DY270334

Overview
NameDY270334
Unique NameDY270334
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1106
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY270334_ssr122 microsatellite DY270334_ssr122:122..136. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
[Close]
BLAST of DY270334 vs. ExPASy Swiss-Prot
Match: ARG2_PHAAU (Indole-3-acetic acid-induced protein ARG2 OS=Phaseolus aureus GN=ARG2 PE=2 SV=1)

HSP 1 Score: 58.5362 bits (140), Expect = 2.933e-15
Identity = 29/46 (63.04%), Postives = 32/46 (69.57%), Query Frame = 2 
Query:  296 MLKKPAEEMTGSSEKVSWVPDPVTGVYRPENLANELDGADLRAMFL 433
            M+ K  EE     EKVSWVPDPVTG YRPEN  NE+D AD+RA  L
Sbjct:   49 MVPKSGEEKVRGGEKVSWVPDPVTGYYRPEN-TNEIDVADMRATVL 93

HSP 2 Score: 45.4394 bits (106), Expect = 2.933e-15
Identity = 21/41 (51.22%), Postives = 28/41 (68.29%), Query Frame = 1 
Query:  154 MARSFSNAKLFSALVADGISNAIYKRGYSAASQGAVAGNRG 276
            MARSF+N K+ SALVADG SN   + G++AA+    +  RG
Sbjct:    1 MARSFTNVKVLSALVADGFSNTTTRHGFAAAAAATQSATRG 41
[Close]
BLAST of DY270334 vs. ExPASy Swiss-Prot
Match: LEA5_CITSI (Late embryogenesis abundant protein Lea5 OS=Citrus sinensis GN=LEA5 PE=2 SV=1)

HSP 1 Score: 51.2174 bits (121), Expect = 8.007e-11
Identity = 24/47 (51.06%), Postives = 31/47 (65.96%), Query Frame = 2 
Query:  299 LKKPAEEMTGSSEKVSWVPDPVTGVYRPENLANELDGADLRAMFLKH 439
            L+    E +G+S   +W PDP+TG YRPEN A E+D A+LR M L H
Sbjct:   48 LRPAVREDSGASS--AWAPDPITGYYRPENRAVEIDPAELREMLLNH 92

HSP 2 Score: 37.7354 bits (86), Expect = 8.007e-11
Identity = 20/32 (62.50%), Postives = 24/32 (75.00%), Query Frame = 1 
Query:  154 MARSFSNAKLFSALVADGISNAIYKRGYSAAS 249
            MARS   AKL  A VADGIS +I +RGY+AA+
Sbjct:    1 MARSLFKAKLLLAPVADGISLSISRRGYAAAA 32
The following BLAST results are available for this feature:
BLAST of DY270334 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
ARG2_PHAAU2.933e-1563.04Indole-3-acetic acid-induced protein ARG2 OS=Phase... [more]
LEA5_CITSI8.007e-1151.06Late embryogenesis abundant protein Lea5 OS=Citrus... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAP6YE22FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY270334 ID=DY270334; Name=DY270334; organism=Citrus clementina; type=EST; length=1106bp
CACAAACACTTTGTTGGGATTTTCGCGCTACGAAGAGGGAAGTTTCTTTA
GCTGCTGCTGAAGGCTTTTCGATAGAAAGAAAAGAAGGAAATTGCTTTCT
GCAGCAGCGTTAAGATCTCTTATCATCATCATCATCCCACATAACTAAGA
AAAATGGCTCGCTCTTTCTCAAACGCTAAGCTTTTCTCTGCTCTCGTCGC
TGACGGAATCTCTAACGCCATCTACAAAAGAGGATACTCGGCGGCATCAC
AAGGCGCTGTCGCGGGCAACAGGGGGAGCTAGGAGTGCTGCTGCGATGTT
GAAGAAACCAGCAGAAGAGATGACAGGATCCAGTGAGAAGGTCTCGTGGG
TCCCAGACCCAGTCACTGGTGTCTACAGGCCGGAGAATCTCGCCAACGAG
CTCGATGGGGCCGACCTCAGAGCCATGTTCTTGAAGCACAACAACTGATC
ATCAAAATTAATAAGTATTATTATTAATATATATTAATTCGGACATGGAA
ACTGAGGAAGGACGAAAGAAAAATTAAAAAAAGGTTAAAAAGGGATTTGT
TCTGATGTGGTCAGCCGCATGAGCTCTCGAGGAATTCCGGGAAATTGGCG
TAGCAGCTGCAGCTCCCCTGTTCTCTCTGTTTTGACTTGGGGATCCAAAC
TAGATTTTGTATTGCATGTAACATTCCTGTTTTTTTGTTGCCATTTTTCC
GGAAATAAAAATGATTTTTTAATTTCCAAAAAAAAAAAAAAAAAAAAACC
CACTTTTCCTGGTAAAGGTTGGGCTTATAAAAAAAGCTTTGTTTACAATT
TTTTTGCACCGACCGGGTCCCAATTGGTAAAAAAAAAAACATTATTTGCC
CCCCGGGGGAAAACCCCCAAACGTGAGTCAAACCCCACGCCCCCCAACCT
CTTCTCCGGAACACGTGGACACTTTTCTACTAAATTTTAGAATGGTTATG
TCGCAAAGAAAAATAACTATACCCTATAGTTCAACAAAGTACCTCCCACC
CTCAAACTAAGATCCATATATTTTTTTCATTCTGTTAGATTAAAAAATCC
TCTACGGTCTCCTAAACAAACCTTGCTTCCTGCGAAACTAAAACAGCGAC
AACTCT
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