DY270370

Overview
NameDY270370
Unique NameDY270370
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1207
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig3591 contig Ccv1_Contig3591:1..1207. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY270370 vs. ExPASy Swiss-Prot
Match: GEML5_ARATH (GEM-like protein 5 OS=Arabidopsis thaliana GN=At5g13200 PE=1 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 8.102e-33
Identity = 62/88 (70.45%), Postives = 79/88 (89.77%), Query Frame = 1
Query:   40 GPVAGTLYLSTARVAFFSDRPLCFTAPSGQEAWSYYKVMIPLANISSVNPVTLKENASDKYMKIVTVEGHEFWFMGFVNF*KATNHLL 303
            GPVAGT+YLS ARVAF SDRPL FTAPSGQE+WSYY+V++PLAN+++VNPV +KE   +KY+++ TV+GH+FWFMGFVN+ KAT+HLL
Sbjct:  170 GPVAGTVYLSNARVAFCSDRPLYFTAPSGQESWSYYRVVVPLANVATVNPVVVKETPPEKYIQLTTVDGHDFWFMGFVNYEKATHHLL 257          
BLAST of DY270370 vs. ExPASy Swiss-Prot
Match: GEML1_ARATH (GEM-like protein 1 OS=Arabidopsis thaliana GN=FIP1 PE=1 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 1.136e-18
Identity = 42/87 (48.28%), Postives = 59/87 (67.82%), Query Frame = 1
Query:   40 GPVAGTLYLSTARVAFFSDRPLCFTAPSGQEAWSYYKVMIPLANISSVNPVTLKENASDKYMKIVTVEGHEFWFMGFVNF*KATNHL 300
            GPV G +YLST ++AF SD PL +     Q  WSYYKV++P   + +VNP T + N SDKY+++++++ HEFWFMGFV +  A   L
Sbjct:  165 GPVLGVMYLSTHKLAFSSDNPLSYKEGE-QTLWSYYKVVLPANQLKAVNPSTSRVNTSDKYIQVISIDNHEFWFMGFVTYESAVKSL 250          
BLAST of DY270370 vs. ExPASy Swiss-Prot
Match: GEM_ARATH (GLABRA2 expression modulator OS=Arabidopsis thaliana GN=GEM PE=1 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.256e-17
Identity = 42/91 (46.15%), Postives = 62/91 (68.13%), Query Frame = 1
Query:   40 GPVAGTLYLSTARVAFFSDRPLCFTAPSGQEAWSYYKVMIPLANISSVNPVTLKENASDKYMKIVTVEGHEFWFMGFVNF*KATNHLLNIL 312
            GPV G LY+S+A++A+ SD PL +     Q  WSYYKV+IPL  + +VNP     N ++KY+++++V+ HEFWFMGF+N+  A   L + L
Sbjct:  202 GPVMGVLYISSAKLAYCSDNPLSYKN-GDQTEWSYYKVVIPLHQLKAVNPSASIVNPAEKYIQVISVDNHEFWFMGFLNYDGAVTSLQDSL 291          
BLAST of DY270370 vs. ExPASy Swiss-Prot
Match: GEML8_ARATH (Putative GEM-like protein 8 OS=Arabidopsis thaliana GN=At5g23370 PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 7.619e-15
Identity = 38/87 (43.68%), Postives = 58/87 (66.67%), Query Frame = 1
Query:   40 GPVAGTLYLSTARVAFFSDRPLCFTAPSGQEAWSYYKVMIPLANISSVNPVTLKENASDKYMKIVTVEGHEFWFMGFVNF*KATNHL 300
            GP+AG L++S+ ++AF S+R +   +P G+    +YKV IPL  I+ VN        S KY+++VTV+G +FWFMGF+++ KA N L
Sbjct:  123 GPIAGLLFISSKKIAFCSERSIKVASPQGELNRVHYKVSIPLCKINGVNQSQNTTKPSQKYLEVVTVDGFDFWFMGFLSYQKAFNCL 209          
BLAST of DY270370 vs. ExPASy Swiss-Prot
Match: GEML6_ARATH (GEM-like protein 6 OS=Arabidopsis thaliana GN=At5g23350 PE=2 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 1.300e-14
Identity = 38/87 (43.68%), Postives = 58/87 (66.67%), Query Frame = 1
Query:   40 GPVAGTLYLSTARVAFFSDRPLCFTAPSGQEAWSYYKVMIPLANISSVNPVTLKENASDKYMKIVTVEGHEFWFMGFVNF*KATNHL 300
            GP+AG L++S+ ++AF S+R +   +P G  +  +YKV IPL  I+ VN     +  S KY++IVT++  +FWFMGFV++ KA N L
Sbjct:  123 GPIAGLLFISSKKIAFCSERSIKVASPQGVLSRVHYKVSIPLCKINGVNQSQNTKKPSQKYLEIVTIDNFDFWFMGFVSYQKAFNCL 209          
BLAST of DY270370 vs. ExPASy Swiss-Prot
Match: GEML7_ARATH (GEM-like protein 7 OS=Arabidopsis thaliana GN=At5g23360 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.217e-14
Identity = 37/87 (42.53%), Postives = 58/87 (66.67%), Query Frame = 1
Query:   40 GPVAGTLYLSTARVAFFSDRPLCFTAPSGQEAWSYYKVMIPLANISSVNPVTLKENASDKYMKIVTVEGHEFWFMGFVNF*KATNHL 300
            G +AG L++S+ ++AF S+R +  T+P G     +YKV IPL  I+ VN     +  S +Y+++VTV+ ++FWFMGFV++ KA N L
Sbjct:  115 GSIAGLLFISSKKIAFCSERSIKVTSPQGDLTRVHYKVSIPLCKINGVNQSQNTKKPSQRYLEVVTVDNYDFWFMGFVSYQKAFNCL 201          
BLAST of DY270370 vs. ExPASy Swiss-Prot
Match: GEML4_ARATH (GEM-like protein 4 OS=Arabidopsis thaliana GN=At5g08350 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.217e-14
Identity = 38/87 (43.68%), Postives = 57/87 (65.52%), Query Frame = 1
Query:   40 GPVAGTLYLSTARVAFFSDRPLCFTAPSGQEAWSYYKVMIPLANISSVNPVTLKENASDKYMKIVTVEGHEFWFMGFVNF*KATNHL 300
            GP+AG L++S+ ++AF S+R +   +P G     +YKV IPL  I  VN     +  S KY+++VTV+G +FWFMGF+++ KA N L
Sbjct:  122 GPIAGLLFISSKKMAFCSERSIKVDSPQGDIIRVHYKVSIPLCKIDRVNQSQNTKKPSQKYLEVVTVDGFDFWFMGFLSYQKAFNCL 208          
BLAST of DY270370 vs. ExPASy Swiss-Prot
Match: GEML3_ARATH (Putative GEM-like protein 3 OS=Arabidopsis thaliana GN=At4g40100 PE=3 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 1.030e-11
Identity = 37/91 (40.66%), Postives = 54/91 (59.34%), Query Frame = 1
Query:   40 GPVAGTLYLSTARVAFFSDRPLCFTAPSGQEAWSYYKVMIPLANISSVNPVTLKENASDKYMKIVTVEGHEFWFMGFVNF*KATNHLLNIL 312
            GPV G LY+STA++A+ SD  L               V+IPL  + SVNP     N ++KY+++++V+ HEFWFMGF+N+  A   L + L
Sbjct:  155 GPVMGVLYVSTAKLAYCSDTSL---------------VVIPLHQLKSVNPSISTVNPAEKYIQVISVDDHEFWFMGFLNYEGAVTSLQDTL 230          
BLAST of DY270370 vs. ExPASy Swiss-Prot
Match: GEML2_ARATH (GEM-like protein 2 OS=Arabidopsis thaliana GN=At4g01600 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 8.717e-11
Identity = 36/88 (40.91%), Postives = 54/88 (61.36%), Query Frame = 1
Query:   40 GPVAGTLYLSTARVAFFSDRPLCF-TAPSGQEAWSYYKVMIPLANISSVNPVTLKENASDKYMKIVTVEGHEFWFMGFVNF*KATNHL 300
            GPV G +Y+S  R+AF SD  +   ++  G    +YYKV++    ISS++  T     S++Y+ +VT +G EFWFMGFV++  A N L
Sbjct:  133 GPVTGVIYISNRRIAFCSDYAIRLPSSAGGNGVAAYYKVVMEWEKISSISSSTNVLKPSERYVHMVTRDGFEFWFMGFVSYIDAFNCL 220          
The following BLAST results are available for this feature:
BLAST of DY270370 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
GEML5_ARATH8.102e-3370.45GEM-like protein 5 OS=Arabidopsis thaliana GN=At5g... [more]
GEML1_ARATH1.136e-1848.28GEM-like protein 1 OS=Arabidopsis thaliana GN=FIP1... [more]
GEM_ARATH1.256e-1746.15GLABRA2 expression modulator OS=Arabidopsis thalia... [more]
GEML8_ARATH7.619e-1543.68Putative GEM-like protein 8 OS=Arabidopsis thalian... [more]
GEML6_ARATH1.300e-1443.68GEM-like protein 6 OS=Arabidopsis thaliana GN=At5g... [more]
GEML7_ARATH2.217e-1442.53GEM-like protein 7 OS=Arabidopsis thaliana GN=At5g... [more]
GEML4_ARATH2.217e-1443.68GEM-like protein 4 OS=Arabidopsis thaliana GN=At5g... [more]
GEML3_ARATH1.030e-1140.66Putative GEM-like protein 3 OS=Arabidopsis thalian... [more]
GEML2_ARATH8.717e-1140.91GEM-like protein 2 OS=Arabidopsis thaliana GN=At4g... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAP6YG13FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY270370 ID=DY270370; Name=DY270370; organism=Citrus clementina; type=EST; length=1207bp
CTAAAGAAGACCCTTTAAAGTTATCTTTCTACAACAACTGGTCCTGTTGC
TGGAACACTCTATTTATCAACGGCCCGTGTGGCTTTTTTCAGTGATCGTC
CCTTGTGTTTTACTGCTCCATCTGGGCAGGAAGCTTGGAGCTACTACAAG
GTTATGATACCTTTGGCGAATATAAGCTCAGTCAATCCAGTGACATTAAA
AGAAAATGCATCAGACAAGTACATGAAGATTGTAACTGTGGAGGGACATG
AATTTTGGTTCATGGGCTTTGTCAATTTCTAGAAAGCAACGAACCACTTG
TTGAACATTTTGTTTTTTTTTATATCAACTGGAAGTGCATGTTTAGTTGG
GCGACCATTAACTGTGTAAAATAGGTTGTTGGATAAGATTAGTTAATCGC
AATTCCTTTTACTACGGTTTATGTGTAACTCCTTCATCTATCAACACTAT
ACAAACAACTAAGTACAATAATCAACACCATCCATATACTAGACAAAAAA
TAAAAAATTTAAAATTCACAACTTACTAAATACACATAATCACCACACCC
ATCTCCACAACCATATATACCAAACACAACAACTACGATGAACCTCCATC
ACAAAGTCTTTTTGCCCACCATTAATTAAAAACCGTTCAAAAAAAAAAAA
ACAAACTAATCAATTACACACAATCTTTAAAGATACAAAATAAATAATTC
CAACACCCAAACACTTATTAAATCTATATTAAAAACTACCTACCTTAACA
TAATATACACACATTTAAATAACATTACTACAATCAACAATATCCAACAT
AATTCAGATAAATATCACAATTAATACAAACACAAATCCCATACCATATC
AATTAATTTTATTTCACAATACATACAAAACTACATCAAGATATACAATA
AACCTCAATACACAACTCACACTACTACCCCCCCGCTCATCACATCACTA
CTCCTCAACAACTCTTTATACATCCCAATTTCTTATTCCCACATAATCAT
CAAATAATCTTATAAACCCAATCTCATATAACTTTTACAATAGATTTTAT
AAACTATAAAATATAACATAATATAGAATAACACATACAAGTAATCCTTA
TCTATCTTACTTTAATCTTTTTCCATACTATTTAACTCTCTTTGTACATA
TTTATTATCTCATCAAACTATTATATCATTTCAAGCTTTGTTTCTCACTA
AGTTTAT
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