DY270865

Overview
NameDY270865
Unique NameDY270865
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1223
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY270865_ssr733 microsatellite DY270865_ssr733:733..744. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig3747 contig Ccv1_Contig3747:1..1223. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY270865 vs. ExPASy Swiss-Prot
Match: APC11_MOUSE (Anaphase-promoting complex subunit 11 OS=Mus musculus GN=Anapc11 PE=2 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 4.671e-36
Identity = 59/83 (71.08%), Postives = 70/83 (84.34%), Query Frame = 2
Query:  107 MKVKILQWHAVASWTWDAQDETCGICRMAFDGCCPDCKLPGDDCPLIWGACNHAFHLHCILKWVNSQTPQAHCPMCRRERQFK 355
            MKVKI  W+ VA+W W A DE CGICRMAF+GCCPDCK+PGDDCPL+WG C+H FH+HCILKW+N+Q  Q HCPMCR+E +FK
Sbjct:    1 MKVKIKCWNGVATWLWVANDENCGICRMAFNGCCPDCKVPGDDCPLVWGQCSHCFHMHCILKWLNAQQVQQHCPMCRQEWKFK 83          
BLAST of DY270865 vs. ExPASy Swiss-Prot
Match: APC11_BOVIN (Anaphase-promoting complex subunit 11 OS=Bos taurus GN=ANAPC11 PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 1.041e-35
Identity = 58/83 (69.88%), Postives = 70/83 (84.34%), Query Frame = 2
Query:  107 MKVKILQWHAVASWTWDAQDETCGICRMAFDGCCPDCKLPGDDCPLIWGACNHAFHLHCILKWVNSQTPQAHCPMCRRERQFK 355
            M+VKI  W+ VA+W W A DE CGICRMAF+GCCPDCK+PGDDCPL+WG C+H FH+HCILKW+N+Q  Q HCPMCR+E +FK
Sbjct:    1 MRVKIKCWNGVATWLWVANDENCGICRMAFNGCCPDCKVPGDDCPLVWGQCSHCFHMHCILKWLNAQQVQQHCPMCRQEWKFK 83          
BLAST of DY270865 vs. ExPASy Swiss-Prot
Match: APC11_PONAB (Anaphase-promoting complex subunit 11 OS=Pongo abelii GN=ANAPC11 PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 1.775e-35
Identity = 58/83 (69.88%), Postives = 70/83 (84.34%), Query Frame = 2
Query:  107 MKVKILQWHAVASWTWDAQDETCGICRMAFDGCCPDCKLPGDDCPLIWGACNHAFHLHCILKWVNSQTPQAHCPMCRRERQFK 355
            MKVKI  W+ VA+W W A DE CGICRMAF+GCCPDCK+PGDDCPL+WG C+H FH+HCILKW+++Q  Q HCPMCR+E +FK
Sbjct:    1 MKVKIKCWNGVATWLWVANDENCGICRMAFNGCCPDCKVPGDDCPLVWGQCSHCFHMHCILKWLHAQQVQQHCPMCRQEWKFK 83          
BLAST of DY270865 vs. ExPASy Swiss-Prot
Match: APC11_HUMAN (Anaphase-promoting complex subunit 11 OS=Homo sapiens GN=ANAPC11 PE=1 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 1.775e-35
Identity = 58/83 (69.88%), Postives = 70/83 (84.34%), Query Frame = 2
Query:  107 MKVKILQWHAVASWTWDAQDETCGICRMAFDGCCPDCKLPGDDCPLIWGACNHAFHLHCILKWVNSQTPQAHCPMCRRERQFK 355
            MKVKI  W+ VA+W W A DE CGICRMAF+GCCPDCK+PGDDCPL+WG C+H FH+HCILKW+++Q  Q HCPMCR+E +FK
Sbjct:    1 MKVKIKCWNGVATWLWVANDENCGICRMAFNGCCPDCKVPGDDCPLVWGQCSHCFHMHCILKWLHAQQVQQHCPMCRQEWKFK 83          
BLAST of DY270865 vs. ExPASy Swiss-Prot
Match: APC11_DICDI (Anaphase-promoting complex subunit 11 OS=Dictyostelium discoideum GN=anapc11 PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 2.652e-31
Identity = 56/87 (64.37%), Postives = 66/87 (75.86%), Query Frame = 2
Query:  107 MKVKILQ-WHAVASWTWDAQDETCGICRMAFDGCCPDCKLPGDDCPLIWGACNHAFHLHCILKWVNSQTPQAHCPMCRRERQFKGSE 364
            MKV I   W+ V++W WD  +E CGICRMAFDGCC DCK+PGDDCP +WG CNHAFH+HCILKW+N+   Q  CPMCR E +FK  E
Sbjct:    1 MKVTIKSIWNTVSAWHWDVNEECCGICRMAFDGCCVDCKIPGDDCPPVWGVCNHAFHMHCILKWLNANELQ-QCPMCRSEWRFKSDE 86          
BLAST of DY270865 vs. ExPASy Swiss-Prot
Match: APC11_SCHPO (Anaphase-promoting complex subunit 11 OS=Schizosaccharomyces pombe GN=apc11 PE=1 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 8.830e-27
Identity = 46/79 (58.23%), Postives = 59/79 (74.68%), Query Frame = 2
Query:  107 MKVKILQWHAVASWTWDA-QDETCGICRMAFDGCCPDCKLPGDDCPLIWGACNHAFHLHCILKWVNSQTPQAHCPMCRR 340
            MKVKIL++HA+A+WTWD  +D+ CGICR+ FDGCCP C  PGD+CP++WG C H FH HCI  W+ +   Q  CPM R+
Sbjct:    1 MKVKILRYHAIANWTWDTPKDDVCGICRVPFDGCCPQCTSPGDNCPIVWGKCKHIFHAHCIQNWLATSGSQGQCPMDRQ 79          
BLAST of DY270865 vs. ExPASy Swiss-Prot
Match: APC11_YEAST (Anaphase-promoting complex subunit 11 OS=Saccharomyces cerevisiae GN=APC11 PE=1 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 1.235e-20
Identity = 42/101 (41.58%), Postives = 60/101 (59.41%), Query Frame = 2
Query:  107 MKVKILQWHAVASWTW------------------DAQDETCGICRMAFDGCCPDCKLPGDDCPLIWGACNHAFHLHCILKWVNSQTPQAHCPMCRRERQFK 355
            MKVKI + H+V +W+W                  D  ++ CGICR +++G CP CK PGD CPL+ G C+H FH HCI +W+++ T +  CPMCR+  Q +
Sbjct:    1 MKVKINEVHSVFAWSWHIPSTSDEDAANNDPIGNDEDEDVCGICRASYNGTCPSCKFPGDQCPLVIGLCHHNFHDHCIYRWLDTPTSKGLCPMCRQTFQLQ 101          
BLAST of DY270865 vs. ExPASy Swiss-Prot
Match: RBX1_SCHPO (RING-box protein pip1 OS=Schizosaccharomyces pombe GN=pip1 PE=1 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 3.848e-14
Identity = 34/87 (39.08%), Postives = 50/87 (57.47%), Query Frame = 2
Query:  110 KVKILQWHAVASWTWDAQDETCGICRMAFDGCCPDCKLPGD-----DCPLIWGACNHAFHLHCILKWVNSQTPQAHCPMCRRERQFK 355
            + +I +W+AVA W WD   + C ICR      C +C+   D     +C + WG CNHAFH HCI +W+N++     CP+  RE +F+
Sbjct:   20 RFEIKKWNAVALWQWDIVVDNCAICRNHIMDLCIECQANTDSAAAQECTVAWGTCNHAFHFHCISRWLNTRNV---CPLDNREWEFQ 103          
BLAST of DY270865 vs. ExPASy Swiss-Prot
Match: RBX1_CAEEL (RING-box protein 1 OS=Caenorhabditis elegans GN=rbx-1 PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 3.848e-14
Identity = 34/89 (38.20%), Postives = 50/89 (56.18%), Query Frame = 2
Query:  104 KMKVKILQWHAVASWTWDAQDETCGICRMAFDGCCPDCKLPG-----DDCPLIWGACNHAFHLHCILKWVNSQTPQAHCPMCRRERQFK 355
            K + ++ +W AVA W WD Q + C ICR      C +C+        D+C + WG CNHAFH HCI +W+ ++     CP+  RE +F+
Sbjct:   21 KKRFEVKKWSAVALWAWDIQVDNCAICRNHIMDLCIECQANQAAGLKDECTVAWGNCNHAFHFHCISRWLKTRQV---CPLDNREWEFQ 106          
BLAST of DY270865 vs. ExPASy Swiss-Prot
Match: RBX1_SALSA (RING-box protein 1 OS=Salmo salar GN=rbx1 PE=2 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 8.572e-14
Identity = 32/90 (35.56%), Postives = 51/90 (56.67%), Query Frame = 2
Query:  101 TKMKVKILQWHAVASWTWDAQDETCGICRMAFDGCCPDCKL-----PGDDCPLIWGACNHAFHLHCILKWVNSQTPQAHCPMCRRERQFK 355
            +K + ++ +W+AVA W WD   + C ICR      C +C+        ++C + WG CNHAFH HCI +W+ ++     CP+  RE +F+
Sbjct:   18 SKKRFEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQV---CPLDNREWEFQ 104          
The following BLAST results are available for this feature:
BLAST of DY270865 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
APC11_MOUSE4.671e-3671.08Anaphase-promoting complex subunit 11 OS=Mus muscu... [more]
APC11_BOVIN1.041e-3569.88Anaphase-promoting complex subunit 11 OS=Bos tauru... [more]
APC11_PONAB1.775e-3569.88Anaphase-promoting complex subunit 11 OS=Pongo abe... [more]
APC11_HUMAN1.775e-3569.88Anaphase-promoting complex subunit 11 OS=Homo sapi... [more]
APC11_DICDI2.652e-3164.37Anaphase-promoting complex subunit 11 OS=Dictyoste... [more]
APC11_SCHPO8.830e-2758.23Anaphase-promoting complex subunit 11 OS=Schizosac... [more]
APC11_YEAST1.235e-2041.58Anaphase-promoting complex subunit 11 OS=Saccharom... [more]
RBX1_SCHPO3.848e-1439.08RING-box protein pip1 OS=Schizosaccharomyces pombe... [more]
RBX1_CAEEL3.848e-1438.20RING-box protein 1 OS=Caenorhabditis elegans GN=rb... [more]
RBX1_SALSA8.572e-1435.56RING-box protein 1 OS=Salmo salar GN=rbx1 PE=2 SV=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAP7YP21FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY270865 ID=DY270865; Name=DY270865; organism=Citrus clementina; type=EST; length=1223bp
CCTAATTTCAATTCTCCCGTAACCATAAAATTAATTTCAGGAAATTTGTC
AAGAATAATTCAGTTCGCCGTAACAACAGTCGAGTTCTGATTCGTGGGAG
ACGAAGATGAAAGTCAAGATCTTGCAGTGGCATGCTGTTGCTTCATGGAC
GTGGGATGCACAAGATGAAACATGTGGAATTTGCCGGATGGCCTTTGATG
GCTGTTGTCCTGATTGTAAACTACCCGGTGATGATTGCCCATTAATTTGG
GGTGCCTGCAACCATGCATTCCATCTTCATTGCATCTTGAAGTGGGTGAA
TTCTCAAACTCCTCAAGCACATTGTCCCATGTGCCGAAGGGAACGGCAAT
TCAAAGGATCAGAATGAGTACGGTTGAAGGCGAATCTACAAGCATCCAAA
CGTGCCTGCTATGAAACCTTCCAGCCCTTCTAGCTCTACAATCTTGATGA
GGAATTTGACTTCCATTTAACTTCACATTGAATTGCTCAGTATACTAAGA
AAGCAATGGCCAGTTTTACATCCATTACCTAAACTCGCGTGCAGCATGCA
TGATACATTTACGTAAGCACCTTGCATGCCAAACGCCTCCAAATCCAGTC
CACGCACAGAATACCCTACCGTCTCCCCCAAGCAAACCCGAAACAAGTTC
TGGCGGAATGATTAGTTTGTCAACATAGTAACACATACACTGAGACTGAG
TTCATTAACACGTCACACGCGCTTCCTTCCAAATCATCATCATCTCGTGA
AACCATAATCTTCACACTGGACTCTTCTACACTTCCCTCCCATTCCGCTC
TTCATAATACTAATCAGATATGCGACACTTGTTTCGATCTGCATGTCTCA
TCCTATGCCCCAAAATCACTCCTTCGTCATAGTCACCGCATAGTCGAGTT
AGAACATTCTCTTTATTGCTTATTTTTTTATCTTTCATCTCTCTGTCCAT
CTCCCCTCACTCCTTACCTCCTATACCCAGTAATACTCCTCCTCAAAGAC
AACTCACGTCTTTCACGACTACACAACACGACCCCAACCTCTCTGTATAT
AATATGATCTCGCCTCCTTGCCCTTTTTGCTCTATTCCTTTACCCTTTCT
GTCCCTCATCCTTCTCCCCCATGCATATCACCAACTTCCTTTCCTTAGCT
GCACAATGCACCACTCACATAGGTAGGCGGTATTACTTGTCATTATACTC
CTGTTCTTCACCAATGTTTTCAC
back to top