Evaluation of inter-simple sequence repeat analysis for mapping in Citrus and extension of the genetic linkage map

Publication Overview
TitleEvaluation of inter-simple sequence repeat analysis for mapping in Citrus and extension of the genetic linkage map
AuthorsSankar A, Moore G
TypeJournal Article
Journal NameTheoretical and applied genetics
Volume102
Issue2/3
Year2001
Page(s)206-214
CitationSankar A, Moore G. Evaluation of inter-simple sequence repeat analysis for mapping in Citrus and extension of the genetic linkage map. Theoretical and applied genetics. 2001 Feb; 102(2/3):206-214.

Abstract

Inter-simple sequence repeat (ISSR) analysis was evaluated for its usefulness in generating markers to extend the genetic linkage map of Citrus using a back-cross population previously mapped with restriction fragment length polymorphism (RFLP), random amplified polymorphic DNA (RAPD) and isozyme markers. ISSR markers were obtained through the simple technique of PCR followed by analysis on agarose gels, using simple sequence repeat (SSR) primers. Optimization of reaction conditions was achieved for 50% of the SSR primers screened, and the primers amplified reproducible polymorphic bands in the parents and progeny of the back-cross population. Mendelian segregation of the polymorphic bands was demonstrated, with an insignificant number of skewed loci. Most of the SSR primers produced dominant loci; however co-dominance was observed with loci derived from three primers. A new genetic map was produced by combining the segregation data for the ISSR markers and data for the RFLP, RAPD and isozyme markers from the previous map and creating genetic linkages among all the markers using JoinMap 2.0 mapping software. The new map has an improved distribution of markers along the linkage groups with fewer gaps, and marker order showed partial or complete conservation in the linkage groups. The incorporation of ISSR markers into the genetic linkage map demonstrates that ISSR markers are suitable for genetic mapping in Citrus.
Features
This publication contains information about 138 features:
Feature NameUniquenameType
OPQ06OPQ06genetic_marker
OPQ15OPQ15genetic_marker
OPQ17OPQ17genetic_marker
OPQ18OPQ18genetic_marker
OPT01OPT01genetic_marker
OPT05OPT05genetic_marker
OPT06OPT06genetic_marker
OPT07OPT07genetic_marker
OPT08OPT08genetic_marker
OPT12OPT12genetic_marker
pBCARC115pBCARC115genetic_marker
pBChRC115pBChRC115genetic_marker
pcPt001pcPt001genetic_marker
pgCit005pgCit005genetic_marker
pgCit010pgCit010genetic_marker
pgCit011pgCit011genetic_marker
pgCit012pgCit012genetic_marker
pgCIT015pgCIT015genetic_marker
pgCIT019pgCIT019genetic_marker
pgCIT021pgCIT021genetic_marker
pgCIT027pgCIT027genetic_marker
pgCIT030pgCIT030genetic_marker
pgCIT035pgCIT035genetic_marker
pgCit037pgCit037genetic_marker
pgCit039pgCit039genetic_marker

Pages

Featuremaps
This publication contains information about 1 maps:
Map Name
Citrus-Pomeroy/USDA17-40-BC1-1992-1
Stocks
This publication contains information about 4 stocks:
Stock NameUniquenameType
ThongDeeThongDeeaccession
USDA17-40USDA17-40accession
PomeroyPomeroyaccession
Citrus-Pomeroy/USDA17-40-BC1Citrus-Pomeroy/USDA17-40-BC1population
Properties
Additional details for this publication include:
Property NameValue
Journal AbbreviationTheor. appl. genet.
Language Abbreng
Publication Date2001 Feb
Publication TypeJournal Article
URLhttp://link.springer.com/article/10.1007/s001220051637
KeywordsCitrus maxima, Poncirus trifoliata, interspecific hybridization, backcrossing, genetic markers, chromosome mapping, microsatellite repeats, linkage groups, polymerase chain reaction, repetitive sequences, segregation