DY270587

Overview
NameDY270587
Unique NameDY270587
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1162
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY270587 vs. ExPASy Swiss-Prot
Match: TMM85_DANRE (Transmembrane protein 85 OS=Danio rerio GN=tmem85 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 4.677e-14
Identity = 48/160 (30.00%), Postives = 81/160 (50.62%), Query Frame = 1
Query:   58 RWAVDFT-DNSTTPSTR-----DIADPPGFSRASQDQDDSTLSRQKKDAEANWKSQKAWEVAQAPFKNLXXXXXXXXXAGSTVHLFSIGITFSALWQPISALQGVGKVFEPYKDSKVDLLGPKLLFIALNLGGLALGVWKLNTLGLLPTHASDWVSSLPP 519
            +WAV+ +  NS + S R     D+  P G+S      D        ++A+ N   ++ W+VA  P K +         +G+T+ +F I +     W+PI AL  +   F+  + S    L   L+++  NL G AL ++K  ++GLLPTH+SDW++ + P
Sbjct:   24 KWAVELSLGNSRSRSDRQGKDGDVMYPVGYS------DKPVPDTSVQEADRNLVEKRCWDVALGPLKQIPMNLFIMYMSGNTISIFPIMMVCMMAWRPIQALMSMSATFKLLESSSQQWL-QGLVYLIGNLLGSALAIYKCQSMGLLPTHSSDWLAFIEP 176          
BLAST of DY270587 vs. ExPASy Swiss-Prot
Match: TMM85_XENLA (Transmembrane protein 85 OS=Xenopus laevis GN=tmem85 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 2.321e-13
Identity = 50/167 (29.94%), Postives = 80/167 (47.90%), Query Frame = 1
Query:   40 VMGSGRR--WAVDFTDNSTTP-----STRDIADPPGFSRASQDQDDSTLSRQKKDAEANWKSQKAWEVAQAPFKNLXXXXXXXXXAGSTVHLFSIGITFSALWQPISALQGVGKVFEPYKDSKVDLLGPKLLFIALNLGGLALGVWKLNTLGLLPTHASDWVSSLPP 519
            V   GRR  WA++F    +         +D   P G+S      D        ++++     ++ W++A  P K +         AG+T+ +F I +     W+PI AL      F+  + S    L   L+++  NL GLALGV+K  ++GLLPTHASDW++ + P
Sbjct:    8 VTNRGRRFKWAIEFGSGGSRGRGERGGLQDSMYPVGYS------DKQVPDTSVQESDHILVEKRCWDIALGPLKQIPMNLFIMYMAGNTISIFPIMMVCMMAWRPIQALLATPATFKLLESSGQRFL-QGLVYLIGNLLGLALGVYKCQSMGLLPTHASDWLAFIEP 167          
BLAST of DY270587 vs. ExPASy Swiss-Prot
Match: TMM85_BOVIN (Transmembrane protein 85 OS=Bos taurus GN=TMEM85 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 2.321e-13
Identity = 56/186 (30.11%), Postives = 86/186 (46.24%), Query Frame = 1
Query:   28 KGKGVMGSGRR--WAVDFTDNSTTPSTRDIADPPGFSRASQD----QDDST-----LSRQKKDAEANWKSQ-----KAWEVAQAPFKNLXXXXXXXXXAGSTVHLFSIGITFSALWQPISALQGVGKVFEPYKDSKVDLLGPKLLFIALNLGGLALGVWKLNTLGLLPTHASDWVSSL-PPALVQF 534
            +G  V   GRR  WA++            ++ P G SR   D    Q DS      L +Q  D       +     + W++A  P K +         AG+T+ +F   +     W+PI AL  +   F+  + S    L   L+++  NL GLAL V+K  ++GLLPTHASDW++ + PP  ++F
Sbjct:    4 QGSLVANRGRRFKWAIE------------LSGPGGGSRGRSDRGGGQGDSLYPVGYLDKQVPDTSVQETDRILVEKRCWDIALGPLKQIPMNLFIMYMAGNTISIFPTMMVCMMAWRPIQALMAISATFKMLESSSQKFL-QGLVYLIGNLMGLALAVYKCQSMGLLPTHASDWLAFIEPPERMEF 176          
BLAST of DY270587 vs. ExPASy Swiss-Prot
Match: TMM85_PONAB (Transmembrane protein 85 OS=Pongo abelii GN=TMEM85 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 3.959e-13
Identity = 56/186 (30.11%), Postives = 86/186 (46.24%), Query Frame = 1
Query:   28 KGKGVMGSGRR--WAVDFTDNSTTPSTRDIADPPGFSRASQD----QDDST-----LSRQKKDAEANWKSQ-----KAWEVAQAPFKNLXXXXXXXXXAGSTVHLFSIGITFSALWQPISALQGVGKVFEPYKDSKVDLLGPKLLFIALNLGGLALGVWKLNTLGLLPTHASDWVSSL-PPALVQF 534
            +G  V   GRR  WA++            ++ P G SR   D    Q DS      L +Q  D       +     + W++A  P K +         AG+T+ +F   +     W+PI AL  +   F+  + S    L   L+++  NL GLAL V+K  ++GLLPTHASDW++ + PP  ++F
Sbjct:    4 QGGLVANRGRRFKWAIE------------LSGPGGGSRGRSDRGSGQGDSLYPVGYLDKQVPDTSVQETDRILVEKRCWDIALGPLKQIPMNLFIMYMAGNTISIFPTMMVCMMAWRPIQALMAISATFKMLESSSQKFL-QGLVYLIGNLMGLALAVYKCQSMGLLPTHASDWLAFIEPPERMEF 176          
BLAST of DY270587 vs. ExPASy Swiss-Prot
Match: TMM85_MOUSE (Transmembrane protein 85 OS=Mus musculus GN=Tmem85 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 3.959e-13
Identity = 56/186 (30.11%), Postives = 86/186 (46.24%), Query Frame = 1
Query:   28 KGKGVMGSGRR--WAVDFTDNSTTPSTRDIADPPGFSRASQD----QDDST-----LSRQKKDAEANWKSQ-----KAWEVAQAPFKNLXXXXXXXXXAGSTVHLFSIGITFSALWQPISALQGVGKVFEPYKDSKVDLLGPKLLFIALNLGGLALGVWKLNTLGLLPTHASDWVSSL-PPALVQF 534
            +G  V   GRR  WA++            ++ P G SR   D    Q DS      L +Q  D       +     + W++A  P K +         AG+T+ +F   +     W+PI AL  +   F+  + S    L   L+++  NL GLAL V+K  ++GLLPTHASDW++ + PP  ++F
Sbjct:    4 QGGLVANRGRRFKWAIE------------LSGPGGGSRGRSDRGSGQGDSLYPVGYLDKQVPDTSVQETDRILVEKRCWDIALGPLKQIPMNLFIMYMAGNTISIFPTMMVCMMAWRPIQALMAISATFKMLESSSQKFL-QGLVYLIGNLMGLALAVYKCQSMGLLPTHASDWLAFIEPPERMEF 176          
BLAST of DY270587 vs. ExPASy Swiss-Prot
Match: TMM85_HUMAN (Transmembrane protein 85 OS=Homo sapiens GN=TMEM85 PE=1 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 3.959e-13
Identity = 56/186 (30.11%), Postives = 86/186 (46.24%), Query Frame = 1
Query:   28 KGKGVMGSGRR--WAVDFTDNSTTPSTRDIADPPGFSRASQD----QDDST-----LSRQKKDAEANWKSQ-----KAWEVAQAPFKNLXXXXXXXXXAGSTVHLFSIGITFSALWQPISALQGVGKVFEPYKDSKVDLLGPKLLFIALNLGGLALGVWKLNTLGLLPTHASDWVSSL-PPALVQF 534
            +G  V   GRR  WA++            ++ P G SR   D    Q DS      L +Q  D       +     + W++A  P K +         AG+T+ +F   +     W+PI AL  +   F+  + S    L   L+++  NL GLAL V+K  ++GLLPTHASDW++ + PP  ++F
Sbjct:    4 QGGLVANRGRRFKWAIE------------LSGPGGGSRGRSDRGSGQGDSLYPVGYLDKQVPDTSVQETDRILVEKRCWDIALGPLKQIPMNLFIMYMAGNTISIFPTMMVCMMAWRPIQALMAISATFKMLESSSQKFL-QGLVYLIGNLMGLALAVYKCQSMGLLPTHASDWLAFIEPPERMEF 176          
BLAST of DY270587 vs. ExPASy Swiss-Prot
Match: TMM85_XENTR (Transmembrane protein 85 OS=Xenopus tropicalis GN=tmem85 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.152e-12
Identity = 49/167 (29.34%), Postives = 79/167 (47.31%), Query Frame = 1
Query:   40 VMGSGRR--WAVDFTDNSTTP-----STRDIADPPGFSRASQDQDDSTLSRQKKDAEANWKSQKAWEVAQAPFKNLXXXXXXXXXAGSTVHLFSIGITFSALWQPISALQGVGKVFEPYKDSKVDLLGPKLLFIALNLGGLALGVWKLNTLGLLPTHASDWVSSLPP 519
            V   GRR  WA++F    +         +D   P G+S      D        ++++     ++ W++A  P K +         AG+T+ +F I +     W+PI AL      F+  + S    L   L+++  NL GLAL V+K  ++GLLPTHASDW++ + P
Sbjct:    8 VANRGRRFKWAIEFGSGGSRGRGERGGLQDSMYPVGYS------DKQVPDTSVQESDHILVEKRCWDIALGPLKQIPMNLFIMYMAGNTISIFPIMMVCMMAWRPIQALLATPATFKLLESSGQRFL-QGLVYLIGNLLGLALAVYKCQSMGLLPTHASDWLAFIEP 167          
BLAST of DY270587 vs. ExPASy Swiss-Prot
Match: YQ13_SCHPO (Uncharacterized membrane protein C1281.03c OS=Schizosaccharomyces pombe GN=SPCC1281.03c PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 7.466e-12
Identity = 36/118 (30.51%), Postives = 65/118 (55.08%), Query Frame = 1
Query:  157 STLSRQKKDAEANWKSQKAWEVAQAPFKNLXXXXXXXXXAGSTVHLFSIGITFSALWQPISALQGVGKVFEPYKDSKVDLLGPKL-LFIALNLGGLALGVWKLNTLGLLPTHASDWVS 507
            S  ++++++ + +   +KAWE+A +P K +         +G+++ +FSI  T   L  P+ A+   G  F P+K +    L P +  +I   L  + +GV+KL  +GLLPT  SDW++
Sbjct:   57 SIFAKREEELQKDLLLKKAWELAYSPLKQIPMNAILAYMSGNSLQIFSIMTTLMLLVNPLKAITSTGSAFTPFKGTHPGTLWPAMGAYILFQLLLMGIGVYKLQRMGLLPTTTSDWLA 174          
BLAST of DY270587 vs. ExPASy Swiss-Prot
Match: TMM85_SALSA (Transmembrane protein 85 OS=Salmo salar GN=tmem85 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 7.466e-12
Identity = 40/138 (28.99%), Postives = 69/138 (50.00%), Query Frame = 1
Query:  106 DIADPPGFSRASQDQDDSTLSRQKKDAEANWKSQKAWEVAQAPFKNLXXXXXXXXXAGSTVHLFSIGITFSALWQPISALQGVGKVFEPYKDSKVDLLGPKLLFIALNLGGLALGVWKLNTLGLLPTHASDWVSSLPP 519
            D+  P G+S      D        ++ + N   ++ W+VA  P K +         +G+T+ +F I +     W+PI AL  +   F+  ++S    L   L++   NL G AL ++K  ++GLLPTH+SDW++ + P
Sbjct:   45 DVMYPIGYS------DKPVPDTSIQETDKNLVEKRCWDVALGPLKQIPMNLFIMYMSGNTISIFPIMMVCMMAWRPIQALMSMSATFKLLENSNQQWL-QGLVYSVGNLLGSALAIYKCQSMGLLPTHSSDWLAFIEP 175          
The following BLAST results are available for this feature:
BLAST of DY270587 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
TMM85_DANRE4.677e-1430.00Transmembrane protein 85 OS=Danio rerio GN=tmem85 ... [more]
TMM85_XENLA2.321e-1329.94Transmembrane protein 85 OS=Xenopus laevis GN=tmem... [more]
TMM85_BOVIN2.321e-1330.11Transmembrane protein 85 OS=Bos taurus GN=TMEM85 P... [more]
TMM85_PONAB3.959e-1330.11Transmembrane protein 85 OS=Pongo abelii GN=TMEM85... [more]
TMM85_MOUSE3.959e-1330.11Transmembrane protein 85 OS=Mus musculus GN=Tmem85... [more]
TMM85_HUMAN3.959e-1330.11Transmembrane protein 85 OS=Homo sapiens GN=TMEM85... [more]
TMM85_XENTR1.152e-1229.34Transmembrane protein 85 OS=Xenopus tropicalis GN=... [more]
YQ13_SCHPO7.466e-1230.51Uncharacterized membrane protein C1281.03c OS=Schi... [more]
TMM85_SALSA7.466e-1228.99Transmembrane protein 85 OS=Salmo salar GN=tmem85 ... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAP7YB11FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY270587 ID=DY270587; Name=DY270587; organism=Citrus clementina; type=EST; length=1162bp
TAATCTTTGAATCCATCGAAAATGGAAAAAGGCAAAGGAGTGATGGGTTC
CGGGCGAAGATGGGCTGTTGATTTCACCGACAATTCAACGACTCCTTCCA
CTCGCGACATCGCTGACCCTCCGGGCTTCTCTCGGGCTTCTCAAGATCAG
GATGATTCAACGCTAAGTCGTCAAAAGAAAGATGCCGAAGCCAATTGGAA
ATCTCAGAAAGCTTGGGAAGTGGCACAAGCCCCTTTCAAGAATCTGATGA
TGATGGGCTTTATGATGTGGATGGCGGGAAGTACTGTGCATCTGTTTAGC
ATTGGTATTACTTTTTCAGCTCTCTGGCAGCCTATAAGTGCTCTACAAGG
GGTTGGAAAGGTTTTTGAGCCTTACAAGGACAGTAAAGTAGATCTTCTGG
GACCCAAGTTGCTGTTCATTGCCCTTAACTTGGGAGGCTTAGCACTGGGT
GTTTGGAAGCTTAACACATTGGGGCTTCTTCCGACACATGCATCGGATTG
GGTTTCATCCTTACCCCCCGCTCTGGTTCAATTCTTCTTCCTTAACTCCC
CATCTGTCTTCCTTAAGCCCCTCCTCACCATAAAAATTTGAAAATTGAAT
TGAAGCAGATTATTATTTTGTTGAACTTTTATGGCCAGCTATTTAGATGA
TCATAATCACGCCATCAAAATTTTTCTACTATTGTCGTGTAATTGTATTA
ATTGTGACAGGGGTGAAGGTTCTTTAATACCTGGGTTCTCAAAATCCCTC
CATCACAGGTTTGCCCATTATAGCTTTCTTTAACATCAGTGATTTTCTGG
TCCATTCCAGGAGGTCGAATATTCGGGTGGTGCCATTCCCCCTGCATAAG
GAATATCAGTGGCTGTTCCCTTCGGTTTGTGATCCTTTGCCAAGTATTGG
AGTGAAAGGAAGTTCCCCCTTGCAAAACCTTGTTTTGTCTTTCTGGGGAA
CCTGTTCCTGGTCCAAGGGCTGTTAATTGATCCGCCTTTCTTGGTTATTA
AATCCGCCTTTCCCCCCCTTGGAAAACACCCCCCAAAAAGGTAATTTTTT
GAAACTTGGGTAAACCGAGAATTGTCTTCCCTCTTTAATTATAACCCCGG
TAAAATCCATTTTTAAAAAATATTTTTTTTTTATACCAAAAAAAAAATTT
ACCCTTTCCCCG
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