DY263240

Overview
NameDY263240
Unique NameDY263240
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length990
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY263240 vs. ExPASy Swiss-Prot
Match: IDSA_METTM (Bifunctional short chain isoprenyl diphosphate synthase OS=Methanobacterium thermoautotrophicum (strain Marburg / DSM 2133) GN=idsA PE=1 SV=3)

HSP 1 Score: 105.531 bits (262), Expect = 4.862e-22
Identity = 66/213 (30.99%), Postives = 110/213 (51.64%), Query Frame = 3
Query:  225 DQNLEKAITVKYPEQIYESMRYSVLAKGTKRAPPVMCVAACELFGVNRIAAFPTACALEMVHAASLIHDDLPCMDDDPSRRGQPSNHTVYGVDIAILAGDALFPLGFQHIVSHTPPHLVPEPRVLRVIAEIARAVGSTGMAAGQFLDLEGEPNLVEFVQE------KKFGEMSECSAVCGGFLAGADDDEIQSLRRYGRAVGVLYQVVDDILE 845
            D+ + + I+   P+ + ++  + + A G K+  P + + +CE  G N   A   A A+E++H  SLIHDD+  MDDD  RRG+PS H ++G  +AILAGD LF   F+ ++ +     V +   L V+ +         +  GQ LD+  E  L     E      KK   +   +   G  + GA + E+++L  YG+ +G+ +Q+ DD L+
Sbjct:   16 DKRIMECISDITPDTLLKASEHLITAGG-KKIRPSLALLSCEAVGGNPEDAAGVAAAIELIHTFSLIHDDI--MDDDEMRRGEPSVHVIWGEPMAILAGDVLFSKAFEAVIRNGDSERVKD--ALAVVVD-----SCVKICEGQALDMGFEERLDVTEDEYMEMIYKKTAALIAAATKAGAIMGGASEREVEALEDYGKFIGLAFQIHDDYLD 218          
BLAST of DY263240 vs. ExPASy Swiss-Prot
Match: GGPS_SULAC (Geranylgeranyl pyrophosphate synthetase OS=Sulfolobus acidocaldarius GN=gds PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 8.293e-22
Identity = 65/221 (29.41%), Postives = 118/221 (53.39%), Query Frame = 3
Query:  198 YWTTLITEIDQNLEKAITVKYPEQIYESMRYSVLAKGTKRAPPVMCVAACELFGVNRIAAFPTACALEMVHAASLIHDDLPCMDDDPSRRGQPSNHTVYGVDIAILAGDALFPLGFQHIVSHTPPHLVPEPRVLRVIAEIARAVGSTGMAAGQFLDLEGEPNLVEFVQE------KKFGEMSECSAVCGGFLAGADDDEIQSLRRYGRAVGVLYQVVDDIL 842
            Y+  ++  ++  ++  I+   P+ +YE+  Y +   G KR  P++   + +LFG  R  A+    A+E++H  +L+HDD+  MD D  RRG P+ H  YG+ +AILAGD L    FQ +        +P   +++      R++    ++ GQ +D+E E  +    QE      +K   +   S+  G  +AGA+D++++ +  +G  +G+ +Q+VDDIL
Sbjct:    7 YFNEIVNSVNDIIKSYISGDVPK-LYEAS-YHLFTSGGKRLRPLILTISSDLFGGQRERAYYAGAAIEVLHTFTLVHDDI--MDQDNIRRGLPTVHVKYGLPLAILAGDLLHAKAFQLLTQAL--RGLPSETIIKAFDIFTRSI--IIISEGQAVDMEFEDRIDIKEQEYLDMISRKTAALFSASSSIGALIAGANDNDVRLMSDFGTNLGIAFQIVDDIL 219          
BLAST of DY263240 vs. ExPASy Swiss-Prot
Match: ISPA_RHISN (Probable geranyltranstransferase OS=Rhizobium sp. (strain NGR234) GN=NGR_a02750 PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 1.083e-21
Identity = 74/207 (35.75%), Postives = 101/207 (48.79%), Query Frame = 3
Query:  267 QIYESMRYSVLAKGTKRAPPVMCVAACELFGVNRIAAFPTACALEMVHAASLIHDDLPCMDDDPSRRGQPSNHTVYGVDIAILAGDALFPLGFQHIVSHTPPHLVPEPRVLRVIAEIARAVGSTGMAAGQFLDLEGEPNLVEF-----VQEKKFGEMSECSAVCGGFLAGADDDE----IQSLRRYGRAVGVLYQVVDDILEAKAQT 860
            ++  +MRY+ L  G KR   ++C+AA  L             A+EM+HA +L+HDDLP MDDD  RRG P+ H  +G   AIL GDAL    F  + S       P    + ++ E+A+AV + G A GQ +DL      VE      +   K G +   S   G   A A+D        +L  Y    G+  QVVDDIL+A A T
Sbjct:   61 ELMAAMRYATL-HGGKRTRALLCLAAGALADTPAHILDDVGAAIEMMHACTLVHDDLPAMDDDVLRRGLPTVHVKFGEATAILVGDALQAHAFLTLASLD----APGDNRIALVRELAQAVSAEGAAGGQAMDLSLVGKHVELDRIVAMHRMKCGALVRASVRMGALCAIAEDAADATLYCALDHYSACFGLALQVVDDILDATADT 262          
BLAST of DY263240 vs. ExPASy Swiss-Prot
Match: IDSA_METTH (Bifunctional short chain isoprenyl diphosphate synthase OS=Methanobacterium thermoautotrophicum GN=idsA PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 5.375e-21
Identity = 66/213 (30.99%), Postives = 108/213 (50.70%), Query Frame = 3
Query:  225 DQNLEKAITVKYPEQIYESMRYSVLAKGTKRAPPVMCVAACELFGVNRIAAFPTACALEMVHAASLIHDDLPCMDDDPSRRGQPSNHTVYGVDIAILAGDALFPLGFQHIVSHTPPHLVPEPRVLRVIAEIARAVGSTGMAAGQFLDLEGEPNLVEFVQE------KKFGEMSECSAVCGGFLAGADDDEIQSLRRYGRAVGVLYQVVDDILE 845
            D+ + ++I+   PE +  +  + + A G K+  P + + + E  G +   A   A A+E++H  SLIHDD+  MDDD  RRG+P+ H ++G  +AILAGD LF   F+ ++ +    +V E   L V+ +         +  GQ LD+  E  L    +E      KK   +   +   G  + G    EI +L  YGR +G+ +Q+ DD L+
Sbjct:   16 DERIRESISDITPETLLRASEHLITAGG-KKIRPSLALLSSEAVGGDPGDAAGVAAAIELIHTFSLIHDDI--MDDDEIRRGEPAVHVLWGEPMAILAGDVLFSKAFEAVIRNGDSEMVKE--ALAVVVD-----SCVKICEGQALDMGFEERLDVTEEEYMEMIYKKTAALIAAATKAGAIMGGGSPQEIAALEDYGRCIGLAFQIHDDYLD 218          
BLAST of DY263240 vs. ExPASy Swiss-Prot
Match: ISPA_BRAJA (Probable geranyltranstransferase OS=Bradyrhizobium japonicum GN=fppS PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 7.020e-21
Identity = 72/207 (34.78%), Postives = 101/207 (48.79%), Query Frame = 3
Query:  267 QIYESMRYSVLAKGTKRAPPVMCVAACELFGVNRIAAFPTACALEMVHAASLIHDDLPCMDDDPSRRGQPSNHTVYGVDIAILAGDALFPLGFQHIVSHTPPHLVPEPRVLRVIAEIARAVGSTGMAAGQFLDLEGEPNLVEF-----VQEKKFGEMSECS----AVCGGFLAGADDDEIQSLRRYGRAVGVLYQVVDDILEAKAQT 860
            ++  +MRY+ L  G KR   ++C+AA  L             A+EM+HA +L+HDDLP MDDD  RRG P+ H  +G   AIL GDAL    F  + S   P   P    + ++ E+A+AV + G A GQ +DL      VE      +   K G +   S    A+C   +  A      +L  Y    G+  QV+DDIL+  A T
Sbjct:   61 ELMAAMRYATL-HGGKRTRALLCLAAGALADTPAHMLDDVGAAIEMMHACTLVHDDLPAMDDDVLRRGLPTVHVKFGEATAILVGDALQAHAFLTLASLNAPGDSP----IALVRELAQAVSAEGAAGGQAIDLSLVGKHVELDRIVAMHRMKSGALVRASVRMGALCAVGVNAAHAALYCALDHYSACFGLALQVIDDILDVTADT 262          
BLAST of DY263240 vs. ExPASy Swiss-Prot
Match: IDSA_METJA (Bifunctional short chain isoprenyl diphosphate synthase OS=Methanocaldococcus jannaschii GN=idsA PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 7.020e-21
Identity = 68/220 (30.91%), Postives = 119/220 (54.09%), Query Frame = 3
Query:  210 LITEIDQNLEKAITVKYPEQIYESMRYSVLAKGTKRAPPVMCVAACELFGVNRIAAFPTACALEMVHAASLIHDDLPCMDDDPSRRGQPSNHTVYGVDIAILAGDALFPLGFQ---HIVSHTPPHLVPEPRVLRVIAEIARAVGSTGMAAGQFLDLEGE---PNLVEFVQ--EKKFGEMSECSAVCGGFLAGADDDEIQSLRRYGRAVGVLYQVVDDILE 845
            ++ +ID+ L+    V   +++Y + ++ + A G KR  P + V    L   +     P A A+E++H  +LIHDD+  MD+D  RRG+P+ H VYG  +AILAGD L+   F+    I  +   H      VL+++++    V       GQ +D+E E   P + E++    KK G + E S   G  +A  +++E ++L+ Y + +G+ +Q+ DD+L+
Sbjct:   17 ILQKIDEELKTY--VDKDDKLYNASKHLLFAGG-KRIRPYLTVVTYMLKKDDIEEVLPAAAAVELIHNYTLIHDDI--MDNDDERRGKPTVHVVYGEPMAILAGDLLYAKAFEAVSRIKDNKKAH-----EVLKILSKACVEV-----CEGQAMDMEFENYYPTMEEYLDMIRKKTGALLEASVGIGAVMADCNEEEREALKEYAKRIGLTFQIQDDVLD 221          
BLAST of DY263240 vs. ExPASy Swiss-Prot
Match: GGPS_SULSO (Geranylgeranyl pyrophosphate synthetase OS=Sulfolobus solfataricus GN=gds PE=3 SV=2)

HSP 1 Score: 97.0561 bits (240), Expect = 1.729e-19
Identity = 64/225 (28.44%), Postives = 117/225 (52.00%), Query Frame = 3
Query:  186 DLKTYWTTLITEIDQNLEKAITVKYPEQIYESMRYSVLAKGTKRAPPVMCVAACELFGVNRIAAFPTACALEMVHAASLIHDDLPCMDDDPSRRGQPSNHTVYGVDIAILAGDALFPLGFQHIVSHTPPHLVPEPRVLRVIAEIARAVGSTGMAAGQFLDLEGEPNL----VEFVQ--EKKFGEMSECSAVCGGFLAGADDDEIQSLRRYGRAVGVLYQVVDDIL 842
            DL  Y+  ++  ++  ++  +   +  +  E   + +   G KR  P++ V++ +L G +R  A+  A A+E++H  +L+HDD+  MD+D  RRG P+ H  +G  +AILAGD L    F+ +  +     +      +  +    ++    ++ GQ +D+  E  L     E++Q  + K   +  CSA  GG +  A+DD ++ L  YG  +G+ +Q+VDDIL
Sbjct:    5 DLSLYFNEIVNNVNFRIKNFVKSNF--KTLEEASFHLFTAGGKRLRPLVLVSSSDLIGGDRERAYKAAAAVEILHNFTLVHDDI--MDNDGLRRGLPTVHVKWGEPMAILAGDYLHAKAFEAL--NEALKGLDGNTFYKAFSIFITSIEI--ISEGQAMDMSFENRLDVTEEEYIQMIKGKTAMLFSCSAALGGIINKANDDVVKKLTEYGLNLGISFQIVDDIL 221          
BLAST of DY263240 vs. ExPASy Swiss-Prot
Match: CRTE_ESCVU (Geranylgeranyl pyrophosphate synthetase OS=Escherichia vulneris GN=crtE PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.464e-18
Identity = 69/239 (28.87%), Postives = 113/239 (47.28%), Query Frame = 3
Query:  279 SMRYSVLAKGTKRAPPVMCVAACEL-FGVNRIAAFPTACALEMVHAASLIHDDLPCMDDDPSRRGQPSNHTVYGVDIAILAGDALFPLGFQHIVSHTPPHLVPEPRVLRVIAEIARAVGSTGMAAGQFLD-----LEGEPNLVEFVQEKKFGEMSECSAVCGGFLAGADDDEIQSLRRYGRAVGVLYQVVDDILEAKAQTPRDEEKRKRRGRAMWHSTGVEKAMEVAEELRSKAKEELD 977
            +MR  V+A G +  P +M +AA +L +  +       ACA+E+ H ASL+ DD+PCMD+   RRGQP+ H  +G  +AILA   L    F  I +      +P  R  + + E++ AVG  G+  GQF D     L+  P+ +      K G +           + +     ++L  +    G  +Q++DD+ +   +T +D  K   +      ST V +    A+  R K +E +D
Sbjct:   42 AMREGVMAPGKRIRPLLMLLAARDLRYQGSMPTLLDLACAVELTHTASLMLDDMPCMDNAELRRGQPTTHKKFGESVAILASVGLLSKAFGLIAATGD---LPGERRAQAVNELSTAVGVQGLVLGQFRDLNDAALDRTPDAILSTNHLKTGILFSAMLQIVAIASASSPSTRETLHAFALDFGQAFQLLDDLRDDHPETGKDRNKDAGK------STLVNRL--GADAARQKLREHID 269          
BLAST of DY263240 vs. ExPASy Swiss-Prot
Match: CRTE_RHOS4 (Geranylgeranyl pyrophosphate synthetase OS=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) GN=crtE PE=3 SV=3)

HSP 1 Score: 93.5893 bits (231), Expect = 1.912e-18
Identity = 60/197 (30.46%), Postives = 96/197 (48.73%), Query Frame = 3
Query:  261 PEQIYESMRYSVLAKGTKRAPPVMCVAACELFGVNRIAAFPTACALEMVHAASLIHDDLPCMDDDPSRRGQPSNHTVYGVDIAILAGDALFPLGFQHIVSHTPPHLVPEPRVLRVIAEIARAVG-STGMAAGQFLDLEGEPNLVEFVQEKKFGEMSECSAVCGGFLAGADDDEIQSLRRYGRAVGVLYQVVDDILEA 848
            P ++  ++ Y+V   G +  P ++   A          +   A ALE++H ASL+HDDLPC DD   RRG+P+ H  Y   +AIL GD+L  +GF+ +            R L+++  +A   G   G+ AGQ  + E + NL  +    K G +   +   G   AG + +  + L   G  +G  +QV DD+ +A
Sbjct:   24 PSKLATALDYAVTPGGARIRPTLLLSVATACGDDRPALSDAAAVALELIHCASLVHDDLPCFDDAEIRRGKPTVHRAYSEPLAILTGDSLIVMGFEVLARAAADQ---PQRALQLVTALAVRTGMPMGICAGQGWESESQINLSAY-HRAKTGALFIAATQMGAIAAGYEAEPWEEL---GARIGEAFQVADDLRDA 213          
BLAST of DY263240 vs. ExPASy Swiss-Prot
Match: ISPB_SHIFL (Octaprenyl-diphosphate synthase OS=Shigella flexneri GN=ispB PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 5.562e-18
Identity = 59/202 (29.21%), Postives = 102/202 (50.50%), Query Frame = 3
Query:  267 QIYESMRYSVLAKGTKRAPPVMCVAACELFGVNRIAAFPTACALEMVHAASLIHDDLPCMDDDPSRRGQPSNHTVYGVDIAILAGDALFPLGFQHIVSHTPPHLVPEPRVLRVIAEIARAVGSTGMAAGQFLDLEG--EPNLVEF----VQEKKFGEMSECSAVCGGFLAGADDDEIQSLRRYGRAVGVLYQVVDDILEAKA 854
            Q+   + Y +++ G KR  P++ V A    G    A    A  +E +H A+L+HDD+  +D+   RRG+ + +  +G   ++L GD ++   FQ + S      +   +VL V++E    +     A G+ L L    +P++ E     V   K   + E +A C G LAG   +E + L+ YGR +G  +Q++DD+L+  A
Sbjct:   30 QLINQLGYYIVSGGGKRIRPMIAVLAARAVGYEGNAHVTIAALIEFIHTATLLHDDV--VDESDMRRGKATANAAFGNAASVLVGDFIYTRAFQMMTS------LGSLKVLEVMSEAVNVI-----AEGEVLQLMNVNDPDITEENYMRVIYSKTARLFEAAAQCSGILAGCTPEEEKGLQDYGRYLGTAFQLIDDLLDYNA 218          
The following BLAST results are available for this feature:
BLAST of DY263240 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 38
Match NameE-valueIdentityDescription
IDSA_METTM4.862e-2230.99Bifunctional short chain isoprenyl diphosphate syn... [more]
GGPS_SULAC8.293e-2229.41Geranylgeranyl pyrophosphate synthetase OS=Sulfolo... [more]
ISPA_RHISN1.083e-2135.75Probable geranyltranstransferase OS=Rhizobium sp. ... [more]
IDSA_METTH5.375e-2130.99Bifunctional short chain isoprenyl diphosphate syn... [more]
ISPA_BRAJA7.020e-2134.78Probable geranyltranstransferase OS=Bradyrhizobium... [more]
IDSA_METJA7.020e-2130.91Bifunctional short chain isoprenyl diphosphate syn... [more]
GGPS_SULSO1.729e-1928.44Geranylgeranyl pyrophosphate synthetase OS=Sulfolo... [more]
CRTE_ESCVU1.464e-1828.87Geranylgeranyl pyrophosphate synthetase OS=Escheri... [more]
CRTE_RHOS41.912e-1830.46Geranylgeranyl pyrophosphate synthetase OS=Rhodoba... [more]
ISPB_SHIFL5.562e-1829.21Octaprenyl-diphosphate synthase OS=Shigella flexne... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA11AG12RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY263240 ID=DY263240; Name=DY263240; organism=Citrus clementina; type=EST; length=990bp
CACAAACGCTTCAATTCAACCTGTACTCCAAAACACCAAAGAAACAATTT
TTTTAAAAAAAAAAAATGATTTTTTCATCAGCATTATTAGCAAACCCGCC
ATGTGTTTGCCTTCCAAGAAAATTCCCCGTTCGTTGTTCGTCTTTACCAG
TCTCTGCTGCAAGCCAGTTGAGATCCACCCAGTTTGATTTGAAGACTTAC
TGGACTACCCTTATTACTGAAATTGATCAGAATTTGGAAAAAGCAATCAC
AGTTAAGTACCCAGAGCAGATCTATGAATCCATGAGATATTCGGTGTTAG
CCAAGGGAACTAAGCGGGCGCCGCCTGTCATGTGTGTGGCAGCTTGCGAG
CTCTTTGGTGTTAATCGGATTGCAGCTTTTCCCACAGCTTGCGCTCTTGA
AATGGTCCATGCTGCTTCATTGATTCATGACGATCTTCCTTGCATGGATG
ATGACCCATCTCGCCGAGGTCAGCCCTCAAACCACACAGTCTATGGTGTT
GACATAGCTATCCTTGCAGGGGATGCACTCTTCCCCCTTGGTTTCCAACA
CATTGTGTCCCACACACCCCCCCATCTCGTGCCTGAGCCCCGTGTCCTTC
GGGTGATTGCTGAGATTGCCCGTGCTGTGGGGTCCACTGGCATGGCTGCC
GGGCAGTTCCTTGATCTTGAGGGTGAACCCAACTTGGTTGAATTTGTCCA
GGAGAAAAAATTCGGTGAAATGAGTGAGTGCTCAGCGGTGTGTGGTGGGT
TCTTGGCTGGTGCAGATGATGATGAGATACAGAGCTTGCGGAGGTATGGA
AGAGCTGTTGGGGTATTATACCAAGTAGTTGATGACATATTGGAAGCAAA
GGCACAGACTCCAAGAGATGAAGAGAAGAGAAAAAGAAGGGGAAGAGCTA
TGTGGCATTCTACGGGGGTTGAGAAGGCTATGGAGGTGGCTGAGGAACTT
AGAAGCAAAGCTAAAGAGGAATTGGATAGGGTCAAGAATT
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