DY270870

Overview
NameDY270870
Unique NameDY270870
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1266
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY270870_ssr318 microsatellite DY270870_ssr318:318..332. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig15079 contig Ccv1_Contig15079:22..1287. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of DY270870 vs. ExPASy Swiss-Prot
Match: EDS5_ARATH (Enhanced disease susceptibility 5 OS=Arabidopsis thaliana GN=EDS5 PE=2 SV=1)

HSP 1 Score: 260.381 bits (664), Expect = 1.655e-68
Identity = 133/206 (64.56%), Postives = 154/206 (74.76%), Query Frame = 3 
Query:  351 RGGLEKQSIWSQMKEIVMFTGPATGLWLCGPLMSLIDTAVIGQGSSVELAALGPGTVMCDYLTYVFMFLSIATSNMVATSLARQDKNEVQHQISVLLFVGLACGFLMLLFTRFFGSWALTAFTGPRNVHLVPAANTYVQIRSFAWPAVLVGLVAQSGSLRHERFSGTSKSFGGWPCPKRVIGERAPLN--------LFWAMGIAGA 944
            RG L KQSIW QMKEIV FTGPA G+W+CGPLMSLIDT VIGQGSS+ELAALGPGTV+CD+++YVFMFLS+ATSNMVATSLA+QDK E QHQISVLLF+GL CG +MLL TR FG WA+TAFT  +N+ +VPAAN Y+QIR  AWP +LVGLVAQS SL      G   S+G    P + +     +N        LF   GIAGA
Sbjct:   87 RGDLVKQSIWEQMKEIVKFTGPAMGMWICGPLMSLIDTVVIGQGSSIELAALGPGTVLCDHMSYVFMFLSVATSNMVATSLAKQDKKEAQHQISVLLFIGLVCGLMMLLLTRLFGPWAVTAFTRGKNIEIVPAANKYIQIRGLAWPFILVGLVAQSASL------GMKNSWG----PLKALAAATIINGLGDTILCLFLGQGIAGA 282
The following BLAST results are available for this feature:
BLAST of DY270870 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
EDS5_ARATH1.655e-6864.56Enhanced disease susceptibility 5 OS=Arabidopsis t... [more]
back to top
Properties
Property NameValue
Genbank descriptionKN0AAP8YA02FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY270870 ID=DY270870; Name=DY270870; organism=Citrus clementina; type=EST; length=1266bp
CCTTCCCTCTTTCAAGTTTTGGTTTTGTACTAAAAAAAGTGAAAAAAAAA
AAACACTTAAAAATTCAAGAAAAAATGCAAATCAAAACCCTAATTCACCC
ATTGCAGGGATGCTCTCCATCTTTGATTATCTTGAACAAGACTCCAGCTC
TCGCTCGCTTTCAGAGCTCATTTTCACCACCAAGTTTACGTTTTTTTACA
ACAAATATCCTTCACAGAGGAGTTAAAACTAGCTGCATTAGTCCTGGGAA
AGAACTGATTTTTGATGAAAATTGTGACAATTCAATTTCTTTATCTAAGA
ATGAAGAAGAAAAGGAAGAGGAGGAGGAGGAGGTAGAAATGGAGGTGAAG
AGGGGAGGATTGGAGAAGCAGAGTATATGGAGTCAAATGAAGGAGATTGT
GATGTTTACAGGACCCGCCACAGGGCTTTGGCTCTGTGGGCCATTGATGA
GTCTCATTGATACTGCTGTTATTGGTCAAGGAAGCTCCGTCGAGCTTGCT
GCTCTAGGGCCAGGAACAGTTATGTGCGATTATTTGACTTACGTGTTCAT
GTTCCTTTCAATTGCAACTTCGAACATGGTTGCGACTTCCCTTGCCAGGC
AGGATAAAAATGAAGTGCAGCATCAAATATCAGTCTTGCTCTTTGTTGGG
TTGGCTTGTGGCTTCTTGATGCTTTTGTTTACAAGATTCTTTGGATCATG
GGCACTAACTGCTTTTACTGGGCCAAGGAATGTGCACTTGGTACCGGCAG
CAAATACATATGTTCAGATTCGAAGCTTTGCATGGCCAGCAGTTCTAGTT
GGATTGGTTGCTCAAAGTGGAAGTCTCCGGCATGAAAGATTCTCTGGGAC
CTCTAAAAGCTTTGGCGGTTGGCCATGCCCAAAAAGGGTAATCGGTGAAA
GAGCCCCTTTGAACCTTTTTTGGGCTATGGGCATTGCCGGGGCCACCATG
GGGCAACAAATGGTTCCCCCAGTTTGTTTCCGCCTTAATAAAAAAATTTC
ACTCCTCTGAAAAACAAAAGGGAAAAAATGCCCCTTCTCCTTTCTCCGGT
TTCCCTCCCCCCAAATTAAAACCTTGCCCCAAAAATACCTGGGAACCTTT
CCTTGGTTCCAGATTTTTATATAAAAAAAATAAAAAAATCCCAAAAAGGG
GTGGGTTTTTTTCTTCCCCCCCCCCCCTTATTAAATAATATTTTTTTTTC
CTTCCCCTCCCTCTATCTGAGAGGGGCCAACACACAAAAAAAAACATAGG
GGGGCGCCCCCCCCCC
back to top