DY270871

Overview
NameDY270871
Unique NameDY270871
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1185
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig3750 contig Ccv1_Contig3750:1..1185. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of DY270871 vs. ExPASy Swiss-Prot
Match: PURU_BACSU (Formyltetrahydrofolate deformylase OS=Bacillus subtilis GN=purU PE=3 SV=2)

HSP 1 Score: 67.0106 bits (162), Expect = 1.010e-17
Identity = 54/208 (25.96%), Postives = 87/208 (41.83%), Query Frame = 1 
Query:  157 CPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRRVFC*LAVIAMSRVQFLIGRAF*AMKKCVCECILLPNEFIFDPIKWPREQMDEDFFKLSKMFNAMRSVIRVPDIDPKYKVAVLASKPEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRLLERHGIPYHYLCAKXXXXXXXXXXXVQ-----NTDFLVLARYMQ 765
            CPD+ GIV+ +S  +   G NI+ ++ +  + +                        GR F            L  EF    I+  +  +   F  +++ F+   S+    ++    +VA+  SK  HCL + ++ WQ G L  EI  VISNH+         L+ER  IP+HY+ A            ++     + D +VLARYMQ
Sbjct:   26 CPDQPGIVSAVSAFLFEHGANIIESNQYTTDPEG-----------------------GRFF------------LRIEFDCAGIREKKSSLQAAFASVAEKFDMTWSLTLASELK---RVAIFVSKELHCLHELIWEWQTGNLMAEIAVVISNHEEAR-----ELVERLNIPFHYMKANKDIRAEVEKKQLELLEQYDVDVIVLARYMQ 190

HSP 2 Score: 45.0542 bits (105), Expect = 1.010e-17
Identity = 24/74 (32.43%), Postives = 36/74 (48.65%), Query Frame = 2 
Query:  839 LVNFI*ICQVNF*GVMERMLLTFHLGLLPPSKGGKPAKQALDGGVNLMGQQVLFGLKNLSPGPIIEQRVEKVSH 1060
            L  ++ I   +F       ++  H   LP   G  P K+A + GV L+G    +   +L  GPIIEQ +E+V H
Sbjct:  185 LARYMQILTPDFVSAHPNRIINIHHSFLPAFIGANPYKRAYERGVKLIGATSHYVTNDLDEGPIIEQDIERVDH 258
The following BLAST results are available for this feature:
BLAST of DY270871 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
PURU_BACSU1.010e-1725.96Formyltetrahydrofolate deformylase OS=Bacillus sub... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAP8YA03FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY270871 ID=DY270871; Name=DY270871; organism=Citrus clementina; type=EST; length=1185bp
AAAGAAAAGGAAATGACTCTGTTGCGAAGACTCTCTTCAAGCCTCCAACA
AGTTGTTAAATTTACAAACAGGTCCTTCAAGTCCCTGAAATTCCCCGGAG
AGCCCATCGAGTCCTCTGTCTCTTCCACTCTCACCCATGGAATCCACGTC
TTCCACTGCCCTGATGAAGTTGGGATTGTAGCTAAGCTCTCGGAATGTAT
TGCTTCAAGAGGTGGAAACATACTTGCAGCTGATGTTTTCGTGCCCGAGA
AAAAGAATGTCTTCTATTCCAGGAGGGTTTTCTGTTAACTTGCTGTCATT
GCAATGTCTAGGGTGCAATTCTTAATAGGACGGGCTTTTTGAGCAATGAA
AAAATGTGTATGTGAGTGCATTTTGCTGCCTAATGAGTTTATTTTTGATC
CCATTAAATGGCCACGGGAACAAATGGATGAAGACTTCTTTAAGCTGTCT
AAAATGTTCAATGCCATGAGATCTGTCATCCGAGTGCCTGACATTGACCC
CAAATATAAGGTTGCAGTTCTTGCTTCAAAGCCGGAACACTGCCTTGTTG
ATTTCTTATATGGATGGCAGGAAGGTAAACTTCCAGTTGAAATAACTTGT
GTGATAAGTAATCATGATAGAGGTCCAAACTCCCATGTGATTCGCTTGCT
TGAAAGGCACGGTATTCCTTATCATTATTTGTGTGCAAAAGAGAACGAAA
GAGAAGAAGAGCTTTTGGAATTGGTTCAGAATACTGATTTTCTAGTGCTA
GCTAGGTACATGCAGCCAGTTCCACTGCAGAAAGAGGCCTACCTTGGTTA
TAAATGGTTAGAGTCATTATCTAGTAGGGAATCCCTCACTAGTTAACTTC
ATATGAATATGTCAGGTAAATTTTTAAGGAGTTATGGAAAGGATGTTATT
AACATTTCACCTGGGTCTTTTGCCTCCCTCAAAGGGGGGAAAGCCAGCCA
AACAAGCTTTGGATGGAGGGGTTAATTTAATGGGGCAACAAGTTCTTTTT
GGACTGAAAAATTTGAGCCCGGGCCCTATTATTGAACAAAGGGTTGAAAA
AGTTTCCCACCAAAAACAATTTGGAAAATTTTTTTTCAAAAACCAAAAGA
TGTTGAAAAAAAAATGGTTCTCTGCAAAAGCCTAAAAAAAAAAAATTCGG
AAACGCGGGCGAGGTGGTTCCCTTTTTAAAAAAAA
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