DY270872

Overview
NameDY270872
Unique NameDY270872
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1256
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10285 contig Ccv1_Contig10285:44..1299. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY270872 vs. ExPASy Swiss-Prot
Match: GSTX4_TOBAC (Probable glutathione S-transferase OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 332.028 bits (850), Expect = 4.432e-90
Identity = 156/221 (70.59%), Postives = 180/221 (81.45%), Query Frame = 2
Query:   17 MANE-VVLLDFWPSMFGIRVRIALAEKGVKYEYKEEDLKNKSPLLLQMNPVHKKIPVLIHNGRPFCESPIIVQYIDEVWKDKAP-LLPSDPYQRAQARFWVDFIDKKMYDSLRKTWTTKGXXXXXXXXXXXXVLKTLEGQLGDKPFFGGDNFGYVDLSLIPFYCWFYTYETCGKFNVEAECPKFIAWVKRCLQRETVAKALPDGKKVFEFVSAMRTNLGLE 673
            MANE V+LLDFWPSMFG+R+RIALAEK +KYEYKEEDL+NKSPLLLQMNP+HKKIPVLIHNG+P CES I V+YI+EVWKDKAP LLPSDPY RAQARFW D+IDKK+YD  RK WTTKG             LK LEG LGDKP+FGG++FG+VD++LI +Y WFY YET G F+ EAECPKF+AW KRC+QRE+VAK+LPD  KV EFV  +R   GLE
Sbjct:    1 MANEEVILLDFWPSMFGMRLRIALAEKEIKYEYKEEDLRNKSPLLLQMNPIHKKIPVLIHNGKPICESIIAVEYIEEVWKDKAPNLLPSDPYDRAQARFWADYIDKKLYDFGRKLWTTKGEEQEAAKKDFIECLKVLEGALGDKPYFGGESFGFVDIALIGYYSWFYAYETFGNFSTEAECPKFVAWAKRCMQRESVAKSLPDQPKVLEFVKVLRQKFGLE 221          
BLAST of DY270872 vs. ExPASy Swiss-Prot
Match: GSTXC_TOBAC (Probable glutathione S-transferase parC OS=Nicotiana tabacum GN=PARC PE=2 SV=1)

HSP 1 Score: 328.946 bits (842), Expect = 3.752e-89
Identity = 154/221 (69.68%), Postives = 179/221 (81.00%), Query Frame = 2
Query:   17 MANE-VVLLDFWPSMFGIRVRIALAEKGVKYEYKEEDLKNKSPLLLQMNPVHKKIPVLIHNGRPFCESPIIVQYIDEVWKDKAP-LLPSDPYQRAQARFWVDFIDKKMYDSLRKTWTTKGXXXXXXXXXXXXVLKTLEGQLGDKPFFGGDNFGYVDLSLIPFYCWFYTYETCGKFNVEAECPKFIAWVKRCLQRETVAKALPDGKKVFEFVSAMRTNLGLE 673
            MANE V+LLDFWPSMFG+R+RIALAEK +KYEYK+EDL+NKSPLLLQMNP+HKKIPVLIHNG+P CES I V+YI+EVWKDKAP LLPSDPY RAQARFW D+IDKK+YD  RK W TKG             LK LEG LGD+P+FGG++FG+VD++LI FY WFY YET G F+ EAECPKF+AW KRC+QRE+VAK+LPD  KV EFV  +R   GLE
Sbjct:    1 MANEEVILLDFWPSMFGMRLRIALAEKEIKYEYKQEDLRNKSPLLLQMNPIHKKIPVLIHNGKPICESIIAVEYIEEVWKDKAPSLLPSDPYDRAQARFWADYIDKKLYDFGRKLWATKGEEQEAAKKDFIECLKVLEGALGDRPYFGGESFGFVDIALIGFYSWFYAYETFGNFSTEAECPKFVAWAKRCMQRESVAKSLPDQPKVLEFVKVLRQKFGLE 221          
BLAST of DY270872 vs. ExPASy Swiss-Prot
Match: GSTX3_SOYBN (Glutathione S-transferase 3 OS=Glycine max GN=GST3 PE=1 SV=1)

HSP 1 Score: 305.064 bits (780), Expect = 5.802e-82
Identity = 139/216 (64.35%), Postives = 169/216 (78.24%), Query Frame = 2
Query:   17 MANEVVLLDFWPSMFGIRVRIALAEKGVKYEYKEEDLKNKSPLLLQMNPVHKKIPVLIHNGRPFCESPIIVQYIDEVWKDKAPLLPSDPYQRAQARFWVDFIDKKMYDSLRKTWTTKGXXXXXXXXXXXXVLKTLEGQLGDKPFFGGDNFGYVDLSLIPFYCWFYTYETCGKFNVEAECPKFIAWVKRCLQRETVAKALPDGKKVFEFVSAMRTNL 664
            M++EVVLLD W SM+G+R RIALAEKGV+YEYKEE+L N+SPLLLQMNP+HKKIPVLIHNG+P CES IIVQYIDEVW DK+PL+PSDPY+R+QARFWVD+IDKK+YD+ +K W +KG            + K LE  L DKPF+G D FG+VDL LI F  WFYTYET G F +E ECPK +AWVKRC++RETV+  LPD KKV+  +  ++  L
Sbjct:    1 MSDEVVLLDTWASMYGMRARIALAEKGVRYEYKEENLMNRSPLLLQMNPIHKKIPVLIHNGKPICESAIIVQYIDEVWNDKSPLMPSDPYKRSQARFWVDYIDKKIYDTWKKMWLSKGEEHEEGKKELISIFKQLEETLTDKPFYGDDTFGFVDLCLITFSSWFYTYETYGNFKMEEECPKLMAWVKRCMERETVSNTLPDAKKVYGLIVELQKTL 216          
BLAST of DY270872 vs. ExPASy Swiss-Prot
Match: GSTXA_TOBAC (Probable glutathione S-transferase parA OS=Nicotiana tabacum GN=PARA PE=2 SV=1)

HSP 1 Score: 294.664 bits (753), Expect = 7.841e-79
Identity = 130/217 (59.91%), Postives = 169/217 (77.88%), Query Frame = 2
Query:   20 ANEVVLLDFWPSMFGIRVRIALAEKGVKYEYKEEDLKNKSPLLLQMNPVHKKIPVLIHNGRPFCESPIIVQYIDEVWKDKAPLLPSDPYQRAQARFWVDFIDKKMYDSLRKTWTTKGXXXXXXXXXXXXVLKTLEGQLGDKPFFGGDNFGYVDLSLIPFYCWFYTYETCGKFNVEAECPKFIAWVKRCLQRETVAKALPDGKKVFEFVSAMRTNLGL 670
            +N VVLLDFWPS FG+R+RIALA KG+KYE KEE+L +KSPLLL+MNPVHKKIP+LIHN +  CES  I++YIDEVW DK PLLPSDPY+R+QARFW D+IDKK+Y + R+ W+ KG            +LKTLEG+LG+K +FGGDN G+VD++L+PF  WFY+YETC  F++EAECPK + W K C++ E+V+K+LP   K++ FV  ++  LGL
Sbjct:    3 SNNVVLLDFWPSSFGMRLRIALALKGIKYEAKEENLSDKSPLLLEMNPVHKKIPILIHNSKAICESLNILEYIDEVWHDKCPLLPSDPYERSQARFWADYIDKKIYSTGRRVWSGKGEDQEEAKKEFIEILKTLEGELGNKTYFGGDNLGFVDVALVPFTSWFYSYETCANFSIEAECPKLVVWAKTCMESESVSKSLPHPHKIYGFVLELKHKLGL 219          
BLAST of DY270872 vs. ExPASy Swiss-Prot
Match: GSTX1_NICPL (Probable glutathione S-transferase MSR-1 OS=Nicotiana plumbaginifolia GN=MSR-1 PE=2 SV=1)

HSP 1 Score: 277.33 bits (708), Expect = 1.295e-73
Identity = 125/217 (57.60%), Postives = 166/217 (76.50%), Query Frame = 2
Query:   20 ANEVVLLDFWPSMFGIRVRIALAEKGVKYEYKEEDLKNKSPLLLQMNPVHKKIPVLIHNGRPFCESPIIVQYIDEVWKDKAPLLPSDPYQRAQARFWVDFIDKKMYDSLRKTWTTKGXXXXXXXXXXXXVLKTLEGQLGDKPFFGGDNFGYVDLSLIPFYCWFYTYETCGKFNVEAECPKFIAWVKRCLQRETVAKALPDGKKVFEFVSAMRTNLGL 670
            +N VVLLDF  S FG+R+RIALA KG+KYE KEE+L +KSPLLL+MNPVHKKIP+LIHNG+P CES  I++YIDEVW +K PLLPSDPYQR+QARFW ++ID K+Y + R+ W+ KG            + KTLEG+LG+K +FGGDN G+VD++L+PF  WFY+YETC  F++EAEC K + W + C++ E V+K+LP   K+++FV  ++  LGL
Sbjct:    3 SNNVVLLDFSGSSFGMRLRIALALKGIKYEAKEENLSDKSPLLLEMNPVHKKIPILIHNGKPICESLNILEYIDEVWHEKCPLLPSDPYQRSQARFWANYIDNKIYSTGRRVWSGKGEDQEEAKKEFIEIFKTLEGELGNKTYFGGDNLGFVDVALVPFTSWFYSYETCANFSIEAECRKLVVW-QNCMENERVSKSLPHPHKIYDFVLELKHKLGL 218          
BLAST of DY270872 vs. ExPASy Swiss-Prot
Match: GSTU1_ORYSJ (Probable glutathione S-transferase GSTU1 OS=Oryza sativa subsp. japonica GN=GSTU1 PE=1 SV=1)

HSP 1 Score: 227.254 bits (578), Expect = 1.537e-58
Identity = 109/226 (48.23%), Postives = 149/226 (65.93%), Query Frame = 2
Query:   26 EVVLLDFWPSMFGIRVRIALAEKGVKYEYKEEDLKNKSPLLLQMNPVHKKIPVLIHNGRPFCESPIIVQYIDEVWKDKAPLLP-------SDPYQRAQARFWVDFIDKKMYDSLRKTWTTKGXXXXXXXXXXXXVLKTLEGQLGDKPFF---GGDNFGYVDLSLIPFYCWFYTYETCGKFNVEAECPKFIAWVKRCLQRETVAKALPDGKKVFEFVSAMRTNLGLE 673
            E+VLLDFW S FG R RIA+AEKG+++EY+EEDL NKS LLL+ NPVH+KIPVL+H GRP  ES +I+QY+D+ +     LLP          Y RA ARFW D++D+K+YD   + W  KG            +L+TLE +LGD+ FF   GG   G+VD++L+PF  WFY+YE CG F+VE   P+  AW +RC + ++V K LP  +KV++FV  ++   G+E
Sbjct:    6 ELVLLDFWVSPFGQRCRIAMAEKGLEFEYREEDLGNKSDLLLRSNPVHRKIPVLLHAGRPVSESLVILQYLDDAFPGTPHLLPPANSGDADAAYARATARFWADYVDRKLYDCGSRLWRLKGEPQAAAGREMAEILRTLEAELGDREFFGGGGGGRLGFVDVALVPFTAWFYSYERCGGFSVEEVAPRLAAWARRCGRIDSVVKHLPSPEKVYDFVGVLKKKYGVE 231          
BLAST of DY270872 vs. ExPASy Swiss-Prot
Match: GSTU1_ORYSI (Probable glutathione S-transferase GSTU1 OS=Oryza sativa subsp. indica GN=GSTU1 PE=2 SV=1)

HSP 1 Score: 226.098 bits (575), Expect = 3.425e-58
Identity = 110/226 (48.67%), Postives = 152/226 (67.26%), Query Frame = 2
Query:   26 EVVLLDFWPSMFGIRVRIALAEKGVKYEYKEEDLKNKSPLLLQMNPVHKKIPVLIHNGRPFCESPIIVQYIDEVWKDKAPLL-PSD------PYQRAQARFWVDFIDKKMYDSLRKTWTTKGXXXXXXXXXXXXVLKTLEGQLGDKPFF---GGDNFGYVDLSLIPFYCWFYTYETCGKFNVEAECPKFIAWVKRCLQRETVAKALPDGKKVFEFVSAMRTNLGLE 673
            E+VLLDFW S FG R RIA+AEKG+++EY+EEDL NKS LLL+ NPVH+KIPVL+H GRP  ES +I+QY+D+ +     LL P++       Y RA ARFW D++D+K+YD   + W  KG            +L+TLE +LGD+ FF   GG   G+VD++L+PF  WFY+YE CG F+VE   P+  AW +RC + ++VAK LP  +KV++FV  ++   G+E
Sbjct:    6 ELVLLDFWVSPFGQRCRIAMAEKGLEFEYREEDLGNKSDLLLRSNPVHRKIPVLLHAGRPVSESLVILQYLDDAFPGTPHLLSPANSGDADAAYARATARFWADYVDRKLYDCGSRLWRLKGEPQAAAGREMAEILRTLEAELGDREFFGGGGGGRLGFVDVALVPFTAWFYSYERCGGFSVEEVAPRLAAWARRCGRIDSVAKHLPSPEKVYDFVGVLKKKYGVE 231          
BLAST of DY270872 vs. ExPASy Swiss-Prot
Match: GSTX2_TOBAC (Probable glutathione S-transferase OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 1.145e-37
Identity = 93/210 (44.29%), Postives = 121/210 (57.62%), Query Frame = 2
Query:   26 EVVLLDFWPSMFGIRVRIALAEKGVKYEYKEEDLKNKSPLLLQMNPVHKKIPVLIHNGRPFCESPIIVQYIDEVWKDKAPLLPSDPYQRAQARFWVDFIDKKMYDSLRKTWTTKGXXXXXXXXXXXXVLKTLEGQLGDKPFFGGDNFGYVDLSLIPFYCWFYTYET-CGKFNVEAE-CPKFIAWVKRCLQRETVAKALPDGKKVFEFVSA 649
            EV LL FW S F  RV  AL  KGVKYEY EED  NKS LLLQ NPV+KK+PVLIHNG+P  ES II++YIDE ++  + +LP DPY RA ARFW  F+D K+  ++  T+  KG            +LK L+ +L DK FF GD FG+ D++      W   +E   G   V++E  P F  W    +    V ++LP   ++  F  A
Sbjct:    3 EVKLLGFWYSPFSHRVEWALKIKGVKYEYIEEDRDNKSSLLLQSNPVYKKVPVLIHNGKPIVESMIILEYIDETFEGPS-ILPKDPYDRALARFWAKFLDDKV-AAVVNTFFRKGEEQEKGKEEVYEMLKVLDNELKDKKFFAGDKFGFADIAANLVGFWLGVFEEGYGDVLVKSEKFPNFSKWRDEYINCSQVNESLPPRDELLAFFRA 210          
BLAST of DY270872 vs. ExPASy Swiss-Prot
Match: GSTX1_TOBAC (Probable glutathione S-transferase OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 2.552e-37
Identity = 91/208 (43.75%), Postives = 122/208 (58.65%), Query Frame = 2
Query:   26 EVVLLDFWPSMFGIRVRIALAEKGVKYEYKEEDLKNKSPLLLQMNPVHKKIPVLIHNGRPFCESPIIVQYIDEVWKDKAPLLPSDPYQRAQARFWVDFIDKKMYDSLRKTWTTKGXXXXXXXXXXXXVLKTLEGQLGDKPFFGGDNFGYVDL--SLIPFYCWFYTYETCGKFNVEAE-CPKFIAWVKRCLQRETVAKALPDGKKVFEF 640
            EV LL FW S F  RV  AL  KGVKYEY EED  NKS LLLQ NP+HKK+PVLIHNG+   ES +I++YIDE ++  + +LP DPY RA ARFW  F+D K+  ++ KT+  KG            +LK L+ +L DK FF GD FG+ D+  +L+ F+   +  E  G   V +E  P F  W    +    + ++LP   ++  F
Sbjct:    3 EVKLLGFWYSPFSRRVEWALKIKGVKYEYIEEDRDNKSSLLLQSNPIHKKVPVLIHNGKRIVESMVILEYIDETFEGPS-ILPKDPYDRALARFWAKFLDDKV-PAVVKTFLRKGEEQEKDKEEVCEMLKVLDNELKDKKFFVGDKFGFADIAANLVAFWLGVFE-EASGVVLVTSEKFPNFCKWRGEYINCSQIKESLPPRDELLAF 207          
BLAST of DY270872 vs. ExPASy Swiss-Prot
Match: GSTX6_SOYBN (Probable glutathione S-transferase OS=Glycine max GN=HSP26-A PE=2 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 7.425e-37
Identity = 88/216 (40.74%), Postives = 122/216 (56.48%), Query Frame = 2
Query:   26 EVVLLDFWPSMFGIRVRIALAEKGVKYEYKEEDLKNKSPLLLQMNPVHKKIPVLIHNGRPFCESPIIVQYIDEVWKDKAPLLPSDPYQRAQARFWVDFIDKKMYDSLRKT-WTTKGXXXXXXXXXXXXVLKTLEGQLGDKPFFGGDNFGYVDLSLIPFYCWFYTYETCGKFNV--EAECPKFIAWVKRCLQRETVAKALPDGKKVFEFVSAMRTNL 664
            +V LL    S F  RV+IAL  KGV+Y++ EE+L NKS LLL+ NPVHKK+PV +HN +P  ES +IV+YIDE WK+  P+LPSDPYQRA ARFW  FID K+  ++ K+ +T                L+ LE +L DK FFGG+ FG VD++ +    W   ++      +    + P    W +  L    V + LP    +F +  A   +L
Sbjct:    7 DVKLLGIVGSPFVCRVQIALKLKGVEYKFLEENLGNKSDLLLKYNPVHKKVPVFVHNEQPIAESLVIVEYIDETWKNN-PILPSDPYQRALARFWSKFIDDKIVGAVSKSVFTVDEKEREKNVEETYEALQFLENELKDKKFFGGEEFGLVDIAAVFIAFWIPIFQEIAGLQLFTSEKFPILYKWSQEFLNHPFVHEVLPPRDPLFAYFKARYESL 221          
The following BLAST results are available for this feature:
BLAST of DY270872 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
GSTX4_TOBAC4.432e-9070.59Probable glutathione S-transferase OS=Nicotiana ta... [more]
GSTXC_TOBAC3.752e-8969.68Probable glutathione S-transferase parC OS=Nicotia... [more]
GSTX3_SOYBN5.802e-8264.35Glutathione S-transferase 3 OS=Glycine max GN=GST3... [more]
GSTXA_TOBAC7.841e-7959.91Probable glutathione S-transferase parA OS=Nicotia... [more]
GSTX1_NICPL1.295e-7357.60Probable glutathione S-transferase MSR-1 OS=Nicoti... [more]
GSTU1_ORYSJ1.537e-5848.23Probable glutathione S-transferase GSTU1 OS=Oryza ... [more]
GSTU1_ORYSI3.425e-5848.67Probable glutathione S-transferase GSTU1 OS=Oryza ... [more]
GSTX2_TOBAC1.145e-3744.29Probable glutathione S-transferase OS=Nicotiana ta... [more]
GSTX1_TOBAC2.552e-3743.75Probable glutathione S-transferase OS=Nicotiana ta... [more]
GSTX6_SOYBN7.425e-3740.74Probable glutathione S-transferase OS=Glycine max ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAP8YA05FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY270872 ID=DY270872; Name=DY270872; organism=Citrus clementina; type=EST; length=1256bp
GTAAGCTTCTGTCACTATGGCGAACGAAGTGGTTCTGTTGGATTTCTGGC
CCAGCATGTTTGGGATAAGGGTCAGGATTGCTCTGGCGGAGAAAGGCGTC
AAGTATGAGTACAAGGAAGAGGACTTGAAGAACAAGAGCCCCCTGCTTCT
GCAGATGAACCCCGTTCACAAGAAGATCCCGGTTCTCATCCACAACGGCA
GACCGTTCTGTGAGTCACCCATCATTGTTCAGTACATTGATGAAGTGTGG
AAGGACAAGGCTCCATTGCTTCCCTCTGATCCCTACCAGAGAGCTCAAGC
TAGGTTCTGGGTAGATTTCATTGACAAGAAGATGTACGATTCTTTGAGGA
AGACATGGACCACAAAGGGAGAAGAGCAGGAGGCAGCTAAGAAGGAGTTC
TTTGAAGTTCTGAAGACTTTGGAAGGGCAGCTTGGAGACAAGCCTTTCTT
CGGAGGAGACAATTTTGGGTATGTGGATTTAAGTTTGATCCCATTCTATT
GTTGGTTTTACACGTATGAGACATGTGGAAAGTTCAACGTCGAGGCTGAG
TGCCCCAAGTTCATAGCTTGGGTGAAGAGATGCTTGCAGAGGGAGACTGT
TGCCAAGGCACTTCCTGATGGGAAGAAAGTGTTTGAATTTGTTTCAGCGA
TGAGGACAAATTTAGGATTGGAGTAGAGAGAAAAAGGGACATACCTTGGA
GCTGAGAATAAGTCAAGCAGCGCAATCGTGCTGCCTGCTTATTCTTTAGG
TGGTTGATGTTGGTTTGGCTTGTGATGGTTGTTTTCCTATTGTGTTTTTG
TATTCGGAATGTTGTATTTCCCTAGTAAAATTAACCTCCCATAAATCCAA
TAAAGACAATTTATTTTGTCCCCTACTGTTGTTATCTTAATGTATGGTAA
TCACCAAAAATGGTGTTAGTATATTGAAATTGTAATTTTTATTGGTATAT
TTTTAAAAAATTGTATTAAATTAAGGTGGAATAAAAAAAAAAAAAAAAAA
AAAACCCAACTTTCCTGTAAAAAGGTTTGCCTTTAAAGAAAAAGCTTTTC
CTTATCAATTTTTTTGCACCCAACACGGTTCCCTATCCAGTCTAAAAATA
AAAATTTATTTTTTTCTCCCTCCCCACCGGAAAAAACCCCCCACAATGAA
TGGGGGCCCAATTAAATTTCAGGGGCGCCAATAGGCGGTGTTTTTCTCCC
GGGGGCGGCAGAGTCCCCTGGGCGCCCCGGCCGGTGGGTCCCCACTCAAA
AAAAAT
back to top