DY270621

Overview
NameDY270621
Unique NameDY270621
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length608
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY270621_ssr387 microsatellite DY270621_ssr387:387..416. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig3679 contig Ccv1_Contig3679:1..608. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of DY270621 vs. ExPASy Swiss-Prot
Match: Y516_SYNY3 (Uncharacterized protein slr0516 OS=Synechocystis sp. (strain PCC 6803) GN=slr0516 PE=4 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 4.473e-12
Identity = 37/75 (49.33%), Postives = 46/75 (61.33%), Query Frame = 2 
Query:  128 IDCSFCGADLRSAHLQTADLTNANLEGANLEGANLKGAKLRNANLKGANLQRAYLRHVNLRDTHLEGAKLDGANL 352
            +DC+  GADLR  +L+ A L  ++L GANL G NL+ A L  ANL GANL    L    L + +L GA L GANL
Sbjct:   41 LDCNLAGADLREFNLENARLNRSDLSGANLSGVNLRRALLDRANLTGANLSETDLTEAALTEANLAGADLSGANL 115
[Close]
BLAST of DY270621 vs. ExPASy Swiss-Prot
Match: Y1851_SYNY3 (Uncharacterized protein slr1851 OS=Synechocystis sp. (strain PCC 6803) GN=slr1851 PE=4 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 8.435e-11
Identity = 37/81 (45.68%), Postives = 49/81 (60.49%), Query Frame = 2 
Query:  104 ANLQDACMIDCSFCGADLRSAHLQTADLTNANLEGANLEGANLKGAKLRNANLKGANLQRAYLRHVNLRDTHLEGAKLDGA 346
            AN+ + C+I      ADL  A+L  ADLTNA+L GA L GA+L+ A L  A+L+GA+L+   L   NL +T    A L GA
Sbjct:   68 ANMTEVCLIYADLSNADLSGANLVGADLTNADLSGAKLGGADLRKANLSEASLRGADLRGVNLIEANLTNTDFSEADLTGA 148
The following BLAST results are available for this feature:
BLAST of DY270621 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
Y516_SYNY34.473e-1249.33Uncharacterized protein slr0516 OS=Synechocystis s... [more]
Y1851_SYNY38.435e-1145.68Uncharacterized protein slr1851 OS=Synechocystis s... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAP7YD07FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY270621 ID=DY270621; Name=DY270621; organism=Citrus clementina; type=EST; length=608bp
GGATGCTGAGGGTTCCATTTTTCACAATGCAACTTTGCGTGAATGTGAAT
TTGCTGGGGCAAACCTTCGTGGAGCTTTACTAGCTGGTGCAAATCTTCAG
AGTGCAAATTTACAAGATGCTTGCATGATAGACTGCAGCTTCTGTGGAGC
AGACCTGCGATCTGCACACTTACAGACTGCTGATCTTACTAATGCCAACC
TAGAGGGAGCTAATTTGGAAGGAGCTAATTTGAAGGGTGCAAAGCTACGT
AATGCCAATTTAAAGGGTGCCAACCTTCAAAGAGCTTATTTACGGCACGT
AAATCTTCGAGATACGCATCTGGAAGGTGCAAAGCTTGATGGCGCCAATC
TTCTTGGAGCAATACGATGACATTGAACTCCAAAGCTGTGTGTGTGTGTG
TGTGTGTGTGTGTGTGTATCCATCCTGTTTTCTATCGAGGCTGGTTGTAC
TACTCTTCTCTATGTTTAACATTTTCATTTTCCAATTCACAAATAAGGAG
AAAAGATAAAACATTTTCATTTTCAGCACCCTCTGTATTATGAAAATTAA
TGTGTGAATTGTTGTTAGTTGATGTAATTTATTTGATTGGCATGTTGGTT
TGTGTGAT
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