DY270422

Overview
NameDY270422
Unique NameDY270422
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1178
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY270422 vs. ExPASy Swiss-Prot
Match: SPTC1_MOUSE (Serine palmitoyltransferase 1 OS=Mus musculus GN=Sptlc1 PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 3.291e-23
Identity = 61/140 (43.57%), Postives = 84/140 (60.00%), Query Frame = 3
Query:  507 KSYKPPKRP-LTKKEIDELCDEWVPESLIPPIIEEMQCEPPVLESAAGPHTII-SGKEVVNFASANYLGLKGHEKLPESCTSALKKYGVGSCGPPGFLGTINVHLDCGPEMPKFLGTPEFTPYS*GTFPQFGAIPVFRQK 920
            K+YK  +R  LT KE +EL +EW PE L+PP+ +        + S    H I+ +GKE VNFAS N+LGL  + ++  +  S+LKKYGVG+CGP GF GT +VHLD    + KF+ T E   YS G      AIP + ++
Sbjct:   42 KTYKLQERSDLTAKEKEELIEEWQPEPLVPPVSKNHPALNYNIVSGPPTHNIVVNGKECVNFASFNFLGLLANPRVKAAAFSSLKKYGVGTCGPRGFYGTFDVHLDLEERLAKFMKTEEAIIYSYGFSTVASAIPAYSKR 181          
BLAST of DY270422 vs. ExPASy Swiss-Prot
Match: SPTC1_HUMAN (Serine palmitoyltransferase 1 OS=Homo sapiens GN=SPTLC1 PE=1 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 4.299e-23
Identity = 59/140 (42.14%), Postives = 86/140 (61.43%), Query Frame = 3
Query:  507 KSYKPPKRP-LTKKEIDELCDEWVPESLIPPIIEEMQCEPPVLESAAGPH-TIISGKEVVNFASANYLGLKGHEKLPESCTSALKKYGVGSCGPPGFLGTINVHLDCGPEMPKFLGTPEFTPYS*GTFPQFGAIPVFRQK 920
            K+YK  +R  LT KE +EL +EW PE L+PP+ ++       + S    H T+++GKE +NFAS N+LGL  + ++  +  ++LKKYGVG+CGP GF GT +VHLD    + KF+ T E   YS G      AIP + ++
Sbjct:   42 KTYKLQERSDLTVKEKEELIEEWQPEPLVPPVPKDHPALNYNIVSGPPSHKTVVNGKECINFASFNFLGLLDNPRVKAAALASLKKYGVGTCGPRGFYGTFDVHLDLEDRLAKFMKTEEAIIYSYGFATIASAIPAYSKR 181          
BLAST of DY270422 vs. ExPASy Swiss-Prot
Match: SPTC1_BOVIN (Serine palmitoyltransferase 1 OS=Bos taurus GN=SPTLC1 PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 4.299e-23
Identity = 60/140 (42.86%), Postives = 85/140 (60.71%), Query Frame = 3
Query:  507 KSYKPPKRP-LTKKEIDELCDEWVPESLIPPIIEEMQCEPPVLESAAGPHTII-SGKEVVNFASANYLGLKGHEKLPESCTSALKKYGVGSCGPPGFLGTINVHLDCGPEMPKFLGTPEFTPYS*GTFPQFGAIPVFRQK 920
            K+YK  +R  LT KE +EL +EW PE L+PP+ ++       + S    H I+ +GKE +NFAS N+LGL  + +L  +  ++LKKYGVG+CGP GF GT +VHLD    + KF+ T E   YS G      AIP + ++
Sbjct:   42 KTYKLQERSDLTLKEKEELIEEWQPEPLVPPVSKDHPALNYNIVSGPPSHNIVVNGKECINFASFNFLGLLDNPRLKAAALASLKKYGVGTCGPRGFYGTFDVHLDLEDRLAKFMKTEEAIIYSYGFATIASAIPAYSKR 181          
BLAST of DY270422 vs. ExPASy Swiss-Prot
Match: SPTC1_CRIGR (Serine palmitoyltransferase 1 OS=Cricetulus griseus GN=SPTLC1 PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 7.332e-23
Identity = 60/140 (42.86%), Postives = 84/140 (60.00%), Query Frame = 3
Query:  507 KSYKPPKRP-LTKKEIDELCDEWVPESLIPPIIEEMQCEPPVLESAAGPHTII-SGKEVVNFASANYLGLKGHEKLPESCTSALKKYGVGSCGPPGFLGTINVHLDCGPEMPKFLGTPEFTPYS*GTFPQFGAIPVFRQK 920
            K+YK  +R  LT KE +EL +EW PE L+PP+ +        + S    H I+ +GKE VNFAS N+LGL  + ++  +  ++LKKYGVG+CGP GF GT +VHLD    + KF+ T E   YS G      AIP + ++
Sbjct:   42 KTYKLQERSDLTAKEKEELIEEWQPEPLVPPVSKNHPALNYNIVSGPPTHNIVVNGKECVNFASFNFLGLLANPRVKAAALASLKKYGVGTCGPRGFYGTFDVHLDLEERLAKFMRTEEAIIYSYGFSTIASAIPAYSKR 181          
BLAST of DY270422 vs. ExPASy Swiss-Prot
Match: SPTC1_MACFA (Serine palmitoyltransferase 1 OS=Macaca fascicularis GN=SPTLC1 PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 1.633e-22
Identity = 59/140 (42.14%), Postives = 85/140 (60.71%), Query Frame = 3
Query:  507 KSYKPPKRP-LTKKEIDELCDEWVPESLIPPIIEEMQCEPPVLESAAGPHTII-SGKEVVNFASANYLGLKGHEKLPESCTSALKKYGVGSCGPPGFLGTINVHLDCGPEMPKFLGTPEFTPYS*GTFPQFGAIPVFRQK 920
            K+YK  +R  LT KE +EL +EW PE L+PP+ ++       + S    H I+ +GKE +NFAS N+LGL  + ++  +  ++LKKYGVG+CGP GF GT +VHLD    + KF+ T E   YS G      AIP + ++
Sbjct:   42 KTYKLQERSDLTVKEKEELIEEWQPEPLVPPVPKDHPALNYNIVSGPPSHKIVVNGKECINFASFNFLGLLDNPRVKAAALASLKKYGVGTCGPRGFYGTFDVHLDLEDRLAKFMKTEEAIIYSYGFATIASAIPAYSKR 181          
BLAST of DY270422 vs. ExPASy Swiss-Prot
Match: SPTC1_PONAB (Serine palmitoyltransferase 1 OS=Pongo abelii GN=SPTLC1 PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 2.359e-21
Identity = 58/140 (41.43%), Postives = 84/140 (60.00%), Query Frame = 3
Query:  507 KSYKPPKRP-LTKKEIDELCDEWVPESLIPPIIEEMQCEPPVLESAAGPHTII-SGKEVVNFASANYLGLKGHEKLPESCTSALKKYGVGSCGPPGFLGTINVHLDCGPEMPKFLGTPEFTPYS*GTFPQFGAIPVFRQK 920
            K+YK  +R  LT KE +EL +EW PE L+P + ++       + S    H I+ +GKE +NFAS N+LGL  + ++  +  ++LKKYGVG+CGP GF GT +VHLD    + KF+ T E   YS G      AIP + ++
Sbjct:   42 KTYKLQERSDLTVKEKEELIEEWQPEPLVPLVPKDHPALNYNIVSGPPSHKIVVNGKECINFASFNFLGLLDNPRVKAAALASLKKYGVGTCGPRGFYGTFDVHLDLEDRLAKFMKTEEAIIYSYGFATIASAIPAYSKR 181          
BLAST of DY270422 vs. ExPASy Swiss-Prot
Match: SPTC1_DICDI (Serine palmitoyltransferase 1 OS=Dictyostelium discoideum GN=sptA PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 1.294e-19
Identity = 55/140 (39.29%), Postives = 80/140 (57.14%), Query Frame = 3
Query:  501 SQKSYKPPKRP-LTKKEIDELCDEWVPESLIPPI--IEEMQCEPPVLESAAGPHTIISGKEVVNFASANYLGLKGHEKLPESCTSALKKYGVGSCGPPGFLGTINVHLDCGPEMPKFLGTPEFTPYS*GTFPQFGAIPVF 911
            +++ +KP +   LTK E DEL  EW P  L P    +E +     +++ + G H  I+ K+ +N A +NYLGL  + ++ +   +A++KYGVGSCGP GF GTI+VHLD   +   F+ TPE   YS        AIP F
Sbjct:   41 TKRPFKPRQNDTLTKAEEDELIREWSPIPLTPKSNPLEVLNQTELIIQESEGTHVTINNKKYLNLARSNYLGLINNPEINKISENAIRKYGVGSCGPRGFYGTIDVHLDLEKKTASFMKTPEAVLYSSAYATISSAIPSF 180          
BLAST of DY270422 vs. ExPASy Swiss-Prot
Match: LCB1_SCHPO (Serine palmitoyltransferase 1 OS=Schizosaccharomyces pombe GN=lcb1 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 3.897e-16
Identity = 46/131 (35.11%), Postives = 75/131 (57.25%), Query Frame = 3
Query:  537 TKKEIDELCDEWVPESLIPPI--IEEMQCEP-PVLESAAGPHTIISGKEVVNFASANYLGLKGHEKLPESCTSALKKYGVGSCGPPGFLGTINVHLDCGPEMPKFLGTPEFTPYS*GTFPQFGAIPVFRQK 920
            T+KEI+EL D+W PE L+  +  +E+++ +  PVLES      +I G+ + NFAS N+L L  ++ + E   + L++ G+G+CGPPGF GT + HL    ++  F+G      Y+         IP F ++
Sbjct:   80 TEKEINELVDDWKPEPLVAELTDVEKLELKSIPVLESVHLHTKLIDGRPITNFASFNFLDLAENKHITECAVATLRECGLGACGPPGFYGTQDKHLRLEKDIASFIGVERAIVYAQSFQTISSVIPAFSKR 210          
BLAST of DY270422 vs. ExPASy Swiss-Prot
Match: LCB1_YEAST (Serine palmitoyltransferase 1 OS=Saccharomyces cerevisiae GN=LCB1 PE=1 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 9.933e-12
Identity = 46/151 (30.46%), Postives = 68/151 (45.03%), Query Frame = 3
Query:  504 QKSYKPPKRPLTKKEIDELCDEWVPESLIPPIIEEMQC-----EPPVLESAAGPHTIISGKE-------VVNFASANYLGLKGHEKLPESCTSALKKYGVGSCGPPGFLGTINVHLDCGPEMPKFLGTPEFTPYS*GTFPQFGAIPVFRQK 920
            +KS +  K  L+ +EID L ++W PE L+ P   + Q       P  +E     H  I+          V N AS N+L L   E + E   + +K YGVG+CGP GF G  +VH     ++ +F GT     Y          +P F ++
Sbjct:   78 KKSLQAQKPNLSPQEIDALIEDWEPEPLVDPSATDEQSWRVAKTPVTMEMPIQNHITITRNNLQEKYTNVFNLASNNFLQLSATEPVKEVVKTTIKNYGVGACGPAGFYGNQDVHYTLEYDLAQFFGTQGSVLYGQDFCAAPSVLPAFTKR 228          
The following BLAST results are available for this feature:
BLAST of DY270422 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
SPTC1_MOUSE3.291e-2343.57Serine palmitoyltransferase 1 OS=Mus musculus GN=S... [more]
SPTC1_HUMAN4.299e-2342.14Serine palmitoyltransferase 1 OS=Homo sapiens GN=S... [more]
SPTC1_BOVIN4.299e-2342.86Serine palmitoyltransferase 1 OS=Bos taurus GN=SPT... [more]
SPTC1_CRIGR7.332e-2342.86Serine palmitoyltransferase 1 OS=Cricetulus griseu... [more]
SPTC1_MACFA1.633e-2242.14Serine palmitoyltransferase 1 OS=Macaca fascicular... [more]
SPTC1_PONAB2.359e-2141.43Serine palmitoyltransferase 1 OS=Pongo abelii GN=S... [more]
SPTC1_DICDI1.294e-1939.29Serine palmitoyltransferase 1 OS=Dictyostelium dis... [more]
LCB1_SCHPO3.897e-1635.11Serine palmitoyltransferase 1 OS=Schizosaccharomyc... [more]
LCB1_YEAST9.933e-1230.46Serine palmitoyltransferase 1 OS=Saccharomyces cer... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAP6YJ03FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY270422 ID=DY270422; Name=DY270422; organism=Citrus clementina; type=EST; length=1178bp
AAAATAAAAGGCCTCTGAATCTGTGGGACAGAGAGAGAAGATGCGCGTAT
CGCCCTAGGCGTCATAAGTTAACAGGTAATGTGATATGTCAGTGCCATCG
CCCTTGATTGATCTCTCAAATTTGACAACTCTGTTCAACTAGTCAAAGCA
TTTTACATCTTCTCAATTGAGCTCGAGTTCCAATCTGGTTCCTCTCTCTG
TCATCGTTTAAGCATCTCCGATTTGCAATTCTTATCAAGTGTCTGCGCCG
AATATTGATTGTACATTAGCTGAGGCAGTGTACTGATTTCTTCTTGACTG
ATGGTTGAAGCCTCTCTGCTTGTCAAATTGCGATACTGAGTAGAATGGCA
TCTTTCATTTTGAACTTCGTTAATACTATGCTAAATCGGGTGAAATTGGC
CTTAGATTCTCCTTCTGCCGGAGCGGTTGTTTTTGGAGTGCACATCAGCG
GTCATTTATTCGTGGAAGTTCTTCTTCTGGTGGTCATCCTTTTCCTACTT
TCTCAAAAGAGTTACAAGCCTCCTAAGCGACCGCTGACAAAGAAGGAAAT
AGATGAGCTATGTGATGAGTGGGTTCCAGAATCCCTTATTCCACCGATTA
TAGAAGAGATGCAATGTGAGCCTCCAGTGCTGGAAAGTGCTGCAGGGCCG
CATACAATAATTAGTGGAAAAGAAGTTGTGAATTTTGCTTCAGCAAATTA
TCTTGGATTGAAAGGACATGAAAAATTACCTGAGTCATGTACCTCTGCAT
TGAAAAAATATGGTGTCGGCTCCTGTGGACCTCCTGGCTTTCTAGGAACA
ATAAATGTTCACCTTGATTGTGGGCCAGAAATGCCAAAGTTCCTTGGAAC
CCCCGAATTCACCCCCTATTCTTAAGGGACTTTCCCCCAGTTCGGGGCCA
TTCCCGTTTTCCGCCAAAAAGAAACCCCCAATGGGGCCCGAGGGGGAGGC
CTTTGGGGAATCTCACAGGGCCCTTTTCTCCCCTAAAAGATCGTTCTTCC
CTTCCAAACCATGCAACGGGTTCTCTTACCAAATTCTTTGAAGAAGCGCC
TCCTCCGTATCTAAAGCCGGGTAAACACACCCCCACCCTTCACACCGGAT
GGCGGCCCTGTGTTCAATAGCTCGGCCCAACACCCCCCCGGCCTCGTAGA
TAATAACTACTCTCATTGCCGAGGCAAA
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