DY270439

Overview
NameDY270439
Unique NameDY270439
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1072
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY270439_ssr766 microsatellite DY270439_ssr766:766..777. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig3621 contig Ccv1_Contig3621:1..1072. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY270439 vs. ExPASy Swiss-Prot
Match: CAP10_ARATH (Putative clathrin assembly protein At5g35200 OS=Arabidopsis thaliana GN=At5g35200 PE=1 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 4.454e-32
Identity = 64/74 (86.49%), Postives = 66/74 (89.19%), Query Frame = 1
Query:    1 VIHRVLREVDPTFHEEVINYGRSRSHMLNMAHFKDDSSPNAWDYSAWVRSYALFLEERLECFRVLKYDIETDRP 222
            VIHR LREVD TFHEEVINY RSRSHMLNM+HFKDDS PNAW YSAWVR YALFLEERLECFRVLKYD+E D P
Sbjct:   98 VIHRALREVDQTFHEEVINYSRSRSHMLNMSHFKDDSGPNAWAYSAWVRFYALFLEERLECFRVLKYDVEVDPP 171          
BLAST of DY270439 vs. ExPASy Swiss-Prot
Match: CAP7_ARATH (Putative clathrin assembly protein At5g57200 OS=Arabidopsis thaliana GN=At5g57200 PE=2 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 7.615e-24
Identity = 52/73 (71.23%), Postives = 62/73 (84.93%), Query Frame = 1
Query:    1 VIHRVLREVDPTFHEEVINYGRSRSHMLNMAHFKDDSSPNAWDYSAWVRSYALFLEERLECFRVLKYDIETDR 219
            VIHR LRE DPTF EE++NY   R H+L +++FKDD+SP AWD SAWVR+YALFLEERLEC+RVLKYDIE +R
Sbjct:   94 VIHRTLREGDPTFREELLNYSHRR-HILRISNFKDDTSPLAWDCSAWVRTYALFLEERLECYRVLKYDIEAER 165          
BLAST of DY270439 vs. ExPASy Swiss-Prot
Match: CAP6_ARATH (Putative clathrin assembly protein At4g25940 OS=Arabidopsis thaliana GN=At4g25940 PE=2 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 7.615e-24
Identity = 51/73 (69.86%), Postives = 62/73 (84.93%), Query Frame = 1
Query:    1 VIHRVLREVDPTFHEEVINYGRSRSHMLNMAHFKDDSSPNAWDYSAWVRSYALFLEERLECFRVLKYDIETDR 219
            VIHR LRE DPTF EE++NY   R H+L +++FKDD+SP AWD SAW+R+YALFLEERLEC+RVLKYDIE +R
Sbjct:   94 VIHRTLREGDPTFREELLNYSH-RGHILRISNFKDDTSPLAWDCSAWIRTYALFLEERLECYRVLKYDIEAER 165          
BLAST of DY270439 vs. ExPASy Swiss-Prot
Match: CAP8_ARATH (Putative clathrin assembly protein At2g01600 OS=Arabidopsis thaliana GN=At2g01600 PE=2 SV=2)

HSP 1 Score: 108.997 bits (271), Expect = 4.936e-23
Identity = 51/73 (69.86%), Postives = 62/73 (84.93%), Query Frame = 1
Query:    1 VIHRVLREVDPTFHEEVINYGRSRSHMLNMAHFKDDSSPNAWDYSAWVRSYALFLEERLECFRVLKYDIETDR 219
            VIHR+LRE DPTF EE++N+ + R  +L +++FKDDSSP AWD SAWVR+YALFLEERLECFRVLKYD E +R
Sbjct:   94 VIHRLLREGDPTFREELLNFSQ-RGRILQLSNFKDDSSPIAWDCSAWVRTYALFLEERLECFRVLKYDTEAER 165          
BLAST of DY270439 vs. ExPASy Swiss-Prot
Match: CAP9_ARATH (Putative clathrin assembly protein At1g14910 OS=Arabidopsis thaliana GN=At1g14910 PE=2 SV=2)

HSP 1 Score: 105.916 bits (263), Expect = 4.179e-22
Identity = 48/73 (65.75%), Postives = 62/73 (84.93%), Query Frame = 1
Query:    1 VIHRVLREVDPTFHEEVINYGRSRSHMLNMAHFKDDSSPNAWDYSAWVRSYALFLEERLECFRVLKYDIETDR 219
            VIHR+LR+ DPTF EE++N+ + +  ++ +++FKDDSSP AWD S WVR+YALFLEERLECFRVLKYDIE +R
Sbjct:   94 VIHRLLRDGDPTFREELLNFSQ-KGRIMQISNFKDDSSPVAWDCSGWVRTYALFLEERLECFRVLKYDIEAER 165          
The following BLAST results are available for this feature:
BLAST of DY270439 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
CAP10_ARATH4.454e-3286.49Putative clathrin assembly protein At5g35200 OS=Ar... [more]
CAP7_ARATH7.615e-2471.23Putative clathrin assembly protein At5g57200 OS=Ar... [more]
CAP6_ARATH7.615e-2469.86Putative clathrin assembly protein At4g25940 OS=Ar... [more]
CAP8_ARATH4.936e-2369.86Putative clathrin assembly protein At2g01600 OS=Ar... [more]
CAP9_ARATH4.179e-2265.75Putative clathrin assembly protein At1g14910 OS=Ar... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAP6YJ21FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY270439 ID=DY270439; Name=DY270439; organism=Citrus clementina; type=EST; length=1072bp
GTTATTCATCGCGTCTTGAGGGAAGTGGACCCCACATTTCATGAAGAAGT
CATTAATTACGGCCGAAGCAGGAGCCATATGCTTAACATGGCTCATTTTA
AAGATGATTCGAGCCCTAATGCATGGGATTATTCTGCCTGGGTGCGCTCT
TATGCCTTATTTTTGGAGGAGAGGCTGGAATGTTTCCGTGTGTTGAAGTA
TGACATTGAGACAGATCGTCCTGTAAGAAATTTTTATCTTTAGTGATCAT
TTAATTTCGATTTTTTCAACTTGATCTGTATCGTTATTATTTATATCTGT
GGAAGAATTAATTGCTACATTCCATTTCACTATGACATCTAACCATTCAG
TTAATTCAATCTGTTTTAATGGGTTAGGCTTTGATGCATTTAAAAGAAGA
GGAATTAAAAAGAACTGCTTAAATTCAAACAGACAGGAAATTATGTTAGA
TATTATTTGAATTAAAAGAGAAAATTATGTTAGACATTATTTGAATTAAA
AGAGAAGATTTTTTTAGATAATAAGTTTTCAGTAAACAGATGCTACAGTT
ACTACTATCCCTCTTATGCTTTGGAACTAGATTGGATAAGTTTGTAGTTT
TTTGACCCATTAACTCGATGAATAATTGGAACTTGCAGTTGTACAATCTA
TTCCCCTTTCCCTCCCCCAGCATTCTCTTTTTTATTTGCAAAAGGACGTC
ATCTCATCTTCCTTTCATAAACTTTTCAATATGTTTTTCTAAAAGCTGTG
GTGTTGTTAGAAACATGTTGTTGTTGTAGATTCTATTTAAGCCAAATGAA
AAACATAAAGGGCAAAATGAGAAAAGTTCCTAACACATTACAGCTTTGAT
GCAGAGAACCAAAGATTTGGAAACTGGCGAAATGGCTGGAACATTTACCA
ACTTTGCAACTGCTTCTTTTTCCGGGGCCTGGGCTGTTAGGGAATTTCTT
GGGAAGCGGTCATTAAACCCATCATGCCCTTTTTTTCCCCAAAAATGAAT
TTAGGCCTGTTAACTTGCAAAATGAAGGGGTTTTGATTGGCCACCTCAAC
CCCTAACCCCCCCCTTTTTTAC
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