DY270459

Overview
NameDY270459
Unique NameDY270459
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1203
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10189 contig Ccv1_Contig10189:17..1220. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY270459 vs. ExPASy Swiss-Prot
Match: HMGL_IPONI (HMG1/2-like protein OS=Ipomoea nil PE=2 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 3.750e-30
Identity = 74/132 (56.06%), Postives = 88/132 (66.67%), Query Frame = 1
Query:  130 MKGGRSKADAVGTDSKLKSKGARAGKRTXXXXXXXXXXXXXXXXSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSDDEKAPFVEKAEKRKSDYNKNMQDYNKQLADGVNAAEENESDKSKSEVN 525
            MKGG+SKA +   D+KL  K  +A                    SAFFVFME+FRK +KE HPNNKSVA VGKA G+KWK ++  EKAPF+ KAEKRK +Y KN+Q YNK+ A G  AAEE ESDKS+SEVN
Sbjct:    1 MKGGKSKAKS---DNKLAVK-KQAADTKKTKKAVKDPNKPKRPPSAFFVFMEDFRKTYKEKHPNNKSVAVVGKAGGDKWKQLTAAEKAPFISKAEKRKQEYEKNLQAYNKKQAAG--AAEEEESDKSRSEVN 126          
BLAST of DY270459 vs. ExPASy Swiss-Prot
Match: HMGL_SOYBN (HMG1/2-like protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 4.898e-30
Identity = 70/136 (51.47%), Postives = 86/136 (63.24%), Query Frame = 1
Query:  130 MKGGRSKADAVGTDSKL----KSKGARAGKRTXXXXXXXXXXXXXXXXSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSDDEKAPFVEKAEKRKSDYNKNMQDYNKQLADGVNAAEENESDKSKSEVN 525
            MKGG+SK ++   D KL    K    +A K                  SAFFVFMEEFRK F + HP NK+V+ VGKAAG KWK+MSD EKAP+V K+EKRK +Y KNM+ YNK+ A+G    +E ES+KS SEVN
Sbjct:    1 MKGGKSKTESKRADPKLAVNKKGAATKARKPAGKGKAAKDPNKPKRPPSAFFVFMEEFRKVFNKEHPENKAVSAVGKAAGAKWKTMSDAEKAPYVAKSEKRKVEYEKNMRAYNKKQAEGPTGGDEEESEKSVSEVN 136          
BLAST of DY270459 vs. ExPASy Swiss-Prot
Match: HMGL_VICFA (HMG1/2-like protein OS=Vicia faba PE=2 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 6.620e-27
Identity = 67/137 (48.91%), Postives = 89/137 (64.96%), Query Frame = 1
Query:  130 MKGGRSKADAVGTDSKL--KSKGARA---GKRTXXXXXXXXXXXXXXXXSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSDDEKAPFVEKAEKRKSDYNKNMQDYNKQLADGVNAAEENESDKSKSEVN 525
            MKGG+SK ++   ++KL    KGA A   GK+                 SAFFVFM +FR+Q+K+ HPNNKSVA VGKA GE+WKS+S++EKAP+V++A K+K +Y   +Q YNK+L       +E  SDKSKSEVN
Sbjct:    1 MKGGKSKGESKKAETKLAVNKKGAAATKGGKKPAKGKEPKDPNKPKRPPSAFFVFMADFREQYKKDHPNNKSVAAVGKACGEEWKSLSEEEKAPYVDRALKKKEEYEITLQAYNKKLE---GKDDEEGSDKSKSEVN 134          
BLAST of DY270459 vs. ExPASy Swiss-Prot
Match: MNB1B_MAIZE (DNA-binding protein MNB1B OS=Zea mays GN=MNB1B PE=1 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 1.926e-26
Identity = 71/142 (50.00%), Postives = 86/142 (60.56%), Query Frame = 1
Query:  130 MKGGRSKADAVGTDSKL--KSKGARAGKRTXXXXXXXXXXXXXXXXSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSDDEKAPFVEKAEKRKSDYNKNMQDYNKQLADGVNAA--------EENESDKSKSEVN 525
            MKG +SK  A   D+KL  KSKGA    +                 SAFFVFMEEFRK+FKE +P NKSVA VGKAAG++WKS+S+ +KAP+V KA K K +YNK +  YNK  +     A        +E ESDKSKSEVN
Sbjct:    1 MKGAKSKG-AAKADAKLAVKSKGAEKPAKGRKGKAGKDPNKPKRAPSAFFVFMEEFRKEFKEKNPKNKSVAAVGKAAGDRWKSLSESDKAPYVAKANKLKLEYNKAIAAYNKGESTAAKKAPAKEEEEEDEEESDKSKSEVN 141          
BLAST of DY270459 vs. ExPASy Swiss-Prot
Match: HMGL_WHEAT (HMG1/2-like protein OS=Triticum aestivum PE=2 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 1.057e-24
Identity = 70/146 (47.95%), Postives = 86/146 (58.90%), Query Frame = 1
Query:  130 MKGGRSKADAVGTDSKL--KSKGA-RAGKRTXXXXXXXXXXXXXXXXSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSDDEKAPFVEKAEKRKSDYNKNMQDYN-----------KQLADGVNAAEENESDKSKSEVN 525
            MKG +SK  A   D+KL  KSKGA +   +                 SAFFVFM EFR++FK+ +P NKSVA VGKAAGE+WKS+S+ EKAP+V KA K K +YNK +  YN           K  A  V   +E ESDKSKSE+N
Sbjct:    1 MKGAKSKG-AAKADAKLAVKSKGAEKPAAKGKKGKAGKDPNKPKRAPSAFFVFMGEFREEFKQKNPKNKSVAAVGKAAGERWKSLSESEKAPYVAKANKLKGEYNKAIAAYNKGESAAAAAPKKAAAKEVEEEDEEESDKSKSEIN 145          
BLAST of DY270459 vs. ExPASy Swiss-Prot
Match: HMGB3_BOVIN (High mobility group protein B3 OS=Bos taurus GN=HMGB3 PE=2 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 1.026e-11
Identity = 48/136 (35.29%), Postives = 67/136 (49.26%), Query Frame = 1
Query:  145 SKADAVGTDSKLKSKG-ARAGKRTXXXXXXXXXXXXXXXXSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSDDEKAPFVEKAEKRKSDYNKNMQDY-NKQLADGVNAA---------EENESDKSKSE 519
            +KAD V  D ++K  G A+ GK+                 S FF+F  EFR + K A+P   S+  V K  GE W ++SD EK P++ KA K K  Y K++ DY +K   DG   A         EE+E D+ + E
Sbjct:   64 AKADKVRYDREMKDYGPAKGGKKKKDPNAPKRPP------SGFFLFCSEFRPKIKSANPGI-SIGDVAKKLGEMWNNLSDSEKQPYINKAAKLKEKYEKDVADYKSKGKFDGAKGAAKVARKKVEEEDEEDEEEEE 192          
The following BLAST results are available for this feature:
BLAST of DY270459 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
HMGL_IPONI3.750e-3056.06HMG1/2-like protein OS=Ipomoea nil PE=2 SV=1[more]
HMGL_SOYBN4.898e-3051.47HMG1/2-like protein OS=Glycine max PE=2 SV=1[more]
HMGL_VICFA6.620e-2748.91HMG1/2-like protein OS=Vicia faba PE=2 SV=1[more]
MNB1B_MAIZE1.926e-2650.00DNA-binding protein MNB1B OS=Zea mays GN=MNB1B PE=... [more]
HMGL_WHEAT1.057e-2447.95HMG1/2-like protein OS=Triticum aestivum PE=2 SV=1[more]
HMGB3_BOVIN1.026e-1135.29High mobility group protein B3 OS=Bos taurus GN=HM... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAP6YK18FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY270459 ID=DY270459; Name=DY270459; organism=Citrus clementina; type=EST; length=1203bp
CCTTTTGTCTTCCTTAAACCCTAACCTCACCAGGTAACTCGCTGAGTCTC
TCCGGCGCTGACTCATCCGAGTCACCCCGATTTTCACCGATTCTCACCGG
TTTGCGTCATTTTTAGTGCAGGATTCATCATGAAAGGAGGCAGATCGAAA
GCTGACGCGGTAGGAACTGATAGCAAGCTGAAGAGCAAAGGGGCGAGAGC
CGGCAAGCGAACAGCGAAGCCCAAGGCTGCGAAAGATCCAAACAAGCCGA
AGAGGCCTCCTAGTGCTTTCTTCGTTTTCATGGAGGAGTTCAGGAAGCAG
TTCAAAGAAGCTCATCCTAACAATAAATCTGTTGCTACTGTTGGCAAAGC
TGCTGGAGAAAAATGGAAGTCAATGTCAGATGATGAGAAAGCGCCATTTG
TTGAAAAGGCTGAGAAAAGAAAGTCTGATTACAACAAGAACATGCAGGAT
TACAACAAGCAGTTGGCTGATGGAGTAAATGCTGCTGAGGAAAATGAATC
TGACAAGTCCAAGTCTGAAGTGAATGATGAGGATGATGAAGAAGGCAGTG
GAGAGGAGGAAGATGATGATTAGAGAATGGCAGCGAAGGATTCAAAAAGT
TGAAGTTTTAGCAATCTAGTAGAATTGCTTATAACATGATAACCCTTAGC
CTTTTAGATTAGATTAGGAAAGAAATCAAGTGTTGTTCAGGATTTACTGA
AGCACCATATCCGATGGATACCGTACCTAAATGTTCTCTTAAGTCTTTAA
TCCATCCAGTTTTCACATTTATATGTTATTATTTTATTTGTCCATCCTGT
TGCTTTATTCAGTTATTTTTTCTGGTGGGGGCCCATGGGCCCCGGGCTGG
TGGGTTGCTTTTAAATGGCAATTGGGCAATTAAACAATTTTGGGTTTCAG
GCGGGCATTGCCCAACCGAAAATATTTAAAATTTGGAACCACCCATTGGG
TTGGTTTGGTTAAAAAAAAAAAAAAAAAAAACCCAACTTTTCCTTGTCTA
AGTTTGGCCCTTTACAAAAAACCTTGCCCTTACACTATTTTGTTGCACCG
AAACGAGGACCAAGACAGGCCAAAAAAAAATCAAATTTTTTTTTCCCCCC
CCGCTGTAATATCCCCCCCCAAATAGAAATTATCTAATTAATGGGTACGC
CAGACCTGTGTTTCGTTGGATGCACTCCCCCCTCGGCCCCACGAATGGCT
CCA
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