DY270874

Overview
NameDY270874
Unique NameDY270874
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1262
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY270874_ssr1175 microsatellite DY270874_ssr1175:1175..1186. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig3752 contig Ccv1_Contig3752:1..1262. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY270874 vs. ExPASy Swiss-Prot
Match: RL7_BRASB (50S ribosomal protein L7/L12 OS=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) GN=rplL PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 1.791e-14
Identity = 49/133 (36.84%), Postives = 74/133 (55.64%), Query Frame = 2
Query:  155 IVDEISCLSLVEVMDLADVVRNKLGIKEMPNMCVMMPGMGFSXXXXXXXXXXXXXXXXXXXXXXXFDLKLEGYGAEAKLKVIKEVRGFTGLGLKESKELVEKVPTLLKRGVTKDEADKIVAKLKEVGAQVSME 553
            IVD++S L+++E  +LA ++  K G+     + V  PG G +                       F + L   G + K++VIKEVR  TGLGLKE+K+LVE  P  +K GV KDEA+KI  +L++ GA+V ++
Sbjct:    7 IVDDLSALTVLEAAELAKLLEEKWGVSAAAAVAVAAPGAGGAAAAPAEEKTE-------------FTVVLASAG-DKKIEVIKEVRAITGLGLKEAKDLVEGAPKPVKEGVNKDEAEKIKGQLEKAGAKVELK 125          
BLAST of DY270874 vs. ExPASy Swiss-Prot
Match: RL7_RHOPB (50S ribosomal protein L7/L12 OS=Rhodopseudomonas palustris (strain BisB18) GN=rplL PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 3.991e-14
Identity = 50/133 (37.59%), Postives = 73/133 (54.89%), Query Frame = 2
Query:  155 IVDEISCLSLVEVMDLADVVRNKLGIKEMPNMCVMMPGMGFSXXXXXXXXXXXXXXXXXXXXXXXFDLKLEGYGAEAKLKVIKEVRGFTGLGLKESKELVEKVPTLLKRGVTKDEADKIVAKLKEVGAQVSME 553
            IVD++S L+++E  +LA ++  K G+     + V  P    +                       F + L   G E K++VIKEVR  TGLGLKE+K+LVE  P  +K GV KDEADKI A+L++ GA+V ++
Sbjct:    7 IVDDLSSLTVLEAAELAKLLEEKWGVSAAAAVAVAGPAAAAAAPAEEKTE---------------FTVVLAAAG-EKKIEVIKEVRAITGLGLKEAKDLVEGAPKPVKEGVNKDEADKIKAQLEKAGAKVELK 123          
BLAST of DY270874 vs. ExPASy Swiss-Prot
Match: RL7_OCHA4 (50S ribosomal protein L7/L12 OS=Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) GN=rplL PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 6.808e-14
Identity = 49/136 (36.03%), Postives = 73/136 (53.68%), Query Frame = 2
Query:  146 VASIVDEISCLSLVEVMDLADVVRNKLGIKEMPNMCVMMPGMGFSXXXXXXXXXXXXXXXXXXXXXXXFDLKLEGYGAEAKLKVIKEVRGFTGLGLKESKELVEKVPTLLKRGVTKDEADKIVAKLKEVGAQVSME 553
            +A IVD++S L+++E  +L+ ++  K G+     + V   G                           FD+ L   GA  K+ VIKEVR  TGLGLKE+K+LVE  P  +K G +KDEA+KI A+L+  GA+V ++
Sbjct:    4 LAKIVDDLSALTVLEAAELSKLLEEKWGVSAAAPVAVAAAG--------------GAAPAAAAEEKTEFDVVLADGGAN-KINVIKEVRAITGLGLKEAKDLVEGAPKAVKEGASKDEAEKIKAQLEAAGAKVELK 124          
BLAST of DY270874 vs. ExPASy Swiss-Prot
Match: RL7_CHLPD (50S ribosomal protein L7/L12 OS=Chlorobium phaeobacteroides (strain DSM 266) GN=rplL PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 6.808e-14
Identity = 48/136 (35.29%), Postives = 72/136 (52.94%), Query Frame = 2
Query:  146 VASIVDEISCLSLVEVMDLADVVRNKLGIKEMPNMCVMMPGMGFSXXXXXXXXXXXXXXXXXXXXXXXFDLKLEGYGAEAKLKVIKEVRGFTGLGLKESKELVEKVPTLLKRGVTKDEADKIVAKLKEVGAQVSME 553
            + ++V+EI  L+L E  +L   +  K G+   P    MM G+                          FD+ L   G E+K+ VIK VR  TGLGLKE+K+LV+  P  +K G++KDEA+K+  +LK+VGA V ++
Sbjct:    3 IETLVEEIGKLTLTEASELVKALEEKFGVSAAP---AMMAGV---------MAAAPAGDAPAQEEKTEFDVVLTAAG-ESKINVIKVVRALTGLGLKEAKDLVDGAPKTVKEGISKDEAEKVAKELKDVGASVELK 125          
BLAST of DY270874 vs. ExPASy Swiss-Prot
Match: RL7_BRUO2 (50S ribosomal protein L7/L12 OS=Brucella ovis (strain ATCC 25840 / 63/290 / NCTC 10512) GN=rplL PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 6.808e-14
Identity = 49/136 (36.03%), Postives = 74/136 (54.41%), Query Frame = 2
Query:  146 VASIVDEISCLSLVEVMDLADVVRNKLGIKEMPNMCVMMPGMGFSXXXXXXXXXXXXXXXXXXXXXXXFDLKLEGYGAEAKLKVIKEVRGFTGLGLKESKELVEKVPTLLKRGVTKDEADKIVAKLKEVGAQVSME 553
            +A IV+++S L+++E  +L+ ++  K G+     + V   G                           FD+ L   GA  K+ VIKEVR  TGLGLKE+K+LVE  P  +K GV+KDEA+KI A+L+  GA+V ++
Sbjct:    4 LAKIVEDLSALTVLEAAELSKLLEEKWGVSAAAPVAVAAAG--------------GAAPAAAAEEKTEFDVVLADGGAN-KINVIKEVRALTGLGLKEAKDLVEGAPKAVKEGVSKDEAEKIKAQLEAAGAKVELK 124          
BLAST of DY270874 vs. ExPASy Swiss-Prot
Match: RL7_THEM4 (50S ribosomal protein L7/L12 OS=Thermosipho melanesiensis (strain BI429 / DSM 12029) GN=rplL PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 8.891e-14
Identity = 52/142 (36.62%), Postives = 80/142 (56.34%), Query Frame = 2
Query:  140 EKVASIVDEISCLSLVEVMDLADVVRNKLGIK-EMPNMCVMMPGMGFSXXXXXXXXXXXXXXXXXXXXXXXFDLKLEGYGAEAKLKVIKEVRGFTGLGLKESKELVEKVPT---LLKRGVTKDEADKIVAKLKEVGAQVSME 553
            EK+  IV+EI  L++ E+ +L  ++ +K G+    P M + + G                           FD+ L+ +GA+ K+ VIK VR  TGLGLKE+K+LVEK  T   ++K+GV KDEA++I  KL+E GA+V ++
Sbjct:    2 EKLEQIVNEIEQLTVAELAELVKMLEDKFGVSASAPVMAMPVAGAAAGGGAAAEEKTE-------------FDVVLKSFGAK-KINVIKVVREITGLGLKEAKDLVEKAGTPDAVIKQGVNKDEAEEIKKKLEEAGAEVELK 129          
BLAST of DY270874 vs. ExPASy Swiss-Prot
Match: RL7_PROA2 (50S ribosomal protein L7/L12 OS=Prosthecochloris aestuarii (strain DSM 271 / SK 413) GN=rplL PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.161e-13
Identity = 48/136 (35.29%), Postives = 74/136 (54.41%), Query Frame = 2
Query:  146 VASIVDEISCLSLVEVMDLADVVRNKLGIKEMPNMCVMMPGMGFSXXXXXXXXXXXXXXXXXXXXXXXFDLKLEGYGAEAKLKVIKEVRGFTGLGLKESKELVEKVPTLLKRGVTKDEADKIVAKLKEVGAQVSME 553
            + ++V+EI  LSL E  +L   +  K G+   P   V+  GM  +                       FD++L+  GA  K+ VIK VR  TGLGLKE+KE+V+  P ++K  V+K+EA+KI  +LK+ GA+V ++
Sbjct:    4 IETLVEEIGKLSLTEASELVKALEEKFGVSAAP--AVIAGGMAAAPAGDAAAQEEKTE----------FDVELKAAGAN-KINVIKVVRSITGLGLKEAKEVVDGAPKVVKEAVSKEEAEKIAKELKDAGAEVELK 126          
BLAST of DY270874 vs. ExPASy Swiss-Prot
Match: RL7_MESSB (50S ribosomal protein L7/L12 OS=Mesorhizobium sp. (strain BNC1) GN=rplL PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.161e-13
Identity = 49/136 (36.03%), Postives = 75/136 (55.15%), Query Frame = 2
Query:  146 VASIVDEISCLSLVEVMDLADVVRNKLGIKEMPNMCVMMPGMGFSXXXXXXXXXXXXXXXXXXXXXXXFDLKLEGYGAEAKLKVIKEVRGFTGLGLKESKELVEKVPTLLKRGVTKDEADKIVAKLKEVGAQVSME 553
            +A IV+++S L+++E  +L+ ++  K G+     + V   G   +                       FD+ L   GA+ K+ VIKEVR  TGLGLKE+K+LVE  P  +K GV KDEA+KI A+L+  GA+V ++
Sbjct:    4 LAKIVEDLSSLTVLEAAELSKMLEEKWGVSAAAPVAVAAAGGAAAPAAAAEEKTE-------------FDVVLADAGAQ-KINVIKEVRAITGLGLKEAKDLVEGAPKPVKEGVAKDEAEKIKAQLEGAGAKVELK 125          
BLAST of DY270874 vs. ExPASy Swiss-Prot
Match: RL7_MAGSA (50S ribosomal protein L7/L12 OS=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) GN=rplL PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.161e-13
Identity = 49/136 (36.03%), Postives = 74/136 (54.41%), Query Frame = 2
Query:  146 VASIVDEISCLSLVEVMDLADVVRNKLGIKEMPNMCVMMPGMGFSXXXXXXXXXXXXXXXXXXXXXXXFDLKLEGYGAEAKLKVIKEVRGFTGLGLKESKELVEKVPTLLKRGVTKDEADKIVAKLKEVGAQVSME 553
            +A +VD++S L+++E  +L+ ++  K G+     + V     G +                       FD+ L   G E K+ VIKEVR  TGLGLKE+K+LVE  P  +K GV+KDEA+KI   L+E GA+V ++
Sbjct:    4 LAKLVDDLSALTVLEAAELSKLLEEKWGVSAAAPVAVAAVAAGAAAPAAEEQTE--------------FDVILTDAG-EKKINVIKEVRAITGLGLKEAKDLVEAAPKSVKDGVSKDEAEKIKKVLEEAGAKVQVK 124          
BLAST of DY270874 vs. ExPASy Swiss-Prot
Match: RL7_LYSSC (50S ribosomal protein L7/L12 OS=Lysinibacillus sphaericus (strain C3-41) GN=rplL PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.161e-13
Identity = 48/133 (36.09%), Postives = 72/133 (54.14%), Query Frame = 2
Query:  155 IVDEISCLSLVEVMDLADVVRNKLGIKEMPNMCVMMPGMGFSXXXXXXXXXXXXXXXXXXXXXXXFDLKLEGYGAEAKLKVIKEVRGFTGLGLKESKELVEKVPTLLKRGVTKDEADKIVAKLKEVGAQVSME 553
            I++ I  ++++E+ DL   +  + G+     + V+  G   +                       FD+ L   GAE K+KVIK VR  TGLGLKE+KE+V+  P  LK GV+KDEA++I  KL+EVGA V ++
Sbjct:    6 ILEAIKAMTVLELNDLVKAIEEEFGVTAAAPVAVVAGGAAAAEEKTE------------------FDVVLASAGAE-KIKVIKVVREITGLGLKEAKEVVDNAPKALKEGVSKDEAEEIKTKLEEVGASVEVK 119          
The following BLAST results are available for this feature:
BLAST of DY270874 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 244
Match NameE-valueIdentityDescription
RL7_BRASB1.791e-1436.8450S ribosomal protein L7/L12 OS=Bradyrhizobium sp.... [more]
RL7_RHOPB3.991e-1437.5950S ribosomal protein L7/L12 OS=Rhodopseudomonas p... [more]
RL7_OCHA46.808e-1436.0350S ribosomal protein L7/L12 OS=Ochrobactrum anthr... [more]
RL7_CHLPD6.808e-1435.2950S ribosomal protein L7/L12 OS=Chlorobium phaeoba... [more]
RL7_BRUO26.808e-1436.0350S ribosomal protein L7/L12 OS=Brucella ovis (str... [more]
RL7_THEM48.891e-1436.6250S ribosomal protein L7/L12 OS=Thermosipho melane... [more]
RL7_PROA21.161e-1335.2950S ribosomal protein L7/L12 OS=Prosthecochloris a... [more]
RL7_MESSB1.161e-1336.0350S ribosomal protein L7/L12 OS=Mesorhizobium sp. ... [more]
RL7_MAGSA1.161e-1336.0350S ribosomal protein L7/L12 OS=Magnetospirillum m... [more]
RL7_LYSSC1.161e-1336.0950S ribosomal protein L7/L12 OS=Lysinibacillus sph... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP8YA07FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY270874 ID=DY270874; Name=DY270874; organism=Citrus clementina; type=EST; length=1262bp
GAGACATTTACGGTTCATTACCCTACACGTGTCCCGAAATTTCAAATCCT
CCCTTCAAAACCCTAGAAGTGCCACGAACAGTCATCTCCTTAATCGAATT
TCGGCACGTGATTATTGCACTCCTTCACAAGAACCGTCGGAGAAGGTTGC
CTCAATCGTCGACGAAATATCATGCCTCAGTCTGGTCGAAGTTATGGACC
TGGCCGATGTCGTGCGGAACAAATTGGGAATTAAGGAAATGCCGAACATG
TGCGTAATGATGCCCGGAATGGGGTTTTCCGTGAAGGGCGCCACCGCGAG
AGGAGGAACTGGGACCGGAAAGGCAGAGGAGAAAGTAGAGAAGACGGTGT
TCGATTTGAAGCTGGAAGGGTATGGTGCTGAGGCGAAGCTTAAGGTGATT
AAGGAAGTTAGAGGGTTTACGGGTTTGGGGCTGAAAGAGTCTAAAGAGTT
GGTAGAGAAAGTTCCCACTTTGTTGAAAAGGGGCGTTACCAAAGACGAGG
CTGACAAAATTGTTGCTAAACTGAAGGAAGTTGGCGCTCAAGTCTCCATG
GAGTGAGCTTGAGTTCATCAGAGGAGTGAATGATGAAGATCTTGAAGTCA
AGACTCTGGAGCTATGGCTGGTTAATATCAAAAGTATCCGATTCCGATCT
ATATCATTCTTCGACTATCTGTGAGGGTGATAAACGCATGTCTTTCATAA
TACACAACATTCATTGATAAAGCTAATTTGTTATGTTCCCAGATAGAATC
ATTTTAGGCCAACTTTTCTCTTTTTTTTTTGCCTTAATTTTTATTCTTAA
AATTTCATACAACTTCTGTGGAACTGGATTCTGATGACGGTTTCAGTTTA
TAAAAAATCTTTTGGAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCC
ACTTTCCTTGGACAAGTTTGGCATTTAAAAAAAGCTTGCTTAATAATTTT
TTTGAAAGAAAAGGGTCCAATACGTTAAAAAAAAAATATAATTGGCCTCC
CCCCGGAAATTCCCTAATTAGGGGAGTCAAAATAAAGGGGGCAATAAGGG
TTTCCGGGGGCACCCCGGGGCCCCGGGTTCCAAAAAACTCCTGGAAGTGT
TAATTGGGGAAAAAAAAAAAAAAATAATTTCACCTCGGTTGTTAAAAAAA
AAAACCCCCCCCCGGGCCATACAAAAAGAAAGAAAGTGCCCCTATTTTTT
TTTTTTCTTTAATCTCGGGGGGAAATATTATAAAAAAATAAACCTCCAAA
ATTTTTTTTTTT
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