DY270887

Overview
NameDY270887
Unique NameDY270887
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1214
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY270887_ssr36 microsatellite DY270887_ssr36:36..55. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig3758 contig Ccv1_Contig3758:1..1214. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY270887 vs. ExPASy Swiss-Prot
Match: COX10_MOUSE (Protoheme IX farnesyltransferase, mitochondrial OS=Mus musculus GN=Cox10 PE=2 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 1.063e-40
Identity = 86/180 (47.78%), Postives = 113/180 (62.78%), Query Frame = 1
Query:  346 LSKARLSMLVVATSGTGFALGSGSTIDLAGLCWTCTGTMMVAASANSLNQLFEISNDAKMKRTMRRPLPSGRISVRHAVTWASSVGVAGTALLAWKANMLTAGLAASNLILYAFVYTPLKQIHPVNTWVGAIVGAIPPLLGWTAAVGHVSLNGMILPATLYFWQKPHFMALAYLCRNDYA 885
            LSK +L+ LVV+T+  GFAL  G   D +    T  GT + + +ANS+NQ FE+  D+ M RT  RPL  G+IS   AV++A+   V G ALL W  N LT  L   N+ LY   YTPLK++   NTWVGA+VGAIPP++GWTAA G +    ++L   LY WQ PHF AL++  R DY+
Sbjct:  159 LSKIKLTALVVSTTSAGFALAPGP-FDWSCFLLTSLGTGLASCAANSINQFFEVPFDSNMNRTKNRPLVRGQISPLLAVSFATCCAVPGVALLTWGVNPLTGALGVFNIFLYTCCYTPLKRVSITNTWVGAVVGAIPPVMGWTAATGSLDAGALLLGGILYSWQFPHFNALSWGLREDYS 337          
BLAST of DY270887 vs. ExPASy Swiss-Prot
Match: COX10_HUMAN (Protoheme IX farnesyltransferase, mitochondrial OS=Homo sapiens GN=COX10 PE=1 SV=2)

HSP 1 Score: 161.77 bits (408), Expect = 7.619e-39
Identity = 85/181 (46.96%), Postives = 111/181 (61.33%), Query Frame = 1
Query:  343 ELSKARLSMLVVATSGTGFALGSGSTIDLAGLCWTCTGTMMVAASANSLNQLFEISNDAKMKRTMRRPLPSGRISVRHAVTWASSVGVAGTALLAWKANMLTAGLAASNLILYAFVYTPLKQIHPVNTWVGAIVGAIPPLLGWTAAVGHVSLNGMILPATLYFWQKPHFMALAYLCRNDYA 885
            +LSK +L+ LVV+T+  GFAL  G   D      T  GT + + +ANS+NQ FE+  D+ M RT  RPL  G+IS   AV++A+   V G A+L    N LT  L   N+ LY   YTPLK+I   NTWVGA+VGAIPP++GWTAA G +     +L   LY WQ PHF AL++  R DY+
Sbjct:  159 QLSKIKLTALVVSTTAAGFALAPGP-FDWPCFLLTSVGTGLASCAANSINQFFEVPFDSNMNRTKNRPLVRGQISPLLAVSFATCCAVPGVAILTLGVNPLTGALGLFNIFLYTCCYTPLKRISIANTWVGAVVGAIPPVMGWTAATGSLDAGAFLLGGILYSWQFPHFNALSWGLREDYS 338          
BLAST of DY270887 vs. ExPASy Swiss-Prot
Match: COX10_PONAB (Protoheme IX farnesyltransferase, mitochondrial OS=Pongo abelii GN=COX10 PE=2 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 8.424e-38
Identity = 84/180 (46.67%), Postives = 109/180 (60.56%), Query Frame = 1
Query:  346 LSKARLSMLVVATSGTGFALGSGSTIDLAGLCWTCTGTMMVAASANSLNQLFEISNDAKMKRTMRRPLPSGRISVRHAVTWASSVGVAGTALLAWKANMLTAGLAASNLILYAFVYTPLKQIHPVNTWVGAIVGAIPPLLGWTAAVGHVSLNGMILPATLYFWQKPHFMALAYLCRNDYA 885
            LSK +L+ LVV+T+  GFAL  G   D      T  GT + + +ANS+NQ FE+  D+ M RT  RPL  G+IS   AV++A+   V G A+L    N LT  L   N+ LY   YTPLK+I   NTWVGA+VGAIPP++GWTAA G +     +L   LY WQ PHF AL++  R  Y+
Sbjct:  160 LSKIKLTALVVSTTAAGFALAPGP-FDWPCFLLTSVGTGLASCAANSINQFFEVPFDSNMNRTKNRPLVRGQISPLLAVSFATCCAVPGVAILTLGVNPLTGALGLFNIFLYTCCYTPLKRISIANTWVGAVVGAIPPVMGWTAATGSLDAGAFLLGGILYSWQFPHFNALSWGLREGYS 338          
BLAST of DY270887 vs. ExPASy Swiss-Prot
Match: COX10_ASPFU (Protoheme IX farnesyltransferase, mitochondrial OS=Aspergillus fumigatus GN=cox10 PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 1.030e-35
Identity = 94/227 (41.41%), Postives = 121/227 (53.30%), Query Frame = 1
Query:  304 PFSLIRHYGRCYWELSKARLSMLVVATSGTGFA----------------LGSGSTIDLAGLCWTCTGTMMVAASANSLNQLFEISNDAKMKRTMRRPLPSGRISVRHAVTWASSVGVAGTALLAWKANMLTAGLAASNLILYAFVYTPLKQIHPVNTWVGAIVGAIPPLLGWTAAVGHV----------------SLNGMILPATLYFWQKPHFMALAYLCRNDYAA 888
            P + +R     +  L+K RLS L+V T+ + +                 L + ST  L  L  T TGT + + SAN+LN L E   DA M RT  RPL  G +S R AV +A +   AG  LL    N  T  L+ASN+ LYAFVYTPLK+I  +NTWVGA+VG IPPL+GWTAA G                  S+ G +L   L+ WQ PHF AL+Y+ R +Y A
Sbjct:  150 PATSLRRKLAAFLALTKPRLSFLIVLTTTSAYGMYPISSLLTLDPSMTPLPTLSTSTLTFLYLT-TGTFLSSCSANTLNMLLEPKYDALMSRTRNRPLVRGLLSRRAAVLFAIATAAAGLGLLYIGTNPTTTALSASNICLYAFVYTPLKRISVINTWVGAVVGGIPPLMGWTAAAGQTATTGHDSWRDMLFSKDSIGGWLLGGILFAWQFPHFNALSYMIREEYKA 375          
BLAST of DY270887 vs. ExPASy Swiss-Prot
Match: COX10_EMENI (Protoheme IX farnesyltransferase, mitochondrial OS=Emericella nidulans GN=cox10 PE=3 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 1.942e-34
Identity = 84/224 (37.50%), Postives = 120/224 (53.57%), Query Frame = 1
Query:  304 PFSLIRHYGRCYWELSKARLSMLVVATSGTGFALGSGSTI---------------DLAGLCWTCTGTMMVAASANSLNQLFEISNDAKMKRTMRRPLPSGRISVRHAVTWASSVGVAGTALLAWKANMLTAGLAASNLILYAFVYTPLKQIHPVNTWVGAIVGAIPPLLGWTAAV----------------GHVSLNGMILPATLYFWQKPHFMALAYLCRNDY 882
            P + +R     ++ L+K RLS LV+ ++ + + +   S+I                     +  TGT + A SAN+LN +FE   DA+M RT  RPL  G ++ R AV +A +    G  LL +  N    GL+A+N+ LYAFVYTPLK++H +NTW+GAIVG IPP++GW AA                 G  SL G +L   L+ WQ PHF AL++  R +Y
Sbjct:  142 PKTSLRRKLAAFFALTKPRLSFLVLLSTTSAYGIYPVSSILALDPTIAPLPTLSTSTLTFLYLTTGTFLSACSANTLNMIFEPKYDAQMSRTRNRPLVRGLVTRRAAVFFAIATAAVGLGLLYFGTNPTVTGLSAANIALYAFVYTPLKRMHVINTWIGAIVGGIPPMMGWVAAAGQGATTGHDTWRDMLFGENSLGGWLLGGILFAWQFPHFNALSHTIREEY 365          
BLAST of DY270887 vs. ExPASy Swiss-Prot
Match: COXX_ACIBL (Protoheme IX farnesyltransferase OS=Acidobacteria bacterium (strain Ellin345) GN=ctaB PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 4.327e-34
Identity = 77/189 (40.74%), Postives = 115/189 (60.85%), Query Frame = 1
Query:  331 RCYWELSKARLSMLVVATSGTGFALGSGSTIDLAGLCWTC----TGTMMVAASANSLNQLFEISNDAKMKRTMRRPLPSGRISVRHAVTWASSVGVAGTALLAWKANMLTAGLAASNLILYAFVYTPLKQIHPVNTWVGAIVGAIPPLLGWTAAVGHVSLNGMILPATLYFWQKPHFMALAYLCRNDYA 885
            R Y EL+KAR++ L+V T+ TG   G+  +  L  + WT      G  +V+    ++N++ E  +DA+M+RT  RPL +G +S+ H +  +  + + G   L    N LTA LA    ++Y   YTPLK+IHP+ T +GA  GA+PP+LGWTA  GH+    + L A L+FWQ PHF ++A+L R+DYA
Sbjct:   20 RDYSELTKARVTTLIVMTAWTGAFFGAAKS-GLPLVSWTLFHALLGIGLVSGGTAAMNEVIERESDARMRRTAIRPLVTGSMSLGHGMVVSLVMMIGGAGYLGLMTNWLTAALALMTSVVYLMAYTPLKKIHPICTTIGAFPGAMPPVLGWTAIRGHLGWEAVALFAILFFWQFPHFHSIAWLYRDDYA 207          
BLAST of DY270887 vs. ExPASy Swiss-Prot
Match: COX10_GIBZE (Protoheme IX farnesyltransferase, mitochondrial OS=Gibberella zeae GN=COX10 PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 4.327e-34
Identity = 89/218 (40.83%), Postives = 117/218 (53.67%), Query Frame = 1
Query:  313 LIRHYGRCYWELSKARLSMLVVATSGTGFALG------SGSTIDLAGLC-----WTCTGTMMVAASANSLNQLFEISNDAKMKRTMRRPLPSGRISVRHAVTWASSVGVAGTALLAWKANMLTAGLAASNLILYAFVYTPLKQIHPVNTWVGAIVGAIPPLLGWTAAVGHV-----------------SLNGMILPATLYFWQKPHFMALAYLCRNDY 882
            L RH   C   L+K RL+MLVV T+   +AL       S ST +   L      +   GT   +ASAN+LN L+E S DAKM RT  RPL    IS R AV +A   G  GT  L +  N   +GL  +N+++YA +YTPLK +   NTW+GA+VG IPPL+GW AA G                   S+ G ++   L+ WQ PHFMAL++  R +Y
Sbjct:  151 LRRHLSACL-SLAKPRLTMLVVLTAMATYALYPVPEMLSPSTTETPSLSPLTLLFLTIGTTFCSASANALNMLYEPSTDAKMTRTRNRPLVRNLISKRAAVLFAILSGFVGTGALYFGVNPTVSGLGFANIVIYAGMYTPLKAVTAFNTWIGAVVGGIPPLMGWAAAAGETATKDGSWRELLFASDGSSIGGWVMAGLLFAWQFPHFMALSWPIREEY 367          
BLAST of DY270887 vs. ExPASy Swiss-Prot
Match: COX10_SCHPO (Protoheme IX farnesyltransferase, mitochondrial OS=Schizosaccharomyces pombe GN=cox10 PE=2 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 3.663e-33
Identity = 76/185 (41.08%), Postives = 111/185 (60.00%), Query Frame = 1
Query:  337 YWELSKARLSMLVVATSGTGFALGSGSTIDLAGLCWTCTGTMMVAASANSLNQLFEISNDAKMKRTMRRPLPSGRISVRHAVTWASSVGVAGTALLAWKANMLTAGLAASNLILYAFVYTPLKQIHPVNTWVGAIVGAIPPLLGWTAAVGHVSLN---GMILPATLYFWQKPHFMALAYLCRNDY 882
            + EL K RL++LVV ++ + +AL     +    L W   GT + + SAN+ NQ  E   D +M RT  RP+P G I   +A  +A+  G+AGT+ +++  N     L   N++LY  +YTPLK+I  VNTWVG++VGAIPPL+GW A  G   L+   G+I  A L+ WQ PHF A + + ++DY
Sbjct:   87 FLELGKPRLTVLVVLSTMSSYALAPYPGLSFNTLAWLTMGTALCSISANAFNQSMEPMLDCQMARTRSRPIPRGAIRPEYAWLFATLTGIAGTS-MSFLVNPTVGWLGLGNIVLYMGIYTPLKRISIVNTWVGSLVGAIPPLMGWAACSGGDLLSHPGGLITAAMLFAWQFPHFNAFSTMVKDDY 270          
BLAST of DY270887 vs. ExPASy Swiss-Prot
Match: COXX_SYNP6 (Protoheme IX farnesyltransferase OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=ctaB PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 1.066e-32
Identity = 77/188 (40.96%), Postives = 109/188 (57.98%), Query Frame = 1
Query:  337 YWELSKARLSMLVVATSGTGFALGSGSTIDLAGLCWTCTGTMMVAASANSLNQLFEISNDAKMKRTMRRPLPSGRISVRHAVTWASSVGVAGTALLAWKANMLTAGLAASNLILYAFVYT-PLKQIHPVNTWVGAIVGAIPPLLGWTAAVGHVSLNGMILPATLYFWQKPHFMALAYLCRNDYAARRI 897
            YW+L+K R+ +L++ T+  G  L +   +D      T  G  + AA+AN+LN L++   DA M+RT  RPLPSGRI    A  +A S+      LL W+AN L AGLA + ++ Y  +YT  LK+    N  +G   GAIPPL+GW A  G ++    IL A +  W  PHF ALA + R+DYAA ++
Sbjct:   23 YWQLTKPRIILLLLITTAAGMGLAAQGPLDPRLAIATLIGGGLAAAAANTLNCLYDRDIDAIMERTRWRPLPSGRIQPFEAWAFALSLAALSFILLDWQANQLAAGLALAGIVFYVVIYTHGLKRHSSQNIVIGGAAGAIPPLVGWAAVTGELAWPAWILFAIVCLWTPPHFWALALMIRDDYAAVKV 210          
BLAST of DY270887 vs. ExPASy Swiss-Prot
Match: COXX_SYNE7 (Protoheme IX farnesyltransferase OS=Synechococcus elongatus (strain PCC 7942) GN=ctaB PE=3 SV=2)

HSP 1 Score: 141.354 bits (355), Expect = 1.066e-32
Identity = 77/188 (40.96%), Postives = 109/188 (57.98%), Query Frame = 1
Query:  337 YWELSKARLSMLVVATSGTGFALGSGSTIDLAGLCWTCTGTMMVAASANSLNQLFEISNDAKMKRTMRRPLPSGRISVRHAVTWASSVGVAGTALLAWKANMLTAGLAASNLILYAFVYT-PLKQIHPVNTWVGAIVGAIPPLLGWTAAVGHVSLNGMILPATLYFWQKPHFMALAYLCRNDYAARRI 897
            YW+L+K R+ +L++ T+  G  L +   +D      T  G  + AA+AN+LN L++   DA M+RT  RPLPSGRI    A  +A S+      LL W+AN L AGLA + ++ Y  +YT  LK+    N  +G   GAIPPL+GW A  G ++    IL A +  W  PHF ALA + R+DYAA ++
Sbjct:   23 YWQLTKPRIILLLLITTAAGMGLAAQGPLDPRLAIATLIGGGLAAAAANTLNCLYDRDIDAIMERTRWRPLPSGRIQPFEAWAFALSLAALSFILLDWQANQLAAGLALAGIVFYVVIYTHGLKRHSSQNIVIGGAAGAIPPLVGWAAVTGELAWPAWILFAIVCLWTPPHFWALALMIRDDYAAVKV 210          
The following BLAST results are available for this feature:
BLAST of DY270887 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
COX10_MOUSE1.063e-4047.78Protoheme IX farnesyltransferase, mitochondrial OS... [more]
COX10_HUMAN7.619e-3946.96Protoheme IX farnesyltransferase, mitochondrial OS... [more]
COX10_PONAB8.424e-3846.67Protoheme IX farnesyltransferase, mitochondrial OS... [more]
COX10_ASPFU1.030e-3541.41Protoheme IX farnesyltransferase, mitochondrial OS... [more]
COX10_EMENI1.942e-3437.50Protoheme IX farnesyltransferase, mitochondrial OS... [more]
COXX_ACIBL4.327e-3440.74Protoheme IX farnesyltransferase OS=Acidobacteria ... [more]
COX10_GIBZE4.327e-3440.83Protoheme IX farnesyltransferase, mitochondrial OS... [more]
COX10_SCHPO3.663e-3341.08Protoheme IX farnesyltransferase, mitochondrial OS... [more]
COXX_SYNP61.066e-3240.96Protoheme IX farnesyltransferase OS=Synechococcus ... [more]
COXX_SYNE71.066e-3240.96Protoheme IX farnesyltransferase OS=Synechococcus ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP8YB13FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY270887 ID=DY270887; Name=DY270887; organism=Citrus clementina; type=EST; length=1214bp
CGGATTGCTCCCTTATAAACAAAAAATAAAAATAAAAATAAATAAATAAA
TAAATGATCTGGAAAATTCATTAGCAATACTCGGTTTCATGAAACCAAGC
AAATTCAACTAATCCAGGGTTCACCAGAATACCAAAACATGTGGAGAAAC
GTCGTCGTCCGACGACTTATATCTTATTCTCAGTCCAATCGGAGTCAACA
TTCATCGACAGAATTAGGGTTTCTCGTAAACAGAAAATGCCACGGTGTAC
GATCTTCTTCTTCAGCTTCAGCTTCGGATTCGGCCACCGGTGCAGCTGCT
GATCCGTTCTCGTTGATTCGCCATTACGGTCGCTGCTATTGGGAACTCTC
CAAAGCTCGCCTCAGCATGTTAGTTGTTGCTACATCAGGAACTGGATTTG
CATTGGGGAGTGGAAGTACCATTGATTTAGCTGGACTTTGTTGGACCTGT
ACTGGCACTATGATGGTTGCTGCCTCTGCTAATTCTCTTAATCAGTTGTT
TGAGATAAGCAATGATGCCAAAATGAAGCGAACAATGCGAAGACCTCTGC
CTTCTGGCAGAATTTCGGTACGCCATGCTGTCACCTGGGCATCTTCTGTT
GGTGTTGCTGGCACTGCTTTATTGGCATGGAAGGCTAATATGTTGACAGC
TGGGCTTGCAGCCTCTAACCTTATTCTTTATGCATTTGTGTACACGCCAT
TGAAGCAGATTCACCCGGTCAATACGTGGGTGGGGGCTATTGTTGGAGCT
ATTCCACCTCTTCTTGGGTGGACTGCAGCTGTTGGCCATGTTTCTCTNAA
TGGAATGATTCTCCCTGCAACTCTCTATTTTTGGCAAAAACCCCATTTTA
TGGCTCTTGCCTACTTGTGCCGCAACGATTATGCTGCCCGGAGGATATAG
GATGATCTCCCTTGCTGAAGCTTCCGGTCAAAAAACTGCTTTGGTGGCCC
TCAAGAAACTGCTGGTACTGGGCCCCTTTGGGAAACTTGGCCCTATGATT
GGGGGGTGAATTCCTGGTTGGTTTTTTTCTTAAATCCACCCTTGAAACCC
TCAAACAAAAAAATGGCGCGGGCCTTTTTTCTTTTCTATCCAAAACCAAA
AAATACCCAAAAAACCCACAAAAAAAAGTTTTTCCGGGGCCAACCCCCCC
CTGTAATCTTTTCCCAAACTTTTCTTATTGTTCCCGGGGGCCCCCCATTT
TTTTCCCCGCCCTC
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