DY270403

Overview
NameDY270403
Unique NameDY270403
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1242
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY270403 vs. ExPASy Swiss-Prot
Match: GRS17_ARATH (Monothiol glutaredoxin-S17 OS=Arabidopsis thaliana GN=GRXS17 PE=2 SV=1)

HSP 1 Score: 286.189 bits (731), Expect = 2.742e-76
Identity = 141/204 (69.12%), Postives = 167/204 (81.86%), Query Frame = 3
Query:   69 VGGSVKELKTKEELDHVRQSGAPVILHFWASWCEASKHMDQVFSHLSTDFPHAHFFRVEAEEHPEISEAYSVSAVPFFVFFKDGKAIDSLEGADPSSLANKVAKVAGSVNSGEPAAPASLGMAAGPAILEAVKELAKQNGSSQVNKEVEPGLSDALKKRLQQLLDSPPVLLFMKGTPEEPKCGFHRQVVDFLKNEKVDVWKFQL 680
            + G+VK++ +K ELD++RQSGAPV+LHFWASWC+ASK MDQVFSHL+TDFP AHFFRVEAEEHPEISEAYSV+AVP+FVFFKDGK +D+LEGADPSSLANKV KVAGS  S EPAAPASLG+AAGP ILE VKE AK   +S  ++      +DALK RL++L +S PV+LFMKG PEEP+CGF R+VVD LK   VD   F +
Sbjct:    1 MSGTVKDIVSKAELDNLRQSGAPVVLHFWASWCDASKQMDQVFSHLATDFPRAHFFRVEAEEHPEISEAYSVAAVPYFVFFKDGKTVDTLEGADPSSLANKVGKVAGSSTSAEPAAPASLGLAAGPTILETVKENAK---ASLQDRAQPVSTADALKSRLEKLTNSHPVMLFMKGIPEEPRCGFSRKVVDILKEVNVDFGSFDI 201          
BLAST of DY270403 vs. ExPASy Swiss-Prot
Match: GRS11_ORYSJ (Monothiol glutaredoxin-S11 OS=Oryza sativa subsp. japonica GN=GRXS11 PE=2 SV=2)

HSP 1 Score: 242.276 bits (617), Expect = 4.541e-63
Identity = 118/201 (58.71%), Postives = 152/201 (75.62%), Query Frame = 3
Query:   78 SVKELKTKEELDHVRQSGAPVILHFWASWCEASKHMDQVFSHLSTDFPHAHFFRVEAEEHPEISEAYSVSAVPFFVFFKDGKAIDSLEGADPSSLANKVAKVAGSVNSGEPAAPASLGMAAGPAILEAVKELAKQNGSSQVNKEVEPGLSDALKKRLQQLLDSPPVLLFMKGTPEEPKCGFHRQVVDFLKNEKVDVWKFQL 680
            +V+E+ +K EL+          +HFWA+WCEASK MD+VF+HL+ DF HA F RVEAEE PEISEAY V+AVP+FVF K+GK +D+LEGA+P+SLANKVAK+AG  +  E A PASLG+AAGPA+LE V+E+A+QNG+S  +        DAL KRL+QL++S PV LFMKGTPE+P+CGF R+VVD LK E V+   F +
Sbjct:    3 AVREVGSKAELEAAAGGARAAAVHFWAAWCEASKQMDEVFAHLAVDFSHAVFLRVEAEEQPEISEAYGVTAVPYFVFLKEGKTVDTLEGANPASLANKVAKLAGPASVAESAVPASLGVAAGPAVLEKVQEMAQQNGASATS-----SAEDALNKRLEQLVNSHPVFLFMKGTPEQPRCGFSRKVVDVLKQEGVEFGSFDI 198          
BLAST of DY270403 vs. ExPASy Swiss-Prot
Match: GLRX3_DANRE (Glutaredoxin 3 OS=Danio rerio GN=glrx3 PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 8.372e-25
Identity = 63/180 (35.00%), Postives = 95/180 (52.78%), Query Frame = 3
Query:  141 ILHFWASWCEASKHMDQVFSHLSTDFPHAHFFRVEAEEHPEISEAYSVSAVPFFVFFKDGKAIDSLEGADPSSLANKVAKVAGSVNSGEPAAPASLGMAAGPAILEAVKELAKQNGSSQVNKEVEPGLSDALKKRLQQLLDSPPVLLFMKGTPEEPKCGFHRQVVDFLKNEKVDVWKFQL 680
            ++HF A W      M+ V + L+ +  H  F ++EAE  PE+SE Y +++VP F+FFK G+ ID L+GA    L NKV +               LG   G A+           G+  V KE        L +RL++L+++ P +LFMKG+P+EP+CGF RQ++  LK+  V    F +
Sbjct:   26 VVHFHAPWAPQCSQMNDVMAELAKEHKHTMFVKLEAEAVPEVSEKYEITSVPTFLFFKGGEKIDRLDGAHAPELTNKVQR---------------LGSGGGGAV-----------GAGDVPKE-------DLNQRLKRLINAAPCMLFMKGSPQEPRCGFSRQIIQILKDHNVQYSSFDI 172          
BLAST of DY270403 vs. ExPASy Swiss-Prot
Match: GLRX3_XENTR (Glutaredoxin-3 OS=Xenopus tropicalis GN=glrx3 PE=2 SV=2)

HSP 1 Score: 113.62 bits (283), Expect = 2.436e-24
Identity = 68/203 (33.50%), Postives = 106/203 (52.22%), Query Frame = 3
Query:   78 SVKELKTKEELDHVRQSGAP--VILHFWASWCEASKHMDQVFSHLSTDFPHAHFFRVEAEEHPEISEAYSVSAVPFFVFFKDGKAIDSLEGADPSSLANKVAKVAGSVNSGEPAAPASLGMAAGPAILEAVKELAKQNGSSQVNKEVEPGLSDALKKRLQQLLDSPPVLLFMKGTPEEPKCGFHRQVVDFLKNEKVDVWKFQL 680
            +V E  +  + + + Q+ A    ++HFWA W      M++V + L+ + P   F ++EAE  PE+SE Y V++VP F+FFK+ + ID L+GA    L  +V + A S +   PA P S           A KE                     L  RL++L+++ P +LFMKG+P+EP+CGF RQ+V  L ++KV    F +
Sbjct:    3 AVLEAGSAGQFEQLIQNSAKSLTVVHFWAPWAPQCTQMNEVMAELAKEQPQVMFVKLEAEAVPEVSEKYEVTSVPTFLFFKNSQKIDRLDGAHAPELTKRVQRHASSTSF--PATPNS-----------APKE--------------------DLNGRLKKLINAAPCMLFMKGSPQEPRCGFSRQIVALLNDQKVQFSSFDI 172          
BLAST of DY270403 vs. ExPASy Swiss-Prot
Match: GLRX3_RAT (Glutaredoxin-3 OS=Rattus norvegicus GN=Glrx3 PE=1 SV=2)

HSP 1 Score: 112.079 bits (279), Expect = 7.087e-24
Identity = 62/181 (34.25%), Postives = 94/181 (51.93%), Query Frame = 3
Query:  138 VILHFWASWCEASKHMDQVFSHLSTDFPHAHFFRVEAEEHPEISEAYSVSAVPFFVFFKDGKAIDSLEGADPSSLANKVAKVAGSVNSGEPAAPASLGMAAGPAILEAVKELAKQNGSSQVNKEVEPGLSDALKKRLQQLLDSPPVLLFMKGTPEEPKCGFHRQVVDFLKNEKVDVWKFQL 680
            +++HFWA W      M+ V + L+ + PH  F ++EAE  PE+SE Y +S+VP F+FFK+ + +D L+GA    L  KV +    V+SG          +  P+  E VKE                     L  RL++L  + P +LFMKGTP+EP+CGF +Q+V+ L    +    F +
Sbjct:   36 LVVHFWAPWAPQCVQMNDVMAELAKEHPHVSFVKLEAEAVPEVSEKYEISSVPTFLFFKNSQKVDRLDGAHAPELTKKVQR---HVSSG----------SFPPSTNEHVKE--------------------DLNLRLKKLTHAAPCMLFMKGTPQEPRCGFSKQMVEILHKHNIQFSSFDI 183          
BLAST of DY270403 vs. ExPASy Swiss-Prot
Match: GLRX3_MOUSE (Glutaredoxin-3 OS=Mus musculus GN=Glrx3 PE=1 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 7.087e-24
Identity = 62/181 (34.25%), Postives = 94/181 (51.93%), Query Frame = 3
Query:  138 VILHFWASWCEASKHMDQVFSHLSTDFPHAHFFRVEAEEHPEISEAYSVSAVPFFVFFKDGKAIDSLEGADPSSLANKVAKVAGSVNSGEPAAPASLGMAAGPAILEAVKELAKQNGSSQVNKEVEPGLSDALKKRLQQLLDSPPVLLFMKGTPEEPKCGFHRQVVDFLKNEKVDVWKFQL 680
            +++HFWA W      M+ V + L+ + PH  F ++EAE  PE+SE Y +S+VP F+FFK+ + +D L+GA    L  KV +    V+SG          A  P+  E +KE                     L  RL++L  + P +LFMKGTP+EP+CGF +Q+V+ L    +    F +
Sbjct:   36 LVVHFWAPWAPQCVQMNDVMAELAKEHPHVSFVKLEAEAVPEVSEKYEISSVPTFLFFKNSQKVDRLDGAHAPELTKKVQR---HVSSG----------AFPPSTNEHLKE--------------------DLSLRLKKLTHAAPCMLFMKGTPQEPRCGFSKQMVEILHKHNIQFSSFDI 183          
BLAST of DY270403 vs. ExPASy Swiss-Prot
Match: GLRX3_YEAST (Monothiol glutaredoxin-3 OS=Saccharomyces cerevisiae GN=GRX3 PE=1 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 1.579e-23
Identity = 63/198 (31.82%), Postives = 103/198 (52.02%), Query Frame = 3
Query:   81 VKELKTKEELDHVRQSGAP---VILHFWASWCEASKHMDQVFSHLSTDFPHAH--FFRVEAEEHPEISEAYSVSAVPFFVFFKDGKAIDSLEGADPSSLANKVAKVAGSVNSGEPAAPASLGMAAGPAILEAVKELAKQNGSSQVNKEVEPGLSDALKKRLQQLLDSPPVLLFMKGTPEEPKCGFHRQVVDFLKNEKV 659
            V E+  +E+  ++  + A    ++L+F  SW E  K + QVF  +S +  +++  F  ++A+E+ EISE + +SAVP+F+    G  +  L GADP    + +     SVNSG               +  A       N     ++E E    + +  RL +L+++ PV+LFMKG+P EPKCGF RQ+V  L+  +V
Sbjct:   38 VIEINDQEQFTYLTTTAAGDKLIVLYFHTSWAEPCKALKQVFEAISNEPSNSNVSFLSIDADENSEISELFEISAVPYFIIIHKGTILKELSGADPKEYVSLLEDCKNSVNSGSSQTHT---------MENANVNEGSHNDEDDDDEEEEEETEEQINARLTKLVNAAPVMLFMKGSPSEPKCGFSRQLVGILREHQV 226          
BLAST of DY270403 vs. ExPASy Swiss-Prot
Match: GLRX3_HUMAN (Glutaredoxin-3 OS=Homo sapiens GN=GLRX3 PE=1 SV=2)

HSP 1 Score: 109.768 bits (273), Expect = 3.517e-23
Identity = 59/181 (32.60%), Postives = 92/181 (50.83%), Query Frame = 3
Query:  138 VILHFWASWCEASKHMDQVFSHLSTDFPHAHFFRVEAEEHPEISEAYSVSAVPFFVFFKDGKAIDSLEGADPSSLANKVAKVAGSVNSGEPAAPASLGMAAGPAILEAVKELAKQNGSSQVNKEVEPGLSDALKKRLQQLLDSPPVLLFMKGTPEEPKCGFHRQVVDFLKNEKVDVWKFQL 680
            +++HFWA W      M++V + L+ + P   F ++EAE  PE+SE Y +S+VP F+FFK+ + ID L+GA    L  KV + A S                  + L +  E  K++                L  RL++L  + P +LFMKGTP+EP+CGF +Q+V+ L    +    F +
Sbjct:   34 LVVHFWAPWAPQCAQMNEVMAELAKELPQVSFVKLEAEGVPEVSEKYEISSVPTFLFFKNSQKIDRLDGAHAPELTKKVQRHASS-----------------GSFLPSANEHLKED----------------LNLRLKKLTHAAPCMLFMKGTPQEPRCGFSKQMVEILHKHNIQFSSFDI 181          
BLAST of DY270403 vs. ExPASy Swiss-Prot
Match: GLRX4_YEAST (Monothiol glutaredoxin-4 OS=Saccharomyces cerevisiae GN=GRX4 PE=1 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 3.889e-22
Identity = 63/200 (31.50%), Postives = 105/200 (52.50%), Query Frame = 3
Query:   78 SVKELKTKEELDHVRQSGAP---VILHFWASWCEASKHMDQVFSHLSTDFPH--AHFFRVEAEEHPEISEAYSVSAVPFFVFFKDGKAIDSLEGADPSSLANKVAKVAGSVNSGEPAAPASLGM-AAGPAILEAVKELAKQNGSSQVNKEVEPGLSDALKKRLQQLLDSPPVLLFMKGTPEEPKCGFHRQVVDFLKNEKV 659
            +V E+K++++   +  + A    ++L+F A W +  K M QV   +S         F  ++A+EHPEIS+ + ++AVP+FVF ++G  +  +  ADP      +  ++         A ASL   A GP      K  + +  S   + E E    + +  RL +L+ + PV+LFMKG+P EPKCGF RQ+V  L+  ++
Sbjct:    2 TVVEIKSQDQFTQLTTTNAANKLIVLYFKAQWADPCKTMSQVLEAVSEKVRQEDVRFLSIDADEHPEISDLFEIAAVPYFVFIQNGTIVKEISAADPKEFVKSLEILSN--------ASASLANNAKGP------KSTSDEESSGSSDDE-EDETEEEINARLVKLVQAAPVMLFMKGSPSEPKCGFSRQLVGILREHQI 186          
BLAST of DY270403 vs. ExPASy Swiss-Prot
Match: GLRX3_BOVIN (Glutaredoxin-3 OS=Bos taurus GN=GLRX3 PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 3.889e-22
Identity = 62/193 (32.12%), Postives = 93/193 (48.19%), Query Frame = 3
Query:  102 EELDHVRQSGAPVILHFWASWCEASKHMDQVFSHLSTDFPHAHFFRVEAEEHPEISEAYSVSAVPFFVFFKDGKAIDSLEGADPSSLANKVAKVAGSVNSGEPAAPASLGMAAGPAILEAVKELAKQNGSSQVNKEVEPGLSDALKKRLQQLLDSPPVLLFMKGTPEEPKCGFHRQVVDFLKNEKVDVWKFQL 680
            EEL  +R     +++HFWA W      M+ V + L+ +     F ++EAE  PE+SE Y +S+VP F+FFK+ + ID L+GA    L  KV + A S                               GS   +    P   + L  RL++L  + P +LFMKGTP+EP+CGF +Q+V+ L    +    F +
Sbjct:   22 EELLRLRAKSL-LVVHFWAPWAPQCAQMNDVMAELAKEHQQVSFVKLEAEAVPEVSEKYEISSVPTFLFFKNSQKIDRLDGAHAPELTKKVQRHASS-------------------------------GSFSPSGSEHP--KEDLSLRLKKLTHAAPCMLFMKGTPQEPRCGFSKQMVEILNKHNIQFSSFDI 180          
The following BLAST results are available for this feature:
BLAST of DY270403 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
GRS17_ARATH2.742e-7669.12Monothiol glutaredoxin-S17 OS=Arabidopsis thaliana... [more]
GRS11_ORYSJ4.541e-6358.71Monothiol glutaredoxin-S11 OS=Oryza sativa subsp. ... [more]
GLRX3_DANRE8.372e-2535.00Glutaredoxin 3 OS=Danio rerio GN=glrx3 PE=2 SV=1[more]
GLRX3_XENTR2.436e-2433.50Glutaredoxin-3 OS=Xenopus tropicalis GN=glrx3 PE=2... [more]
GLRX3_RAT7.087e-2434.25Glutaredoxin-3 OS=Rattus norvegicus GN=Glrx3 PE=1 ... [more]
GLRX3_MOUSE7.087e-2434.25Glutaredoxin-3 OS=Mus musculus GN=Glrx3 PE=1 SV=1[more]
GLRX3_YEAST1.579e-2331.82Monothiol glutaredoxin-3 OS=Saccharomyces cerevisi... [more]
GLRX3_HUMAN3.517e-2332.60Glutaredoxin-3 OS=Homo sapiens GN=GLRX3 PE=1 SV=2[more]
GLRX4_YEAST3.889e-2231.50Monothiol glutaredoxin-4 OS=Saccharomyces cerevisi... [more]
GLRX3_BOVIN3.889e-2232.12Glutaredoxin-3 OS=Bos taurus GN=GLRX3 PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionKN0AAP6YI04FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY270403 ID=DY270403; Name=DY270403; organism=Citrus clementina; type=EST; length=1242bp
GTTGAGTCTCTCTTTTTTCTCTCTTCTTGTGTCTGTGAGTGATATTAACG
AATTGGTGAAGAATGAGTGTTGGTGGGTCAGTGAAGGAGTTGAAGACGAA
GGAGGAGCTTGATCACGTGCGCCAGAGTGGCGCACCGGTTATCCTGCACT
TCTGGGCATCATGGTGTGAAGCCTCTAAGCACATGGACCAAGTTTTTTCT
CACCTTTCTACCGATTTTCCACATGCCCATTTCTTCAGGGTTGAAGCTGA
AGAGCACCCCGAAATTTCTGAAGCTTACTCTGTTTCAGCTGTGCCTTTCT
TTGTCTTCTTCAAGGATGGTAAGGCTATTGATTCATTGGAGGGTGCTGAT
CCATCCAGTTTGGCCAACAAGGTTGCTAAGGTTGCTGGATCAGTTAACTC
AGGAGAACCTGCTGCCCCTGCCAGCCTTGGGATGGCTGCTGGACCCGCTA
TACTTGAAGCTGTAAAAGAGTTGGCAAAACAAAATGGCTCTTCCCAAGTG
AACAAGGAAGTGGAGCCTGGTCTCAGTGATGCTCTTAAAAAGCGGCTGCA
GCAGCTGCTTGACTCTCCCCCTGTCCTGCTATTTATGAAGGGAACTCCTG
AAGAACCCAAGTGTGGGTTCCATAGGCAAGTTGTTGACTTTTTGAAAAAT
GAAAAGGTCGACGTTTGGAAGTTTCAACTTTCTTTCCGAACATGAGGTTC
GTGACGAATTAAAGAATTTCTCTTACTCGACTAATTTTTCTCCGTCTCTT
TTGTATATGAAAATCTCCTGGGGGAAGCGACCTCAGACACCCACTGCATA
AACTTGCGCACACTCAATACATTATTCCCCAACTCTCGATTTCGCACTCT
CTTCCCTCAACACACACGCAGCCCCATCTCTCCTACCCCTATCCTTTTTG
TCATACTTTCTCCTTATCTTTAAACCCTCTACAAAAACACCTCCGCTCGC
ACTAACCACGCTTTTCACACTCACTAAATCAACTTTTTTATACGGTCTTA
ATTGACTTTCATCTCCTTCCATCCTATACCTACACATACCCATTCTCTCC
ACCCCTGATCCACCCATATCCTATCCTCCTTCAAGCAATCATATACATCC
AGCCCCTCTCCTACCTCTCAATCCCTTTCTTCTGCCTTTCTCTAACACAC
TACTTCTCCTTCCCCCTATCGCCACCTTACAAGCATTCCCCTTATCCGCA
CCCCTCATCATAGTAGATCTAAATGCCCTTCATTAGCTACAC
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