DY270574

Overview
NameDY270574
Unique NameDY270574
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1239
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DY270574 vs. ExPASy Swiss-Prot
Match: U497V_ARATH (UPF0497 membrane protein At4g25830 OS=Arabidopsis thaliana GN=At4g25830 PE=2 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 9.225e-24
Identity = 50/90 (55.56%), Postives = 65/90 (72.22%), Query Frame = 2 
Query:  329 WYDMYIF*KMVVYIAFGTNSAAVEHSVLALSGMKEFQWMKWCNKFTRFCFQIGGALVSGYAACALMVLATSISAFNLFRLYSSEKFLRLK 598
            W+  Y+  +   Y+ F   SAA +HS+L ++G +E QWMKWC KFTRFCFQ+G A++  Y A ALMVL +SISAFNLFRLYS ++F R K
Sbjct:   84 WFS-YLLDQTAAYVVFAGTSAAAQHSLLVVTGSRELQWMKWCYKFTRFCFQMGSAIILNYIAAALMVLLSSISAFNLFRLYSPKRFFRFK 172
[Close]
BLAST of DY270574 vs. ExPASy Swiss-Prot
Match: XL3_GOSHI (UPF0497 membrane protein xl3 OS=Gossypium hirsutum GN=XL3 PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 1.332e-22
Identity = 51/86 (59.30%), Postives = 61/86 (70.93%), Query Frame = 2 
Query:  341 YIF*KMVVYIAFGTNSAAVEHSVLALSGMKEFQWMKWCNKFTRFCFQIGGALVSGYAACALMVLATSISAFNLFRLYSSEKFLRLK 598
            YI  + VVY  F  N AA+EHS L L+G + FQW+KWCNK+TRFC QIGG+L+ G+ A  LM    SISAFNLFR YS  KF+ LK
Sbjct:   94 YILDQAVVYAVFAGNLAALEHSFLVLTGEENFQWLKWCNKYTRFCTQIGGSLLCGFVASLLMFSIASISAFNLFRQYSPTKFMHLK 179
[Close]
BLAST of DY270574 vs. ExPASy Swiss-Prot
Match: U497D_VITVI (UPF0497 membrane protein 13 OS=Vitis vinifera GN=GSVIVT00031388001 PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 4.738e-20
Identity = 45/86 (52.33%), Postives = 64/86 (74.42%), Query Frame = 2 
Query:  341 YIF*KMVVYIAFGTNSAAVEHSVLALSGMKEFQWMKWCNKFTRFCFQIGGALVSGYAACALMVLATSISAFNLFRLYSSEKFLRLK 598
            ++  +  VY  F  N+AA++ S++A++G    QWMK CN++TRFC Q+GGAL+SGY A  LMVL +S+SAF+LFRLYS ++F  LK
Sbjct:  119 FLLDQAAVYTVFSANTAALQASIIAVTGESSLQWMKVCNRYTRFCIQVGGALLSGYLASLLMVLLSSLSAFSLFRLYSPKQFHLLK 204
[Close]
BLAST of DY270574 vs. ExPASy Swiss-Prot
Match: U4978_SOYBN (UPF0497 membrane protein 8 OS=Glycine max PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 1.055e-19
Identity = 45/82 (54.88%), Postives = 63/82 (76.83%), Query Frame = 2 
Query:  353 KMVVYIAFGTNSAAVEHSVLALSGMKEFQWMKWCNKFTRFCFQIGGALVSGYAACALMVLATSISAFNLFRLYSSEKFLRLK 598
            ++ VY+ F  N+A +  +VLA+SG + FQW+K C+KFTRFC +IGGAL+ GYAA  LM L ++ISA+ +FR+YS + FLRLK
Sbjct:   97 QIAVYMTFAANTATMGAAVLAISGSEAFQWLKVCDKFTRFCVEIGGALLCGYAASMLMALISTISAYKVFRMYSPKWFLRLK 178
The following BLAST results are available for this feature:
BLAST of DY270574 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
U497V_ARATH9.225e-2455.56UPF0497 membrane protein At4g25830 OS=Arabidopsis ... [more]
XL3_GOSHI1.332e-2259.30UPF0497 membrane protein xl3 OS=Gossypium hirsutum... [more]
U497D_VITVI4.738e-2052.33UPF0497 membrane protein 13 OS=Vitis vinifera GN=G... [more]
U4978_SOYBN1.055e-1954.88UPF0497 membrane protein 8 OS=Glycine max PE=2 SV=... [more]
back to top
Properties
Property NameValue
Genbank descriptionKN0AAP7YA15FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY270574 ID=DY270574; Name=DY270574; organism=Citrus clementina; type=EST; length=1239bp
GTTGCTTCAGCTGCTTCGGGTTATAATCTTCTTCAACTGGGTAGAAGTGT
CTTCGTGAGCCGCTATCTGGGAAACTCAAAGGGGTCTTACAGATATCTGG
CTTGGGTTTCTTATTTGTTGGACCAGGTAAATTTCCCTTTCCTCAAGTTA
AATTCTGTTAAATTGAGATCATACCTAAAGAAAATATTGTGTTCGAAATC
AATTTTTTGGAAGCAAAACACAAACTGTGAGATGCCAATTAATGTGCCGT
TAGTTTTTTTTTGGCTTGCCTGTGTACAAAAAAATATTTTGTACCCTCAT
GGTAATTGTACAACTAGCTGGCCAATAATGGTATGACATGTATATTTTTT
AAAAGATGGTAGTGTACATAGCATTTGGCACAAACTCAGCAGCAGTTGAG
CACTCAGTACTGGCACTAAGTGGCATGAAGGAATTTCAGTGGATGAAATG
GTGCAACAAGTTTACCAGATTCTGCTTCCAGATCGGGGGGGCTCTGGTAA
GTGGCTACGCAGCTTGTGCTCTAATGGTTTTAGCGACATCCATCTCAGCC
TTCAATTTGTTTAGGCTCTATTCATCAGAAAAATTTCTGCGCTTAAAGAG
CACATGATGAATTTGTATCTTTACTTCCTCTTCTTCCAAGAAACTGCATT
TTACTATCCTTATCATAAAAGTCACAGTTTACTTTTTGTCAAAAAAAAAA
AAAACAAAAAAAAAAAAAAAAAAAAAACCCCCACCTTTTTTTGATCAATT
TGGGCTTTTAAAAAAAAGCTTTGTTTCCATTTTTTTGCCCCCAACCGGGT
CCCATCACTCCAAAAAAAAACCATATTTTGCCACCCACCCAAATCCCCCA
AAAGGGAGTCCATATCCAGCGGCCAAGCCGTTCTCCCGCCCCCCCCGGCC
CCGCTTTCCCACACCCCCAATGTATCCTCCCACCACAAAAAAAAAAAACT
CCCCCGTTTAAAAAACATCCTCCCCGCTTCCTAATGACACCCCTCCTCTT
TTCCTCTCACCCGGCTTACCACATCCCCATCTCTTTTGAAAAACCAACTC
TTTTCCTACCGCTTTCGACAATAATTCACCCCCCCTTCTTTTCCCTTTTC
CCAACGTAACTCTCCCTTTCTTTTCTCCCCCCGCGCCCTTCTCCCCCTCC
CTCCCCCCCCCTCCACCCTCTGCCTGCGTTTCCCCCTTTCTTATCCCCCC
CTTCCCACCTCACAAACAACACAAAACATATTCTATACT
back to top