LGSLKVLEVMSEAVNVI-----AEGEVLQLMNVNDPDITEENYMRVIYSKTARLFEAAAQCSGILAGCTPEEEKGLQDYGRYLGTAFQLIDDLLDYNA 218 The following BLAST results are available for this feature:
BLAST of DY263240 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 38
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Sequences
The
following sequences are available for this feature:
EST sequence >DY263240 ID=DY263240; Name=DY263240; organism=Citrus clementina; type=EST; length=990bpback to top |