DY270964

Overview
NameDY270964
Unique NameDY270964
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1279
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY270964 vs. ExPASy Swiss-Prot
Match: BBP_CRYNE (Branchpoint-bridging protein OS=Cryptococcus neoformans GN=BBP PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 6.069e-18
Identity = 66/179 (36.87%), Postives = 98/179 (54.75%), Query Frame = 1
Query:  490 RKRRSRWADDEPKPVIQLPDFMKDFTGGI-EFDPEIQALNSRLLEISRMLQSGLPLDDRPEGQRSPSPEPIYDNMGIKINTREYRARERLNKERQEIISQIIKKIRH------LSHRQIIGPQSFKKSLLFRMKDYPGLNFYWFGLWGQEGIHKKKREKETGGLNCLSRVKGSVEKGKG 1005
            RKRRSRW D   K  + +P       G + + + +  A++ RL EI+R L++G  +   PEGQRSPSP P YD  G + NTRE R R++L  ER  +I + +K   +        H++   PQ     +   +K++P +NF+   L G  G   KK E+E+G    + R KGSV++GKG
Sbjct:  129 RKRRSRWGDASAK--VNVPGMPVAVMGNVSQTELDNYAIHVRLEEINRKLRTGDVVP--PEGQRSPSPTPQYDAYGRRTNTRELRYRKKLEDERTRLIDRAVKSDPNFRPPVDFQHKRGSRPQD---KVYIPVKEFPEINFFGL-LVGPRGNSLKKMERESGAKISI-RGKGSVKEGKG 298          
BLAST of DY270964 vs. ExPASy Swiss-Prot
Match: BBP_ASPFU (Branchpoint-bridging protein OS=Aspergillus fumigatus GN=bbp PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 1.495e-16
Identity = 66/179 (36.87%), Postives = 95/179 (53.07%), Query Frame = 1
Query:  490 RKRRSRWADDEPKP---VIQLPDF-MKDFTGGIEFDPEIQALNSRLLEISRMLQSG--LPLDDRPEGQRSPSPEPIYDNMGIKINTREYRARERLNKERQEIISQIIKKI-RHLSHRQIIGPQSFKKSLLFRMKDYPGLNFYWFGLWGQEGIHKKKREKETGGLNCLSRVKGSVEKGKG 1005
            RK+R+RW D +      ++ LP   M +FT       E   L+ R+ EIS+ L+    +P D    G RSPSP P YDN G ++NTREYR R+RL  ER +++ + +K I  +        P   ++ +   + DYP +NF    L G  G   KK E E+G    + R KGSV++GKG
Sbjct:   64 RKKRNRWGDAQENKAAGLMGLPTMIMANFTNE---QLEAYTLHLRIEEISQKLRINDVVPAD----GDRSPSPPPQYDNFGRRVNTREYRYRKRLEDERHKLVEKAMKTIPNYHPPSDYRRPTKTQEKVYVPVNDYPEINFIGL-LIGPRGNTLKKMEAESGAKIAI-RGKGSVKEGKG 233          
BLAST of DY270964 vs. ExPASy Swiss-Prot
Match: BBP_NEUCR (Branchpoint-bridging protein OS=Neurospora crassa GN=bpb-1 PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 4.809e-15
Identity = 60/176 (34.09%), Postives = 90/176 (51.14%), Query Frame = 1
Query:  490 RKRRSRWADDEPKPVIQLPDFMKDFTGGIEFDP-EIQALNSRLLEISRMLQSGLPLDD--RPEGQRSPSPEPIYDNMGIKINTREYRARERLNKERQEIISQIIKKI-RHLSHRQIIGPQSFKKSLLFRMKDYPGLNFYWFGLWGQEGIHKKKREKETGGLNCLSRVKGSVEKGKG 1005
            RK+R+RW +        L          +  +  E   L+ R+ EI++ L+    +DD    +G RSPSP P YDN G ++NTREYR R++L  ER ++I + +K I  +        P   ++ +   + DYP +NF    L G  G   KK E E+G    + R KGSV++GKG
Sbjct:   79 RKKRNRWGEATENKAAGLMGLPTAIVANMTSEQLEAYTLHLRIEEITQKLK----IDDVVPADGDRSPSPAPQYDNHGRRVNTREYRYRKKLEDERHKLIEKAMKTIPNYHPPSDYRRPTKTQEKVYVPVNDYPEINFIGL-LIGPRGNTLKKMETESGAKIAI-RGKGSVKEGKG 248          
BLAST of DY270964 vs. ExPASy Swiss-Prot
Match: BBP_USTMA (Branchpoint-bridging protein OS=Ustilago maydis GN=BBP PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 1.827e-14
Identity = 63/178 (35.39%), Postives = 92/178 (51.69%), Query Frame = 1
Query:  490 RKRRSRWADDEPKPVIQLPDFMKDFTGGIEFDPEIQALNSRLLEISRMLQSG--LPLDDRPEGQRSPSPEPIYDNMGIKINTREYRARERLNKERQEIISQIIKKIRHL----SHRQIIGPQSFKKSLLFRMKDYPGLNFYWFGLWGQEGIHKKKREKETGGLNCLSRVKGSVEKGKG 1005
            RKR+SRW D   K  I +P  +       E D    A+  RL EISR L+SG  +P    P+ +RSPSP P YDN G + NTRE R R++L  ER  ++ + +K   +      +  I   Q   + +   +K++P + F+   L G  G   K  E+++G    + R KGSV+ GKG
Sbjct:  133 RKRKSRWGDANDK--ITIPTAIGANVSAQELDK--YAIQVRLDEISRKLRSGDFVP----PDRERSPSPPPTYDNQGRRTNTREVRYRKKLEDERVALVDRQLKLDPNFRPPSDYHAIKRNQRPTEKVYLPIKEFPEIKFFGL-LVGPRGNTLKTMERQSGAKISI-RGKGSVKTGKG 300          
BLAST of DY270964 vs. ExPASy Swiss-Prot
Match: BBP_YARLI (Branchpoint-bridging protein OS=Yarrowia lipolytica GN=BBP PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.547e-13
Identity = 60/177 (33.90%), Postives = 98/177 (55.37%), Query Frame = 1
Query:  493 KRRSRWADDEPK--PVIQLPDFMKDFTGGIEFDP-EIQALNSRLLEISRMLQSGLPLDDRPEGQRSPSPEPIYDNMGIKINTREYRARERLNKERQEIISQIIKKIRHLSHRQIIG---PQSFKKSLLFRMKDYPGLNFYWFGLWGQEGIHKKKREKETGGLNCLSRVKGSVEKGKG 1005
            +R+ RW+  E K   ++Q+P  +   TG +  +  E  A+  R+ EIS+ L+ G  +   PE +RSPSP P YD+MG + NTR+ R   +L +ER  +I +  + I   ++R  +    P   ++ +   + +YP +NF    L G  G   KK E+E+G   C+ R +GSV++GKG
Sbjct:   64 RRKQRWSHGENKVADLLQMPTAL---TGHLTPEQAEAYAIYYRIEEISQQLRLGDIVP--PEDERSPSPPPQYDSMGKRTNTRDARYTRQLEEERHRLIERAQRLIP--NYRPPVDYHKPAKTQEVVYIPVNEYPDINFIG-QLLGARGKTLKKMEQESGAKICI-RGRGSVKQGKG 231          
BLAST of DY270964 vs. ExPASy Swiss-Prot
Match: SF01_MOUSE (Splicing factor 1 OS=Mus musculus GN=Sf1 PE=1 SV=5)

HSP 1 Score: 77.411 bits (189), Expect = 2.020e-13
Identity = 56/179 (31.28%), Postives = 93/179 (51.96%), Query Frame = 1
Query:  490 RKRRSRWADDEPKPVIQLPDFMKDFTGGIEFDPE-IQALNSRLLEISRMLQSG-LPLDDRPEGQRSPSPEPIYDNMGIKINTREYRARERLNKERQEIISQIIKKIRHLSHRQIIGPQSFKKS--LLFRMKDYPGLNFYWFGLWGQEGIHKKKREKETGGLNCLSRVKGSVEKGKGSNK 1014
            +++RSRW  D  +    +P        G+  + E    +  ++ +++R L++G L +   PE  RSPSPEPIY++ G ++NTRE+R R++L +ER  +I++++             P + + S  ++    +YP +NF    L G  G   K  EKE      + R KGSVE+GK   K
Sbjct:   16 KRKRSRWNQDTMEQKTVIPGMPTVIPPGLTREQERAYIVQLQIEDLTRKLRTGDLGIPPNPE-DRSPSPEPIYNSEGKRLNTREFRTRKKLEEERHTLITEMVALNPDFKPPADYKPPATRVSDKVMIPQDEYPEINFVGL-LIGPRGNTLKNIEKECNA-KIMIRGKGSVEEGKVGRK 191          
BLAST of DY270964 vs. ExPASy Swiss-Prot
Match: SF01_HUMAN (Splicing factor 1 OS=Homo sapiens GN=SF1 PE=1 SV=4)

HSP 1 Score: 76.2554 bits (186), Expect = 4.501e-13
Identity = 55/179 (30.73%), Postives = 93/179 (51.96%), Query Frame = 1
Query:  490 RKRRSRWADDEPKPVIQLPDFMKDFTGGIEFDPE-IQALNSRLLEISRMLQSG-LPLDDRPEGQRSPSPEPIYDNMGIKINTREYRARERLNKERQEIISQIIKKIRHLSHRQIIGPQSFKKS--LLFRMKDYPGLNFYWFGLWGQEGIHKKKREKETGGLNCLSRVKGSVEKGKGSNK 1014
            +++RSRW  D  +    +P        G+  + E    +  ++ +++R L++G L +   PE  RSPSPEPIY++ G ++NTRE+R R++L +ER  +I++++             P + + S  ++    +YP +NF    L G  G   K  EKE      + R KGSV++GK   K
Sbjct:   16 KRKRSRWNQDTMEQKTVIPGMPTVIPPGLTREQERAYIVQLQIEDLTRKLRTGDLGIPPNPE-DRSPSPEPIYNSEGKRLNTREFRTRKKLEEERHNLITEMVALNPDFKPPADYKPPATRVSDKVMIPQDEYPEINFVGL-LIGPRGNTLKNIEKECNA-KIMIRGKGSVKEGKVGRK 191          
BLAST of DY270964 vs. ExPASy Swiss-Prot
Match: BBP_SCHPO (Branchpoint-bridging protein OS=Schizosaccharomyces pombe GN=bpb1 PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 5.878e-13
Identity = 52/140 (37.14%), Postives = 76/140 (54.29%), Query Frame = 1
Query:  589 EIQALNSRLLEISRMLQSGLPLDDRPEGQRSPSPEPIYDNMGIKINTREYRARERLNKERQEIISQIIKKIRHL-SHRQIIGPQSFKKSLLFRMKDYPGLNFYWFGLWGQEGIHKKKREKETGGLNCLSRVKGSVEKGKG 1005
            E+ +LN RL EI++ L++G  +    E  RSPSP P YDN G ++NTRE R +++L  ER  II + +K +    +      P   ++ +   +KDYP +NF    L G  G H  K  +   G     R KGSV++GKG
Sbjct:  103 ELYSLNVRLEEITQKLRTGDVVPHHRE--RSPSPPPQYDNHGRRLNTREIRYKKKLEDERHRIIERAMKMVPGFRAPSDYRRPAKTQEKVYVPVKDYPEINFIGL-LIGPRG-HTLKDMEAKSGAKIAIRGKGSVKEGKG 238          
The following BLAST results are available for this feature:
BLAST of DY270964 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
BBP_CRYNE6.069e-1836.87Branchpoint-bridging protein OS=Cryptococcus neofo... [more]
BBP_ASPFU1.495e-1636.87Branchpoint-bridging protein OS=Aspergillus fumiga... [more]
BBP_NEUCR4.809e-1534.09Branchpoint-bridging protein OS=Neurospora crassa ... [more]
BBP_USTMA1.827e-1435.39Branchpoint-bridging protein OS=Ustilago maydis GN... [more]
BBP_YARLI1.547e-1333.90Branchpoint-bridging protein OS=Yarrowia lipolytic... [more]
SF01_MOUSE2.020e-1331.28Splicing factor 1 OS=Mus musculus GN=Sf1 PE=1 SV=5[more]
SF01_HUMAN4.501e-1330.73Splicing factor 1 OS=Homo sapiens GN=SF1 PE=1 SV=4[more]
BBP_SCHPO5.878e-1337.14Branchpoint-bridging protein OS=Schizosaccharomyce... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAP8YG14FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY270964 ID=DY270964; Name=DY270964; organism=Citrus clementina; type=EST; length=1279bp
AACATTCACATCTGAGACCTTCACCAACGAACGCACGCGCGCAACACCTC
TCTCGACCCGTCGCTAGCCGTCACGAAAGACTCACAATCCATGGAGTCAA
CAGTTGAATCAAACCCCCAATATCAAACCCTAGATTTCAATCAAAACCCG
CCGTTACCGCAAGACACCCTAGATCACGATTCACAAAACCCGCCCAAAAC
CCTAGCTCCTCCCGATGCTCAAAATCCCCAGCCGGCTTCCGAAAACGGCC
ACGACAAAAACAATGAGAACAGCTGTAACAATAACAATGACGTCGCTGCA
GCCGATTACATTAAGCAGAAGCCGTTGCTTTCGGAAAATGGTCTGACCAA
CACTCATTCCGGCACCGATAAGGATCAGTCGGGTGGCGAGGAGGAGACCA
CAAGCAGACGACGACGTCGCAGCAGGTGGGACCCGCCGCCATCGGAATCA
GGCGGCACGGAAGGTAATGGCGACTCTGGAAGCGGGACCAGGAAGCGGAG
ATCGAGGTGGGCGGACGATGAGCCGAAGCCGGTGATTCAGTTGCCGGATT
TTATGAAGGACTTTACTGGAGGTATTGAGTTTGACCCGGAAATTCAAGCT
TTGAATAGTCGTTTGTTAGAAATTTCTAGAATGCTTCAGTCTGGTTTGCC
TTTAGATGATAGACCTGAGGGACAAAGGAGTCCTTCGCCCGAACCAATTT
ATGATAATATGGGAATTAAGATTAATACTAGAGAGTATCGTGCAAGAGAG
AGATTGAATAAGGAGAGACAGGAGATTATATCTCAGATTATTAAAAAAAT
CCGGCATTTAAGCCACCGGCAGATTATAGGCCCCCAAAGCTTCAAAAAAA
GCCTTTTATTTCGAATGAAAGATTACCCTGGGTTAAATTTTTATTGGTTT
GGATTATGGGGCCAAGAGGGAATACACAAAAAAAAAAGGGAAAAAGAGAC
GGGGGGGTTAAATTGTTTATCCCGGGTAAAAGGGTCCGTGGAAAAAGGGA
AGGGTTCCAACAAAAAAAGGGGATTTTAGCACCCAACACCCTCTAAAAAA
AGAAAAATTTAAATGTGTTTTTGGGGGGGGGGGCAAAAAAATCCGGGAAA
TCCCCTTTGGGAAGGGGCCCCGGTCCGGAGGGGGGGGAAAAAGTTGGTGG
CCCACCCCCTAAAAAAAGAGGTGGGTTTAAAAAGGAAAAAAAAGAAGGGG
GGGGGCCAATTTTTAGGGGGGGGAGCCTGTGTGCGGCCCTTTTTTTTTAA
AGGTGGGGGGGTACCAAATTATAAGGGGG
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