DY270864

Overview
NameDY270864
Unique NameDY270864
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1190
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY270864_ssr907 microsatellite DY270864_ssr907:907..916. BLAST: Citrus ESTs to Prunus persica proteins V1
DY270864_ssr1039 microsatellite DY270864_ssr1039:1039..1048. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of DY270864 vs. ExPASy Swiss-Prot
Match: LBD41_ARATH (LOB domain-containing protein 41 OS=Arabidopsis thaliana GN=LBD41 PE=2 SV=1)

HSP 1 Score: 219.164 bits (557), Expect = 3.909e-56
Identity = 105/156 (67.31%), Postives = 123/156 (78.85%), Query Frame = 3
Query:   51 MRVSCNGCRVLRKGCGENCSIRPCLQWIKSPQCQANATLFLAKFYGRAGLVNLINAGPQDLRPAIFKSLLYEACGRIVNPIYGSVGLMWSGRWHLCQAAVEAVFRGEPVTPLSSESA-------LQAGDIRHVSKDEXXXXXXXGSDKLHKVKSRR 497
            MR+SCNGCRVLRKGC E+CSIRPCL WIKSP+ QANAT+FLAKFYGRAGL+NLINAGP  LRP IF+SLL+EACGRIVNPIYGSVGL+WSG W LCQ AVEAV +GEPV  +++++A       L+  DIRH+SKD+       GS  L   K+RR
Sbjct:    1 MRMSCNGCRVLRKGCSEDCSIRPCLAWIKSPEAQANATVFLAKFYGRAGLMNLINAGPNHLRPGIFRSLLHEACGRIVNPIYGSVGLLWSGNWQLCQDAVEAVMKGEPVKEIATDAATIGQGPPLKIYDIRHISKDDNSAAAATGSTDLKLAKTRR 156          
BLAST of DY270864 vs. ExPASy Swiss-Prot
Match: LBD40_ARATH (LOB domain-containing protein 40 OS=Arabidopsis thaliana GN=LBD40 PE=2 SV=1)

HSP 1 Score: 218.009 bits (554), Expect = 8.707e-56
Identity = 106/151 (70.20%), Postives = 121/151 (80.13%), Query Frame = 3
Query:   51 MRVSCNGCRVLRKGCGENCSIRPCLQWIKSPQCQANATLFLAKFYGRAGLVNLINAGPQDLRPAIFKSLLYEACGRIVNPIYGSVGLMWSGRWHLCQAAVEAVFRGEPVTPLSSESAL---------QAGDIRHV-SKDEXXXXXXXGSDK 473
            MR+SCNGCRVLRKGC ENCSIRPCLQWIKS + QANAT+FLAKFYGRAGL+NL+N GP  LRPAIF+SLLYEACGRIVNPIYGSVGL+WSG WHLCQAAVEAV RG PVTP++ ++A+         +  DIRHV S+DE       G+ K
Sbjct:    1 MRMSCNGCRVLRKGCSENCSIRPCLQWIKSAESQANATVFLAKFYGRAGLMNLLNTGPDHLRPAIFRSLLYEACGRIVNPIYGSVGLLWSGNWHLCQAAVEAVMRGSPVTPIACDAAVTGQAPPFNNKLCDIRHVSSRDENVKRRSRGACK 151          
BLAST of DY270864 vs. ExPASy Swiss-Prot
Match: LBD42_ARATH (LOB domain-containing protein 42 OS=Arabidopsis thaliana GN=LBD42 PE=2 SV=1)

HSP 1 Score: 198.749 bits (504), Expect = 5.467e-50
Identity = 98/138 (71.01%), Postives = 110/138 (79.71%), Query Frame = 3
Query:   51 MRVSCNGCRVLRKGCGENCSIRPCLQWIKSPQCQANATLFLAKFYGRAGLVNLINAGPQDLRPAIFKSLLYEACGRIVNPIYGSVGLMWSGRWHLCQAAVEAVFRGEPV--TPLSSESAL-------QAGDIRHVSKD 437
            MR+SCNGCRVLRKGC ++C+IRPCLQWIKS   QANATLFLAKFYGRAGL+NLI +GP  LRPAIF+SLLYEACGRIVNP+ GSVGLMWSG W  CQAAV+AV  G P+  TPL S SA        +  DIRHV+KD
Sbjct:    1 MRISCNGCRVLRKGCNQDCTIRPCLQWIKSADSQANATLFLAKFYGRAGLLNLIESGPDHLRPAIFRSLLYEACGRIVNPVDGSVGLMWSGNWAQCQAAVDAVLNGLPITHTPLPSASASHQIIPPHRTYDIRHVAKD 138          
BLAST of DY270864 vs. ExPASy Swiss-Prot
Match: LBD38_ARATH (LOB domain-containing protein 38 OS=Arabidopsis thaliana GN=LBD38 PE=2 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 3.927e-40
Identity = 70/110 (63.64%), Postives = 93/110 (84.55%), Query Frame = 3
Query:   57 VSCNGCRVLRKGCGENCSIRPCLQWIKSPQCQANATLFLAKFYGRAGLVNLINAGPQDLRPAIFKSLLYEACGRIVNPIYGSVGLMWSGRWHLCQAAVEAVFRGEPVTPL 386
            +SCNGCRVLRKGC ENC +RPC+QWI+SP+ Q +AT+F+AKF+GRAGL++ I+A P+   PA+F+SLLYEACGR VNP+ G+VGL+W+G W++CQAAVE V RG  + P+
Sbjct:    1 MSCNGCRVLRKGCSENCILRPCIQWIESPEAQGHATVFVAKFFGRAGLMSFISAVPESQCPALFQSLLYEACGRTVNPVNGAVGLLWTGNWNVCQAAVETVLRGGSLKPI 110          
BLAST of DY270864 vs. ExPASy Swiss-Prot
Match: LBD37_ARATH (LOB domain-containing protein 37 OS=Arabidopsis thaliana GN=LBD37 PE=2 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 4.341e-39
Identity = 67/110 (60.91%), Postives = 91/110 (82.73%), Query Frame = 3
Query:   57 VSCNGCRVLRKGCGENCSIRPCLQWIKSPQCQANATLFLAKFYGRAGLVNLINAGPQDLRPAIFKSLLYEACGRIVNPIYGSVGLMWSGRWHLCQAAVEAVFRGEPVTPL 386
            +SCNGCRVLRKGC ENC +RPC+QWI++   Q +AT+F+AKF+GRAGL++ I+A P   RPA+F+SLLYEACGR VNP+ G++G++W+G W++CQAAVE V RG  + P+
Sbjct:    1 MSCNGCRVLRKGCSENCILRPCIQWIETADAQGHATVFVAKFFGRAGLMSFISAVPDSQRPALFQSLLYEACGRTVNPVNGAIGMLWTGNWNICQAAVETVLRGGSLRPI 110          
BLAST of DY270864 vs. ExPASy Swiss-Prot
Match: LBD39_ARATH (LOB domain-containing protein 39 OS=Arabidopsis thaliana GN=LBD39 PE=2 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 2.155e-38
Identity = 68/111 (61.26%), Postives = 92/111 (82.88%), Query Frame = 3
Query:   57 VSCNGCRVLRKGCGENCSIRPCLQWIKSPQCQANATLFLAKFYGRAGLVNLINAGPQDLRPAIFKSLLYEACGRIVNPIYGSVGLMWSGRWHLCQAAVEAVFRGEPVTPLS 389
            +SCNGCRVLRKGC E C +RPCLQWI+S + Q +AT+F+AKF+GRAGL++ I++ P+  RPA+F+SLL+EACGR VNP+ G+VG++W+  WH+CQAAVE V RG  + P+S
Sbjct:    1 MSCNGCRVLRKGCSETCILRPCLQWIESAESQGHATVFVAKFFGRAGLMSFISSVPELQRPALFQSLLFEACGRTVNPVNGAVGMLWTRNWHVCQAAVETVLRGGTLRPIS 111          
The following BLAST results are available for this feature:
BLAST of DY270864 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
LBD41_ARATH3.909e-5667.31LOB domain-containing protein 41 OS=Arabidopsis th... [more]
LBD40_ARATH8.707e-5670.20LOB domain-containing protein 40 OS=Arabidopsis th... [more]
LBD42_ARATH5.467e-5071.01LOB domain-containing protein 42 OS=Arabidopsis th... [more]
LBD38_ARATH3.927e-4063.64LOB domain-containing protein 38 OS=Arabidopsis th... [more]
LBD37_ARATH4.341e-3960.91LOB domain-containing protein 37 OS=Arabidopsis th... [more]
LBD39_ARATH2.155e-3861.26LOB domain-containing protein 39 OS=Arabidopsis th... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAP7YP20FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY270864 ID=DY270864; Name=DY270864; organism=Citrus clementina; type=EST; length=1190bp
TTTTCTCTCAGCTTCCTCTCAACTTTCTTGCTTCCCAAACATAACCAACC
ATGCGTGTGAGCTGCAACGGATGCCGCGTCCTGCGCAAAGGCTGCGGCGA
AAACTGCTCCATCAGACCTTGCCTTCAGTGGATTAAAAGCCCCCAGTGTC
AGGCCAACGCCACTCTTTTTCTCGCCAAATTCTACGGCCGCGCCGGCCTC
GTCAATCTCATCAATGCCGGTCCCCAAGACCTCCGTCCCGCTATTTTCAA
ATCGCTGCTCTACGAGGCCTGCGGCCGAATCGTGAACCCGATCTACGGTT
CCGTCGGGCTGATGTGGTCCGGACGCTGGCACCTCTGCCAAGCCGCTGTT
GAAGCTGTTTTCAGAGGCGAGCCGGTCACTCCTCTTTCGTCTGAGTCTGC
TCTTCAAGCCGGTGATATCCGCCACGTGTCCAAAGATGAGAGCTCCGCTG
CGGCGGCTGCAGGTTCTGATAAGCTTCACAAAGTCAAGTCTAGGAGATTC
CAAGCGCTCGGCTCCTAAACCCAAGTCGAATCCAGAGCGGGCTGCCGATG
CCAAGGTTGTTGAGCCCCCTGTTGGATAACCCCGGTGGCGAACCCCAACT
TTGCCGACCCCAAGCTGACTCCACACTCACACCGCATAAGGTTACTCTCT
TGTCTTTAAATAAGCATTATTTACGCTAATCTAAATTCAACTGACGAGTA
CATACATAACTAACATTCATCTTAAAACCCTCCTCAATCTTCTTCCTTTC
CAACCATCTCTAAACTCTCATTTCATAACATAACCACTCTTTTATCCCTA
TCTGTTAAGCCTTTAACCTCGCTCCCTCGCGCCCATCATCAGATCGCGGC
TCAATAAACTTACTCATAAACACTCTAGATATCAATTAACAACATCTACC
ACATCCCTCTCTCTCTCCTATTAACCTATTGAACACCAGACGCATCTAAA
GTCATCTACTATGCCTCTCCTCTACCACATCCCTGCCTAGATCTTTTTAT
TTATTATCTCCTATATTCTGATGTTACTTACTATATATTCTCTCTCTCTT
TATCTATCGTGTTCCTTTATATACAATCATTCCCCAACACTTCTACCCGA
ACACTTCTTCCTCATTAAATATCAATCCCTGACCACCGCATTGAAATACC
ATACACATGAGAAGTTATATAGCAAGAATAGAAACAGAGA
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