DY270951

Overview
NameDY270951
Unique NameDY270951
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1089
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY270951 vs. ExPASy Swiss-Prot
Match: Y1044_ARATH (BTB/POZ domain-containing protein At1g30440 OS=Arabidopsis thaliana GN=At1g30440 PE=1 SV=2)

HSP 1 Score: 128.642 bits (322), Expect = 6.171e-29
Identity = 73/137 (53.28%), Postives = 88/137 (64.23%), Query Frame = 1
Query:  544 MACVKLGSKTDAFQRQGQAWFCTSGLPSDIVVEVGEMSFHLHKFPLLSRSGAMERLIAKASEKAEKKCII---NLP*HSWAGPKHLN*WPSSAMVGNLN*LASMLCPYNVLLNILKRQRKMAMGIFITQTKTFFQSI 945
            MAC+KLGSK+DAFQRQGQAWFCT+GLPSDIVVEVGEMSFHLHKFPLLSRSG MER IA+AS++ + KC+I   +LP     G K             L   AS +         L+   +   G  I+QT+TFF  +
Sbjct:    1 MACMKLGSKSDAFQRQGQAWFCTTGLPSDIVVEVGEMSFHLHKFPLLSRSGVMERRIAEASKEGDDKCLIEISDLP----GGDKTFELVAKFCYGVKLELTASNVVYLRCAAEHLEMTEEHGEGNLISQTETFFNQV 133          
BLAST of DY270951 vs. ExPASy Swiss-Prot
Match: RPT3_ARATH (Root phototropism protein 3 OS=Arabidopsis thaliana GN=RPT3 PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.496e-23
Identity = 31/56 (55.36%), Postives = 46/56 (82.14%), Query Frame = 1
Query:  562 GSKTDAFQRQGQAWFCTSGLPSDIVVEVGEMSFHLHKFPLLSRSGAMERLIAKASE 729
            G KTD F+ +GQ+WF  + +PSD++V++G+M+FHLHK+PLLSRSG M RLI ++ +
Sbjct:   32 GVKTDGFELRGQSWFVATDIPSDLLVKIGDMNFHLHKYPLLSRSGKMNRLIYESRD 87          

HSP 2 Score: 54.6842 bits (130), Expect = 3.496e-23
Identity = 23/51 (45.10%), Postives = 35/51 (68.63%), Query Frame = 3
Query:  774 GGAKTFELVAQFCYGGKLELTGLNVVSLQCAAEHLEKTKENGHGNLYYPNQ 926
            GG + FEL ++FCYG  ++LT  N+  L+CAAE+LE T++   GNL +  +
Sbjct:  100 GGPEAFELASKFCYGVPVDLTATNISGLRCAAEYLEMTEDLEEGNLIFKTE 150          
BLAST of DY270951 vs. ExPASy Swiss-Prot
Match: NPH3_ORYSJ (Coleoptile phototropism protein 1 OS=Oryza sativa subsp. japonica GN=CPT1 PE=2 SV=1)

HSP 1 Score: 63.5438 bits (153), Expect = 1.579e-19
Identity = 25/57 (43.86%), Postives = 43/57 (75.44%), Query Frame = 1
Query:  568 KTDAFQRQGQAWFCTSGLPSDIVVEVGEMSFHLHKFPLLSRSGAMERLIAKASEKAE 738
            K D F R+ ++W+  S +PSD++V+VG+++F+LHK+P++SRSG M R + ++S   E
Sbjct:   32 KNDGFVRRDRSWYVNSDIPSDLLVKVGDVNFYLHKYPMISRSGRMSRAVYESSAADE 88          

HSP 2 Score: 54.6842 bits (130), Expect = 1.579e-19
Identity = 25/51 (49.02%), Postives = 35/51 (68.63%), Query Frame = 3
Query:  774 GGAKTFELVAQFCYGGKLELTGLNVVSLQCAAEHLEKTKENGHGNLYYPNQ 926
            GGA +FEL A+F YG  ++LT  N+  L+CAAE+LE T+E   GNL +  +
Sbjct:  107 GGAGSFELAARFSYGMAVDLTAANISGLRCAAEYLEMTEEMEEGNLIFKTE 157          
BLAST of DY270951 vs. ExPASy Swiss-Prot
Match: Y5880_ARATH (BTB/POZ domain-containing protein At5g48800 OS=Arabidopsis thaliana GN=At5g48800 PE=1 SV=1)

HSP 1 Score: 53.5286 bits (127), Expect = 5.717e-15
Identity = 25/50 (50.00%), Postives = 32/50 (64.00%), Query Frame = 3
Query:  762 LTFLGGAKTFELVAQFCYGGKLELTGLNVVSLQCAAEHLEKTKENGHGNL 911
            L   GGA+TFEL A+FCYG   E+T  NV  L C +++LE T+E    NL
Sbjct:   86 LNLPGGAETFELAAKFCYGINFEITSSNVAQLFCVSDYLEMTEEYSKDNL 135          

HSP 2 Score: 49.2914 bits (116), Expect = 5.717e-15
Identity = 29/78 (37.18%), Postives = 44/78 (56.41%), Query Frame = 1
Query:  532 HRQKMACVKLGSKTDAFQRQGQAWFCTSGLPSDIVVEVGEMSFHLHKFPLLSRSGAMERLIAKASEKAEKKC-IINLP 762
            H QK++  K         RQ  + +    +PSDI +EV   +F LHKFPL+SRSG + R++A+  +    K  ++NLP
Sbjct:   19 HHQKLSLAKSS-------RQSCSEWIFRDVPSDITIEVNGGNFALHKFPLVSRSGRIRRIVAEHRDSDISKVELLNLP 89          
BLAST of DY270951 vs. ExPASy Swiss-Prot
Match: RPT2_ARATH (Root phototropism protein 2 OS=Arabidopsis thaliana GN=RPT2 PE=1 SV=2)

HSP 1 Score: 49.6766 bits (117), Expect = 8.244e-13
Identity = 22/59 (37.29%), Postives = 39/59 (66.10%), Query Frame = 1
Query:  553 VKLGSKTDAFQRQGQAWFCTSGLPSDIVVEVGEMSFHLHKFPLLSRSGAMERLIAKASE 729
            + + S + +  R GQ W  +  +P+D+VVEVGE +F LHKF L+++S  + +LI ++ +
Sbjct:    9 INMNSMSSSLARTGQ-WVFSQDIPTDVVVEVGEANFSLHKFMLVAKSNYIRKLIMESKD 66          

HSP 2 Score: 45.8246 bits (107), Expect = 8.244e-13
Identity = 22/46 (47.83%), Postives = 28/46 (60.87%), Query Frame = 3
Query:  774 GGAKTFELVAQFCYGGKLELTGLNVVSLQCAAEHLEKTKENGHGNL 911
            GG + FE  A+FCYG   E+T  NV +L CAAE L+ T +    NL
Sbjct:   79 GGPEIFEKAAKFCYGVNFEITVQNVAALHCAAEFLQMTDKYCDNNL 124          
The following BLAST results are available for this feature:
BLAST of DY270951 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
Y1044_ARATH6.171e-2953.28BTB/POZ domain-containing protein At1g30440 OS=Ara... [more]
RPT3_ARATH3.496e-2355.36Root phototropism protein 3 OS=Arabidopsis thalian... [more]
NPH3_ORYSJ1.579e-1943.86Coleoptile phototropism protein 1 OS=Oryza sativa ... [more]
Y5880_ARATH5.717e-1550.00BTB/POZ domain-containing protein At5g48800 OS=Ara... [more]
RPT2_ARATH8.244e-1337.29Root phototropism protein 2 OS=Arabidopsis thalian... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAP8YF22FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY270951 ID=DY270951; Name=DY270951; organism=Citrus clementina; type=EST; length=1089bp
TATGGAATCTTCTCCGTGAGGCTTGAGGCCGAGATGAAAGGGTTTTGATT
TTATGAAAGGAAAAGTGGAGGGGTTGACCAAATTAGGAAGTTTGGTGGTT
TTAGGCTGAGAATTTAGTGCTTCTTCTGAAGTTGTTTTATGGTTAATTTT
ACATGGGATCAGAACTGGGTTTCTGAAAAGATTAACCTATTGATTGACTT
TGGGGAAGTTTTTTTCTGAGAGTAGAGCGGCCTTGTGCTGTTTTCTGGGC
TTGTTTTTTACATAAATGTCATAGAAGAAGCTACATTTTGGTGCTCTTGC
TACAATTTAGAAGATGAAGTCTGAGGAATTTTGGGTTGTTTTCTCAACGT
TTTTGTGGGTAAATTTGGTTTGAGAGTGGCGTGCACTGTGCAGGAGCAAA
ACTCAACTCGGATTGTGTGTTTGTTTGTGGAAGTGCTTTGGTTTGGGGTA
TTTTAGGTTGTATTGTTCTTAAGTTAGGTGTTTAGCTTAGCTCTTTACTT
GAAGCTCTATTTTTTATTTGATCCCAGCCTGCATCGTCAGAAAATGGCTT
GCGTGAAACTGGGATCCAAAACTGATGCGTTTCAACGGCAAGGACAGGCA
TGGTTCTGCACATCTGGTCTTCCTAGTGATATAGTTGTTGAAGTTGGAGA
GATGTCCTTCCACCTCCACAAGTTCCCATTACTCTCTAGAAGTGGGGCTA
TGGAAAGATTGATTGCAAAAGCATCTGAAAAGGCAGAAAAAAAATGTATC
ATAAACCTCCCTTGACATTCCTGGGCGGGGCCAAAACATTTGAACTAGTG
GCCCAGTTCTGCTATGGTGGGAAACTTGAACTAACTGGCCTCAATGTTGT
GTCCTTACAATGTGCTGCTGAACATCTTGAAAAGACAAAGGAAAATGGCC
ATGGGAATCTTTATTACCCAAACCAAAACCTTTTTCCAATCAATTAATCC
CTTTCAAACCGGAAAAAATTCTCAAAAAAACCCGTCCAACCTGTTAAAAA
ATTTTCCCCTTTAACGAAAAAAAAATAAACTTTACAAAAAGAGGGTTATT
GAGTCCCCCCCCTTTGGAAAGCGCACTCTCACGGCCCCC
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