DY270901

Overview
NameDY270901
Unique NameDY270901
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1222
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig3762 contig Ccv1_Contig3762:1..1222. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY270901 vs. ExPASy Swiss-Prot
Match: ASD1_ARATH (Alpha-L-arabinofuranosidase 1 OS=Arabidopsis thaliana GN=ASD1 PE=1 SV=1)

HSP 1 Score: 439.884 bits (1130), Expect = 2.316e-133
Identity = 193/250 (77.20%), Postives = 225/250 (90.00%), Query Frame = 1
Query:    1 DVSNWTRVETLLEAKETNPNARLQLTTSREGIIWFDQVSAMPLDTYKGHGFRNDLFQMLANLKPRFVRFPGGCFVEGEWLRNAFRWKASIGPWENRPGHFGDVWMYWTDDGLGYFEFLQLAEDLGALPIWVFNNGISHTDEVDTSAVLPFVQEALDGIEFARGDPNSTWGSVRAAMGHPDPFDLRYVAVGNEDCGKKNYRGNYLKFYDAIKRTYPDIGIISNCDGSSSPLDHKADFYDFHIYTSANDLFS 750
            DVS W + E LLEAK T+P+ARLQLTT+++G IW DQVSAMP+DT+KGHGFRNDLFQM+A++KPRF+RFPGGCFVEGEWL NAFRWK ++GPWE RPGHFGDVW YWTDDGLG+FEF Q+AED+GA PIWVFNNGISH DEV+T++++PFVQEALDGIEFARGD NSTWGSVRA MG  +PF+L+YVA+GNEDCGK  YRGNY+ FYDAIK+ YPDI IISNCDGSS PLDH AD+YD+HIYTSA++LFS
Sbjct:  197 DVSKWIKKEVLLEAKATDPSARLQLTTTKKGSIWIDQVSAMPVDTHKGHGFRNDLFQMMADIKPRFIRFPGGCFVEGEWLSNAFRWKETVGPWEERPGHFGDVWKYWTDDGLGHFEFFQMAEDIGAAPIWVFNNGISHNDEVETASIMPFVQEALDGIEFARGDANSTWGSVRAKMGRQEPFELKYVAIGNEDCGKTYYRGNYIVFYDAIKKAYPDIKIISNCDGSSHPLDHPADYYDYHIYTSASNLFS 446          

HSP 2 Score: 58.9214 bits (141), Expect = 2.316e-133
Identity = 33/62 (53.23%), Postives = 38/62 (61.29%), Query Frame = 3
Query:  756 HKFDHTSRTGPKAFLSEYAVHGNDAGMGIF*PPFAER*FLY*AWKKTVMFVAWATYSPLFCN 941
            H+FD TSR GPKAF+SEYAV G DAG G      AE  FL    +K    V  A+Y+PLF N
Sbjct:  449 HQFDRTSRKGPKAFVSEYAVTGKDAGTGSLLASLAEAAFLI-GLEKNSDIVEMASYAPLFVN 509          
BLAST of DY270901 vs. ExPASy Swiss-Prot
Match: ASD2_ARATH (Alpha-L-arabinofuranosidase 2 OS=Arabidopsis thaliana GN=ASD2 PE=2 SV=1)

HSP 1 Score: 426.787 bits (1096), Expect = 1.283e-118
Identity = 189/251 (75.30%), Postives = 219/251 (87.25%), Query Frame = 1
Query:    1 DVSNWTRVETLLEAKETNPNARLQLTTSREGIIWFDQVSAMPLDTYKGHGFRNDLFQMLANLKPRFVRFPGGCFVEGEWLRNAFRWKASIGPWENRPGHFGDVWMYWTDDGLGYFEFLQLAEDLGALPIWVFNNGISHTDEVDTSAVLPFVQEALDGIEFARGDPNSTWGSVRAAMGHPDPFDLRYVAVGNEDCGKKNYRGNYLKFYDAIKRTYPDIGIISNCDGSSSPLDHKADFYDFHIYTSANDLFSR 753
            D+ NWT+ E LLEA  T+  ARLQ TT+++G IWFDQVSAMP+DTYKGHGFRNDLFQM+ +LKPRF+RFPGGCFVEG+WL NAFRWK ++  WE RPGH+GDVW YWTDDGLG+FEF QLAEDLGA PIWVFNNGISH D+V+T  V+PFVQEA+DGIEFARGD NSTWGSVRAAMGHP+PF+L+YVAVGNEDC K  YRGNYL+FY+AIK+ YPDI IISNCD S+ PLDH AD++D+HIYT A DLFS+
Sbjct:  196 DLLNWTKKEMLLEANGTDNGARLQFTTTKKGSIWFDQVSAMPMDTYKGHGFRNDLFQMMVDLKPRFIRFPGGCFVEGDWLGNAFRWKETVRAWEERPGHYGDVWKYWTDDGLGHFEFFQLAEDLGASPIWVFNNGISHNDQVETKNVMPFVQEAIDGIEFARGDSNSTWGSVRAAMGHPEPFELKYVAVGNEDCFKSYYRGNYLEFYNAIKKAYPDIKIISNCDASAKPLDHPADYFDYHIYTLARDLFSK 446          
BLAST of DY270901 vs. ExPASy Swiss-Prot
Match: ABF1_STRCX (Alpha-N-arabinofuranosidase 1 OS=Streptomyces chartreusis PE=1 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 2.659e-38
Identity = 94/269 (34.94%), Postives = 133/269 (49.44%), Query Frame = 1
Query:   13 WTRVETLLEAKETNPNARLQLTTSREGIIWFDQVSAMPLDTYKG--HGFRNDLFQMLANLKPRFVRFPGGCFVE-----------GEWLRNAFRWKASIGPWENRPGHFGDVWMYWTDDGLGYFEFLQLAEDLGALPIWVFN---NGISHTDEVDTSAVLP-FVQEALDGIEFARGDPNSTWGSVRAAMGHPDPFDLRYVAVGNEDCGKKNYRGNYLKFYDAIKRTYPDIGIISNC--DGSSSPLD--------HKADFYDFHIYTSAN 738
            W +      A  T+   RL +  +    +  D VS  P DTY+   +G R DL + +A L P FVRFPGGC V            G   + +++WK ++GP E R  +  + W Y    GLGY+E+ + +ED+GA+P+ V      G      VD  A+L   +Q+ LD IEFA G   S WG VRA MGHP PF L ++ VGNE+     +   + +F  AI+  YPDI ++SN   D + +  D           +  D H Y S N
Sbjct:  179 WAKYRATFTATRTSNRGRLAVAANDAAAL--DMVSLFPRDTYRNQQNGLRKDLAEKIAALHPGFVRFPGGCLVNTGSMEDYSAASGWQRKRSYQWKDTVGPVEERATN-ANFWGYNQSYGLGYYEYFRFSEDIGAMPLPVVPALVTGCGQNKAVDDEALLKRHIQDTLDLIEFANGPATSKWGKVRAEMGHPRPFRLTHLEVGNEENLPDEFFDRFKQFRAAIEAEYPDITVVSNSGPDDAGTTFDTAWKLNREANVEMVDEHYYNSPN 444          

HSP 2 Score: 32.3426 bits (72), Expect = 2.659e-38
Identity = 22/76 (28.95%), Postives = 33/76 (43.42%), Query Frame = 3
Query:  759 KFDHTSRTGPKAFLSEYAVHGNDAGMGIF*PPFAER*FLY*AWKKTVMFVAWATYSPLFCNGQWTNGGTPECICFS 986
            ++D   R GPK FL EYA  GN    G+    F          ++    V  A+Y+PL  N  +     P+ + F+
Sbjct:  452 RYDSYDRGGPKVFLGEYASQGNAWKNGLSEAAFMT------GLERNADVVKLASYAPLLANEDYVQ-WRPDLVWFN 520          
BLAST of DY270901 vs. ExPASy Swiss-Prot
Match: ABFA_ASPNG (Alpha-N-arabinofuranosidase A OS=Aspergillus niger GN=abfA PE=1 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 4.682e-28
Identity = 74/219 (33.79%), Postives = 121/219 (55.25%), Query Frame = 1
Query:  130 DTYKG--HGFRNDLFQMLANLKPRFVRFPGGCFVEGEWLRNAFRWKASIGPWENRPGHFGDVWMYWTDDGLGYFEFLQLAEDLGALPIWVFNNGISHTDEVDT----SAVLPFVQEALDGIEFARGDPNSTWGSVRAAMGHPDPFDLRYVAVGNEDC---GKKNYRGNYLKFYDAIKRTYPDIGII-----SNCDGSSSPLDHKADFYDFHIYTSANDL 744
            +TYK   +G +  L  +L ++K  F+RFPGG  +EG    N ++W  +IG   +RPG  G  W Y+  DGLG  E+    EDLG +P+    +G +     +T     A+ P++ + L+ +E+  GD ++T+G+ RAA G  +P++L  V +GNED    G ++Y   +  FYDAI   YPD+ +I     ++C   S P   +  + D+H Y++ + L
Sbjct:  215 ETYKSRENGLKPQLANVLDDMKGSFLRFPGGNNLEGNSAENRWKWNETIGDLCDRPGREG-TWTYYNTDGLGLHEYFYWCEDLGLVPVLGVWDGFALESGGNTPLTGDALTPYIDDVLNELEYILGDTSTTYGAWRAANGQEEPWNLTMVEIGNEDMLGGGCESYAERFTAFYDAIHAAYPDLILIASTSEADCLPESMP---EGSWVDYHDYSTPDGL 429          
BLAST of DY270901 vs. ExPASy Swiss-Prot
Match: ABF2_BACOV (Alpha-N-arabinofuranosidase 2 OS=Bacteroides ovatus GN=asdII PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.910e-13
Identity = 64/230 (27.83%), Postives = 94/230 (40.87%), Query Frame = 1
Query:   91 GIIWFDQVSAMPLDTYKGHGFRNDLFQMLANLKPRFVRFPGGCFVEGEWLRNAFRWKASIGPWENRPGHFGDVWMYWTDD-GLGYFEFLQLAEDLGALPIWVFNNGISHTDEVDTSAVLPFVQEALDGIEFARGDPNSTWGSVRAAMGHPDPFDLRYVAVGNEDCG-----KKNYRGNYLKFYDAIKRTYPDIGIISNCDGSS-----------SPLDHKADFYDFHIYT 729
            G +W  + S +P       G+R D+F  L +L    +R+PGGCF +       + W   IGP ENRP    + W    +D   G  EFL L E LG  P +V  N  S T           V+E    +E+   D +S   ++R   G    + L+Y+ VGNE  G     +  Y  +  + Y    R Y    +     G+S           + + H+ D    H YT
Sbjct:   55 GGLWVGENSDIP----NIKGYRTDVFNALKDLSVPVLRWPGGCFAD------EYHWMDGIGPKENRPKMVNNNWGGTIEDNSFGTHEFLNLCEMLGCEP-YVSGNVGSGT-----------VEELAKWVEYMTSDGDSPMANLRRKNGRDKAWKLKYLGVGNESWGCGGSMRPEYYADLYRRYSTYCRNYDGNRLFKIASGASDYDYKWTDVLMNRVGHRMDGLSLHYYT 262          
The following BLAST results are available for this feature:
BLAST of DY270901 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
ASD1_ARATH2.316e-13377.20Alpha-L-arabinofuranosidase 1 OS=Arabidopsis thali... [more]
ASD2_ARATH1.283e-11875.30Alpha-L-arabinofuranosidase 2 OS=Arabidopsis thali... [more]
ABF1_STRCX2.659e-3834.94Alpha-N-arabinofuranosidase 1 OS=Streptomyces char... [more]
ABFA_ASPNG4.682e-2833.79Alpha-N-arabinofuranosidase A OS=Aspergillus niger... [more]
ABF2_BACOV1.910e-1327.83Alpha-N-arabinofuranosidase 2 OS=Bacteroides ovatu... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAP8YC15FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY270901 ID=DY270901; Name=DY270901; organism=Citrus clementina; type=EST; length=1222bp
GATGTTTCAAACTGGACAAGGGTGGAAACTTTGTTGGAAGCCAAAGAAAC
AAATCCTAATGCAAGACTTCAACTGACAACTTCAAGAGAAGGCATTATAT
GGTTTGATCAAGTGTCAGCTATGCCTTTGGACACATACAAGGGACATGGT
TTTCGAAATGATCTCTTCCAAATGCTTGCAAATCTTAAACCTCGATTCGT
CAGATTTCCAGGTGGCTGTTTTGTTGAAGGTGAATGGTTAAGAAATGCAT
TTCGCTGGAAAGCAAGCATTGGACCCTGGGAAAATAGACCTGGGCACTTT
GGTGATGTTTGGATGTATTGGACAGATGATGGCCTTGGTTATTTTGAGTT
CCTTCAACTAGCGGAAGACCTTGGTGCGCTGCCCATATGGGTATTTAACA
ATGGAATCAGCCATACTGATGAAGTCGATACTTCCGCTGTCTTACCTTTT
GTGCAAGAAGCCCTTGATGGTATTGAGTTTGCAAGAGGTGATCCAAACTC
TACATGGGGTTCTGTACGAGCTGCAATGGGACATCCTGATCCTTTTGACT
TGAGATATGTTGCTGTTGGGAATGAAGATTGTGGGAAAAAGAATTACAGA
GGAAACTACCTCAAGTTCTATGATGCTATAAAACGTACCTACCCAGACAT
TGGAATAATCTCAAACTGTGACGGATCTTCTAGTCCATTGGATCATAAAG
CTGATTTTTATGATTTTCATATTTATACATCTGCCAACGACTTGTTTTCA
AGACTCATAAGTTTGATCATACATCACGCACTGGTCCCAAGGCCTTCCTT
AGTGAATATGCTGTGCACGGAAATGATGCTGGCATGGGAATCTTTTAACC
ACCCTTTGCTGAAAGGTGATTCCTTTATTGAGCCTGGAAAAAAACAGTGA
TGTTTGTTGCATGGGCAACCTATTCCCCCCTTTTTTGTAATGGCCAATGG
ACGAATGGGGGAACTCCGGAATGCATTTGTTTTTCAATCTGCCCAACCTC
TTTGGAAAACCCCAACCTCCGGGGGTGCAAAAATTTTTTTCAAAAAATCA
AGTGGGGGCACCTCTTTCTTCAATGGCCCCCCCGGCCAAAAAAATTTCTC
CTATTTTTATATTTTTCCCCCTCTTGCAATTTTTTGTGGGGAAAAAAAAA
CAAAAAAAAGTGCCAAAAAATTTTTCCCCGAAAAAAAAAAAAGGGGGGTT
GTGAAAACCCCCCACCGAGAAC
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