DY270378

Overview
NameDY270378
Unique NameDY270378
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1053
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY270378 vs. ExPASy Swiss-Prot
Match: RRAA3_ARATH (Regulator of ribonuclease-like protein 3 OS=Arabidopsis thaliana GN=At5g56260 PE=2 SV=1)

HSP 1 Score: 221.476 bits (563), Expect = 6.624e-57
Identity = 105/132 (79.55%), Postives = 117/132 (88.64%), Query Frame = 2
Query:   83 ATAEACDSNAALLASGDLRVLQPVFQIYGQCRSFSGPVVTLKVFEDNVLVRELLETRGEGKVLVIDGGGSMRCALVGGNLGQLAHNNGWSGIVVNGCITDVDDINGCGIGVRALGSHPLKSNKKGHGDKLAP 478
            ATAEACDSNA L+++GDLR L P+F+IYGQ R FSGP+VTLKVFEDNVLVR  LET+GEG VLVIDGGGSMRCALVGGNLGQLA NNGWSGIVVNGC+ DVD+IN C +GVRALGS+PLKS KKGHG+K  P
Sbjct:    5 ATAEACDSNAELISNGDLRALHPIFKIYGQRRCFSGPIVTLKVFEDNVLVRNQLETKGEGGVLVIDGGGSMRCALVGGNLGQLAQNNGWSGIVVNGCVRDVDEINDCDVGVRALGSNPLKSTKKGHGEKNVP 136          
BLAST of DY270378 vs. ExPASy Swiss-Prot
Match: RRAA2_ARATH (Regulator of ribonuclease-like protein 2 OS=Arabidopsis thaliana GN=At5g16450 PE=2 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 2.790e-47
Identity = 87/133 (65.41%), Postives = 108/133 (81.20%), Query Frame = 2
Query:   80 VATAEACDSNAALLASGDLRVLQPVFQIYGQCRSFSGPVVTLKVFEDNVLVRELLETRGEGKVLVIDGGGSMRCALVGGNLGQLAHNNGWSGIVVNGCITDVDDINGCGIGVRALGSHPLKSNKKGHGDKLAP 478
            V TAE CD+N  L+ SG LR LQP+FQIYG+ + FSGPVVT+KVFEDN L+R+ +E +G G+VLV+DGGGS RCA++GGN    A NNGW+GIVVNGCI DVD+INGC IGVRAL SHP+K++KKG G++  P
Sbjct:    4 VTTAEVCDANQELIRSGQLRALQPIFQIYGRRQIFSGPVVTVKVFEDNGLIRQFIEEKGNGRVLVVDGGGSQRCAILGGNPVVQAQNNGWAGIVVNGCIRDVDEINGCDIGVRALASHPIKASKKGLGEQRVP 136          
BLAST of DY270378 vs. ExPASy Swiss-Prot
Match: RRAA1_ARATH (Regulator of ribonuclease-like protein 1 OS=Arabidopsis thaliana GN=At3g02770 PE=2 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 1.060e-46
Identity = 86/130 (66.15%), Postives = 107/130 (82.31%), Query Frame = 2
Query:   80 VATAEACDSNAALLASGDLRVLQPVFQIYGQCRSFSGPVVTLKVFEDNVLVRELLETRGEGKVLVIDGGGSMRCALVGGNLGQLAHNNGWSGIVVNGCITDVDDINGCGIGVRALGSHPLKSNKKGHGDK 469
            V TAE CD+N  ++ SG LR LQPVFQIYG+ + FSGPVVT+KVFEDN L+R  LE +G G+VLV+DGGGS+RCA++GGN    A NNGW+GI+VNGCI DVD+INGC IGVRAL SHP+K++KKG G++
Sbjct:    4 VTTAEVCDANQEMIRSGQLRALQPVFQIYGRRQIFSGPVVTVKVFEDNGLIRHFLEEKGNGRVLVVDGGGSLRCAILGGNPVVQAQNNGWAGIIVNGCIRDVDEINGCDIGVRALASHPIKASKKGLGEQ 133          
BLAST of DY270378 vs. ExPASy Swiss-Prot
Match: RRAA_RALEJ (Regulator of ribonuclease activity A OS=Ralstonia eutropha (strain JMP134) GN=rraA PE=3 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 3.902e-41
Identity = 75/128 (58.59%), Postives = 100/128 (78.12%), Query Frame = 2
Query:   86 TAEACDSNAALLASGDLRVLQPVFQIYGQCRSFSGPVVTLKVFEDNVLVRELLETRGEGKVLVIDGGGSMRCALVGGNLGQLAHNNGWSGIVVNGCITDVDDINGCGIGVRALGSHPLKSNKKGHGDK 469
            T + CD+N   LA G LRV+ PVF+ +G+ ++F+GP  TLK+FEDN LVRE LE+ G+G+VLV+DGGGS+RCALVGGNLG LA  NGW GI+VNGC+ D  +++ C IG+RAL +HP KS K+G G++
Sbjct:    5 TTDLCDANEPRLADGTLRVMAPVFRAFGKQQAFAGPAATLKIFEDNSLVREALESPGQGRVLVVDGGGSLRCALVGGNLGLLAEKNGWVGIIVNGCVRDTGELDVCDIGIRALAAHPQKSQKRGAGER 132          
BLAST of DY270378 vs. ExPASy Swiss-Prot
Match: RRAA_BURPS (Regulator of ribonuclease activity A OS=Burkholderia pseudomallei GN=rraA PE=3 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 2.529e-40
Identity = 79/132 (59.85%), Postives = 100/132 (75.76%), Query Frame = 2
Query:   83 ATAEACDSNAALLASGDLRVLQPVFQIYGQCRSFSGPVVTLKVFEDNVLVRELLETRGEGKVLVIDGGGSMRCALVGGNLGQLAHNNGWSGIVVNGCITDVDDINGCGIGVRALGSHPLKSNKKGHGDKLAP 478
            AT + CD++   LA+G LRVL+PVF+ +G  R F+GP  TLK+FEDN LVR  LE  G G+VLV+DGGGS+RCALVGGNLG+LA  NGW+GIVVNGC+ D D++  C +GV AL +HP KS+K+G G   AP
Sbjct:    4 ATTDLCDAHEDRLAAGTLRVLEPVFRPFGGVRRFAGPAATLKLFEDNSLVRTALEQDGAGRVLVVDGGGSLRCALVGGNLGKLAEKNGWAGIVVNGCVRDSDELAECRVGVLALAAHPRKSDKRGAGVSDAP 135          
BLAST of DY270378 vs. ExPASy Swiss-Prot
Match: RRAA_BURP6 (Regulator of ribonuclease activity A OS=Burkholderia pseudomallei (strain 668) GN=rraA PE=3 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 2.529e-40
Identity = 79/132 (59.85%), Postives = 100/132 (75.76%), Query Frame = 2
Query:   83 ATAEACDSNAALLASGDLRVLQPVFQIYGQCRSFSGPVVTLKVFEDNVLVRELLETRGEGKVLVIDGGGSMRCALVGGNLGQLAHNNGWSGIVVNGCITDVDDINGCGIGVRALGSHPLKSNKKGHGDKLAP 478
            AT + CD++   LA+G LRVL+PVF+ +G  R F+GP  TLK+FEDN LVR  LE  G G+VLV+DGGGS+RCALVGGNLG+LA  NGW+GIVVNGC+ D D++  C +GV AL +HP KS+K+G G   AP
Sbjct:    4 ATTDLCDAHEDRLAAGTLRVLEPVFRPFGGVRRFAGPAATLKLFEDNSLVRTALEQDGAGRVLVVDGGGSLRCALVGGNLGKLAEKNGWAGIVVNGCVRDSDELAECRVGVLALAAHPRKSDKRGAGVSDAP 135          
BLAST of DY270378 vs. ExPASy Swiss-Prot
Match: RRAA_BURP1 (Regulator of ribonuclease activity A OS=Burkholderia pseudomallei (strain 1710b) GN=rraA PE=3 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 2.529e-40
Identity = 79/132 (59.85%), Postives = 100/132 (75.76%), Query Frame = 2
Query:   83 ATAEACDSNAALLASGDLRVLQPVFQIYGQCRSFSGPVVTLKVFEDNVLVRELLETRGEGKVLVIDGGGSMRCALVGGNLGQLAHNNGWSGIVVNGCITDVDDINGCGIGVRALGSHPLKSNKKGHGDKLAP 478
            AT + CD++   LA+G LRVL+PVF+ +G  R F+GP  TLK+FEDN LVR  LE  G G+VLV+DGGGS+RCALVGGNLG+LA  NGW+GIVVNGC+ D D++  C +GV AL +HP KS+K+G G   AP
Sbjct:    4 ATTDLCDAHEDRLAAGTLRVLEPVFRPFGGVRRFAGPAATLKLFEDNSLVRTALEQDGAGRVLVVDGGGSLRCALVGGNLGKLAEKNGWAGIVVNGCVRDSDELAECRVGVLALAAHPRKSDKRGAGVSDAP 135          
BLAST of DY270378 vs. ExPASy Swiss-Prot
Match: RRAA_BURP0 (Regulator of ribonuclease activity A OS=Burkholderia pseudomallei (strain 1106a) GN=rraA PE=3 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 2.529e-40
Identity = 79/132 (59.85%), Postives = 100/132 (75.76%), Query Frame = 2
Query:   83 ATAEACDSNAALLASGDLRVLQPVFQIYGQCRSFSGPVVTLKVFEDNVLVRELLETRGEGKVLVIDGGGSMRCALVGGNLGQLAHNNGWSGIVVNGCITDVDDINGCGIGVRALGSHPLKSNKKGHGDKLAP 478
            AT + CD++   LA+G LRVL+PVF+ +G  R F+GP  TLK+FEDN LVR  LE  G G+VLV+DGGGS+RCALVGGNLG+LA  NGW+GIVVNGC+ D D++  C +GV AL +HP KS+K+G G   AP
Sbjct:    4 ATTDLCDAHEDRLAAGTLRVLEPVFRPFGGVRRFAGPAATLKLFEDNSLVRTALEQDGAGRVLVVDGGGSLRCALVGGNLGKLAEKNGWAGIVVNGCVRDSDELAECRVGVLALAAHPRKSDKRGAGVSDAP 135          
BLAST of DY270378 vs. ExPASy Swiss-Prot
Match: RRAA_BURMS (Regulator of ribonuclease activity A OS=Burkholderia mallei (strain SAVP1) GN=rraA PE=3 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 2.529e-40
Identity = 79/132 (59.85%), Postives = 100/132 (75.76%), Query Frame = 2
Query:   83 ATAEACDSNAALLASGDLRVLQPVFQIYGQCRSFSGPVVTLKVFEDNVLVRELLETRGEGKVLVIDGGGSMRCALVGGNLGQLAHNNGWSGIVVNGCITDVDDINGCGIGVRALGSHPLKSNKKGHGDKLAP 478
            AT + CD++   LA+G LRVL+PVF+ +G  R F+GP  TLK+FEDN LVR  LE  G G+VLV+DGGGS+RCALVGGNLG+LA  NGW+GIVVNGC+ D D++  C +GV AL +HP KS+K+G G   AP
Sbjct:    4 ATTDLCDAHEDRLAAGTLRVLEPVFRPFGGVRRFAGPAATLKLFEDNSLVRTALEQDGAGRVLVVDGGGSLRCALVGGNLGKLAEKNGWAGIVVNGCVRDSDELAECRVGVLALAAHPRKSDKRGAGVSDAP 135          
BLAST of DY270378 vs. ExPASy Swiss-Prot
Match: RRAA_BURMA (Regulator of ribonuclease activity A OS=Burkholderia mallei GN=rraA PE=3 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 2.529e-40
Identity = 79/132 (59.85%), Postives = 100/132 (75.76%), Query Frame = 2
Query:   83 ATAEACDSNAALLASGDLRVLQPVFQIYGQCRSFSGPVVTLKVFEDNVLVRELLETRGEGKVLVIDGGGSMRCALVGGNLGQLAHNNGWSGIVVNGCITDVDDINGCGIGVRALGSHPLKSNKKGHGDKLAP 478
            AT + CD++   LA+G LRVL+PVF+ +G  R F+GP  TLK+FEDN LVR  LE  G G+VLV+DGGGS+RCALVGGNLG+LA  NGW+GIVVNGC+ D D++  C +GV AL +HP KS+K+G G   AP
Sbjct:    4 ATTDLCDAHEDRLAAGTLRVLEPVFRPFGGVRRFAGPAATLKLFEDNSLVRTALEQDGAGRVLVVDGGGSLRCALVGGNLGKLAEKNGWAGIVVNGCVRDSDELAECRVGVLALAAHPRKSDKRGAGVSDAP 135          
The following BLAST results are available for this feature:
BLAST of DY270378 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 185
Match NameE-valueIdentityDescription
RRAA3_ARATH6.624e-5779.55Regulator of ribonuclease-like protein 3 OS=Arabid... [more]
RRAA2_ARATH2.790e-4765.41Regulator of ribonuclease-like protein 2 OS=Arabid... [more]
RRAA1_ARATH1.060e-4666.15Regulator of ribonuclease-like protein 1 OS=Arabid... [more]
RRAA_RALEJ3.902e-4158.59Regulator of ribonuclease activity A OS=Ralstonia ... [more]
RRAA_BURPS2.529e-4059.85Regulator of ribonuclease activity A OS=Burkholder... [more]
RRAA_BURP62.529e-4059.85Regulator of ribonuclease activity A OS=Burkholder... [more]
RRAA_BURP12.529e-4059.85Regulator of ribonuclease activity A OS=Burkholder... [more]
RRAA_BURP02.529e-4059.85Regulator of ribonuclease activity A OS=Burkholder... [more]
RRAA_BURMS2.529e-4059.85Regulator of ribonuclease activity A OS=Burkholder... [more]
RRAA_BURMA2.529e-4059.85Regulator of ribonuclease activity A OS=Burkholder... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAP6YG23FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY270378 ID=DY270378; Name=DY270378; organism=Citrus clementina; type=EST; length=1053bp
TATAGTTTCACTCTTTCATTTTTCCATAATCTGGGAATTCTCTCTAAAGC
TTGCTCAAGGACGCCATATGGCTGGGGTGGTAGCAACTGCTGAAGCTTGT
GACTCAAATGCAGCTCTTCTGGCAAGTGGTGACTTGCGCGTTCTGCAACC
GGTCTTCCAGATCTATGGCCAATGTCGGTCATTCTCTGGTCCAGTTGTCA
CCCTGAAGGTGTTTGAGGACAATGTTTTGGTTAGAGAGCTGCTTGAAACC
AGAGGTGAAGGGAAAGTCCTAGTTATAGACGGTGGGGGAAGCATGAGGTG
TGCTCTGGTAGGCGGCAATTTGGGACAATTGGCGCATAATAATGGATGGT
CGGGCATTGTGGTGAATGGATGCATTACAGATGTAGATGACATCAATGGA
TGTGGTATTGGCGTGAGAGCCCTGGGATCCCATCCTTTGAAATCGAACAA
GAAGGGCCATGGTGACAAGCTAGCTCCCTGTGTACATTGCCAGCATATTC
ATTGTCAGATCATTTAATCATAAATAGCGAAAACCATTTTCACAAGCAAA
CTTTCAACTTATCTGTACTCACAACAACAACAACAAACACACCAAAGAAA
CAACACAACCACCCACTATTCCTCCCTTCATAATGACAACCCAAACCCAC
ATGGGAACCCGAATAAATAACCGCACTCCCCCACAACCCCCCCAACATAA
CAACACCTTTTCACAACTTACATACTATCGACATTCGAAATTCACTCTCA
CACCCCACATCCAACCCTAAAAACAACCCCAATAGCAAATACCCCCAAAA
TTAAACATATAACAACAAACATACATCCCAGCTATACCCCAAGTTTCTAT
AAACAACAAGTGCTTTTACCTCTTTCTTACAATATAAAAAAATAATTACA
ATATCTTATAAAGAAATTATTAACTACACTCAAAACAAAACTAAACCATA
AATAATCAAAAACAACCATTCAAAAACCCCAAACCTCATCACAACACCCA
AGCTACACTAAACCAAACCTACCGGAAATAACCCTCCCGACTAGACTAAA
TCC
back to top