DY270986

Overview
NameDY270986
Unique NameDY270986
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1215
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14624 contig Ccv1_Contig14624:1..1215. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY270986 vs. ExPASy Swiss-Prot
Match: MFP_ORYSJ (Peroxisomal fatty acid beta-oxidation multifunctional protein OS=Oryza sativa subsp. japonica GN=MFP PE=1 SV=2)

HSP 1 Score: 290.812 bits (743), Expect = 1.088e-77
Identity = 163/296 (55.07%), Postives = 198/296 (66.89%), Query Frame = 3
Query:   66 APRVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGADC-------------------KKPIXXXXXXXXXXXXXXXXMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMPHHKHGLNVIEEGTVHEGYNGVLKGGPSFQGVSQG*TPSKRSCSVLFRPTRKPPRVP 896
            A RVTMEVG DGVA++T+ NPPVNAL   I+ GLK+K+ EA  RDDVKAIVLTG GG+F GGFDINVF +VH                       KKP                 MGCHARI+ P+ QLGLPELTLG+IPGFGGTQRLPRLVGL KAIEMML SK IT++EG + GL+DA+ + +EL+K+SRLWAL+IA  RKPWIRSL RTD+LGSLSEAR VL  AR QAKK A N+P H+  L+V+EEG +  G+ GVLK    F+ +    +P+ ++    F   R   +VP
Sbjct:    4 AIRVTMEVGADGVAVVTICNPPVNALHPIIIQGLKEKYAEAMDRDDVKAIVLTGAGGKFCGGFDINVFTEVHKTGNVSLMPDVSVELVSNLMEAGKKPSVAAIQGLALGGGLELTMGCHARISTPEAQLGLPELTLGIIPGFGGTQRLPRLVGLPKAIEMMLQSKFITAKEGKEGGLVDALCSPDELIKMSRLWALEIANYRKPWIRSLARTDRLGSLSEARSVLNSARQQAKKVAANLPQHQACLDVMEEGVLCGGHAGVLKEAKVFKELVL--SPTSKALVHAFFAQRLTTKVP 297          
BLAST of DY270986 vs. ExPASy Swiss-Prot
Match: MFPA_CUCSA (Glyoxysomal fatty acid beta-oxidation multifunctional protein MFP-a OS=Cucumis sativus PE=1 SV=1)

HSP 1 Score: 261.151 bits (666), Expect = 9.228e-69
Identity = 146/299 (48.83%), Postives = 179/299 (59.87%), Query Frame = 3
Query:   63 AAPRVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAD--------------------CKKPIXXXXXXXXXXXXXXXXMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMPHHKHGLNVIEEGTVHEGYNGVLKGGPSFQGVSQG*TPSKRSCSVLF--RPTRKPPRV 893
            A  R  MEVG DGVAIIT+INPPVN+L+  ++  L+D +E+A  RDDVKAIV+TG  G+FSGGFDI  F  + G                       +KP                 M CHARI+ P  QLGLPEL LG+IPGFGGTQRLPRLVGLSKA+EMML SK I  +E   LGL+DA+V  EEL+  +R WAL+I  RR+PW+ SLHRTDKL SL+EAR++  LAR QAKK  PN+ H    ++ +E G V     G+ K    FQG+    T  K    + F  R T K P V
Sbjct:    5 AKGRTVMEVGTDGVAIITIINPPVNSLSFDVLFSLRDSYEQALRRDDVKAIVVTGAKGKFSGGFDITAFGVLQGGKGEQPNVRNISIEMITDIFEAARKPAVAAIDGLALGGGLEVAMACHARISTPTAQLGLPELQLGIIPGFGGTQRLPRLVGLSKALEMMLTSKPIKGQEAHSLGLVDAIVPPEELINTARRWALEILERRRPWVHSLHRTDKLESLAEARKIFNLARAQAKKQYPNLKHTIACIDAVETGVVSGPRAGLWKEAEEFQGLLHSDT-CKSLIHIFFAQRSTTKVPGV 302          
BLAST of DY270986 vs. ExPASy Swiss-Prot
Match: MFPA_BRANA (Glyoxysomal fatty acid beta-oxidation multifunctional protein MFP-a OS=Brassica napus PE=2 SV=2)

HSP 1 Score: 249.21 bits (635), Expect = 3.629e-65
Identity = 137/260 (52.69%), Postives = 166/260 (63.85%), Query Frame = 3
Query:   78 TMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAD--------------------CKKPIXXXXXXXXXXXXXXXXMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMPHHKHGLNVIEEGTVHEGYNGVLK 797
            T+EVG DGVA+ITLINPPVN+L+  ++  LK  +EEA SR+DVKAIV+TG  G+FSGGFDI+ F ++                         KKP                 M CHARI+AP  QLGLPEL LGVIPGFGGTQRLPRLVGL+KA+EM+L SK + +EEG  LGLIDAVV   ELL  +R WALDIA RRKPW+ S+ +TDKL  L EARE+LK A+ Q ++ APNM H    L  +E G V     G+ K
Sbjct:   10 TIEVGADGVAVITLINPPVNSLSFDVLYSLKSNYEEALSRNDVKAIVVTGAKGKFSGGFDISGFGEIQKGTMKEPKVGYISIDILTDLLEAAKKPSVAAIDGLALGGGLELSMACHARISAPGAQLGLPELQLGVIPGFGGTQRLPRLVGLTKALEMILTSKPVKAEEGHSLGLIDAVVPPAELLNAARRWALDIAERRKPWVSSVLKTDKLPPLGEAREILKFAKDQTRRQAPNMKHPLMCLEAVEVGIVSGSRAGLEK 269          
BLAST of DY270986 vs. ExPASy Swiss-Prot
Match: ECHP_DANRE (Peroxisomal bifunctional enzyme OS=Danio rerio GN=ehhadh PE=2 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 1.068e-24
Identity = 68/182 (37.36%), Postives = 99/182 (54.40%), Query Frame = 3
Query:   84 EVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQ-KVHGADC----------KKPIXXXXXXXXXXXXXXXXMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWAL 596
            E+    VA+ITL NPPVNAL+  +   +    E A S   V A+V+ G  GRF GG DI  F   + G             +KP+                + CH RIA  K +LGLPE+TLG++P  GGTQRLPRL+G+  A+E++   + ++++E  KLG++D  VT +   +V+  +AL
Sbjct:    5 ELVKRSVALITLTNPPVNALSSAVRHAISKTMERALSDPKVTAVVICGENGRFCGGADIREFAGPLRGPPLVPLLDAIEAGEKPVVAAIEGVALGGGFELALVCHYRIAHYKARLGLPEVTLGILPAAGGTQRLPRLIGIPAALELITTGRHVSAQEALKLGMVDQ-VTEQNTCEVALEFAL 185          
BLAST of DY270986 vs. ExPASy Swiss-Prot
Match: ECHP_PONAB (Peroxisomal bifunctional enzyme OS=Pongo abelii GN=EHHADH PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 1.542e-23
Identity = 62/176 (35.23%), Postives = 100/176 (56.82%), Query Frame = 3
Query:   93 NDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKV--------HGAD----CKKPIXXXXXXXXXXXXXXXXMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSR 584
            ++ +A+I L NPPVNA++  ++  +K+  ++A     +KAIV+ G  G+FS G DI+ F           H  D     +KP+                +GCH RIA  + Q+GLPE+TLG++PG  GTQ LPRL+G+  A++++   + I ++E  KLG++D VV S+ + +  R
Sbjct:    8 HNALALIRLRNPPVNAISTALLRDIKEGLQKAVIDHTIKAIVICGAEGKFSAGADIHGFSAPRTFGFTLGHVVDEIQRNEKPVVAAIQGMAFGGGLELALGCHYRIAHSEAQVGLPEVTLGLLPGARGTQLLPRLIGVPAALDLITSGRHILADEALKLGILDKVVNSDPVEEAIR 183          
BLAST of DY270986 vs. ExPASy Swiss-Prot
Match: ECHP_HUMAN (Peroxisomal bifunctional enzyme OS=Homo sapiens GN=EHHADH PE=1 SV=3)

HSP 1 Score: 109.768 bits (273), Expect = 3.436e-23
Identity = 78/220 (35.45%), Postives = 120/220 (54.55%), Query Frame = 3
Query:   93 NDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKV--------HGAD----CKKPIXXXXXXXXXXXXXXXXMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTS---EELLK-VSRLWALDIAARR---KPWIRSLHRTDKLGSLSEAREVLKLAR 695
            ++ +A+I L NPPVNA++  ++  +K+  ++A     +KAIV+ G  G+FS G DI  F           H  D     +KP+                +GCH RIA  + Q+GLPE+TLG++PG  GTQ LPRL G+  A++++   + I ++E  KLG++D VV S   EE ++   R+    + +RR   KP I+SL   D +   SEA  +LK+ R
Sbjct:    8 HNALALIRLRNPPVNAISTTLLRDIKEGLQKAVIDHTIKAIVICGAEGKFSAGADIRGFSAPRTFGLTLGHVVDEIQRNEKPVVAAIQGMAFGGGLELALGCHYRIAHAEAQVGLPEVTLGLLPGARGTQLLPRLTGVPAALDLITSGRRILADEALKLGILDKVVNSDPVEEAIRFAQRVSDQPLESRRLCNKP-IQSLPNMDSI--FSEA--LLKMRR 222          
BLAST of DY270986 vs. ExPASy Swiss-Prot
Match: ECHP_RAT (Peroxisomal bifunctional enzyme OS=Rattus norvegicus GN=Ehhadh PE=1 SV=2)

HSP 1 Score: 107.842 bits (268), Expect = 1.306e-22
Identity = 62/175 (35.43%), Postives = 99/175 (56.57%), Query Frame = 3
Query:  102 VAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGADC-----------KKPIXXXXXXXXXXXXXXXXMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTS---EELLKVSR 584
            +A+I L NPPVNA++  ++  +++  ++A S   VKAIV+ G  G F  G DI+ F                   +KP+                +GCH RIA  K ++GLPE+TLG++PG  GTQ LPR+VG+  A++++   K ++++E  +LG++DAVV S   EE +K ++
Sbjct:   11 LAMIRLCNPPVNAVSPTVIREVRNGLQKAGSDHTVKAIVICGANGNFCAGADIHGFSAFTPGLALGSLVDEIQRYQKPVLAAIQGVALGGGLELALGCHYRIANAKARVGLPEVTLGILPGARGTQLLPRVVGVPVALDLITSGKYLSADEALRLGILDAVVKSDPVEEAIKFAQ 185          
BLAST of DY270986 vs. ExPASy Swiss-Prot
Match: FADB_BACSU (Probable enoyl-CoA hydratase OS=Bacillus subtilis GN=fadB PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 2.909e-22
Identity = 67/197 (34.01%), Postives = 98/197 (49.75%), Query Frame = 3
Query:  102 VAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGADCK------------------KPIXXXXXXXXXXXXXXXXMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSE-ELLKVSRLWALDIAARRKPWIRSL 635
            VA++T+ NPP NAL+  I+  L    ++  +   V++I++ G G  FS G DI  F  + G +                    KPI                M CH RIAA   +LGLPEL LG+IPGF GTQRLPR VG +KA+E++   + I+ +E   LGL+      E E+++ ++  A   A +    + SL
Sbjct:   12 VAVLTIHNPPANALSSRILEELSSCLDQCETDAGVRSIIIHGEGRFFSAGADIKEFTSLKGNEDSSLLAERGQQLMERIESFPKPIIAAIHGAALGGGLELAMACHIRIAAEDAKLGLPELNLGIIPGFAGTQRLPRYVGTAKALELIGSGEPISGKEALDLGLVSIGAKDEAEVIEKAKALAAKFAEKSPQTLASL 208          
BLAST of DY270986 vs. ExPASy Swiss-Prot
Match: FADJ_ECOL6 (Fatty acid oxidation complex subunit alpha OS=Escherichia coli O6 GN=fadJ PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 1.105e-21
Identity = 79/263 (30.04%), Postives = 124/263 (47.15%), Query Frame = 3
Query:   66 APRVTMEVGNDGVAIITLINP--PVNALAIPIVAGLKDKFEEATSRDDVKAIV-LTGNGGRFSGGFDINVFQKVHGADCKK-----------------------PIXXXXXXXXXXXXXXXXMGCHARIAA--PKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKL--GSLSEAREVLKLARLQAKKTAPNMPHHKHGLNVIEEG 764
            A   T+ V  D +A+IT+  P   +N L     + ++   ++     D++ +V ++     F  G DIN+      A+CK                        P+                + CH R+    PKT LGLPE+ LG++PG GGTQRLPRL+G+S A+EM+L  K + +++  KLGL+D VV    LL+     A+++A + +P  R L   +++  G L  A     + +   +KT  N P  K  L+VIE G
Sbjct:    4 ASAFTLNVRLDNIAVITIDVPGEKMNTLKAEFASQVRAIIKQLRENKDLRGVVFISAKPDNFIAGADINMI-----ANCKTAQEAEALARQGQQLMAEIHALPVPVIAAIHGACLGGGLELALACHGRVCTDDPKTVLGLPEVQLGLLPGSGGTQRLPRLIGVSTALEMILTGKQLRAKQALKLGLVDDVVPHSILLEA----AVELAKQDRPSSRPLPVRERILAGPLGRALLFKMVGKKTEQKTQGNYPATKRILDVIETG 257          
BLAST of DY270986 vs. ExPASy Swiss-Prot
Match: ECHP_CAVPO (Peroxisomal bifunctional enzyme OS=Cavia porcellus GN=EHHADH PE=2 SV=2)

HSP 1 Score: 104.375 bits (259), Expect = 1.444e-21
Identity = 60/178 (33.71%), Postives = 96/178 (53.93%), Query Frame = 3
Query:  102 VAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGADC--------------KKPIXXXXXXXXXXXXXXXXMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTS---EELLKVSR 584
            +A+I L NPPVNA++  ++ G+K+  ++A S   +K IV++G    F  G DI+ F                      +KP+                +GCH RIA  + ++G PE+TLG++PG  GTQ LPRL+G+  A++++   + IT+ E  KLG++D VV S   EE +K ++
Sbjct:   11 LALIRLRNPPVNAISPAVIHGIKEGLQKAMSDYTIKGIVISGANNIFCAGADIHGFSAPLSFGTGSGLGPIVDEMQRYEKPVVAAIQGMALGGGLELSLGCHYRIAHAEARIGFPEVTLGILPGARGTQLLPRLIGVPAALDLITSGRHITAGEALKLGILDKVVNSAPVEEAIKFAQ 188          
The following BLAST results are available for this feature:
BLAST of DY270986 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 215
Match NameE-valueIdentityDescription
MFP_ORYSJ1.088e-7755.07Peroxisomal fatty acid beta-oxidation multifunctio... [more]
MFPA_CUCSA9.228e-6948.83Glyoxysomal fatty acid beta-oxidation multifunctio... [more]
MFPA_BRANA3.629e-6552.69Glyoxysomal fatty acid beta-oxidation multifunctio... [more]
ECHP_DANRE1.068e-2437.36Peroxisomal bifunctional enzyme OS=Danio rerio GN=... [more]
ECHP_PONAB1.542e-2335.23Peroxisomal bifunctional enzyme OS=Pongo abelii GN... [more]
ECHP_HUMAN3.436e-2335.45Peroxisomal bifunctional enzyme OS=Homo sapiens GN... [more]
ECHP_RAT1.306e-2235.43Peroxisomal bifunctional enzyme OS=Rattus norvegic... [more]
FADB_BACSU2.909e-2234.01Probable enoyl-CoA hydratase OS=Bacillus subtilis ... [more]
FADJ_ECOL61.105e-2130.04Fatty acid oxidation complex subunit alpha OS=Esch... [more]
ECHP_CAVPO1.444e-2133.71Peroxisomal bifunctional enzyme OS=Cavia porcellus... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP8YH20FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY270986 ID=DY270986; Name=DY270986; organism=Citrus clementina; type=EST; length=1215bp
TTCGGATTGATATTTAAATCTCCACTAAAAGAAATAATTGATAATAATAA
CAGTAAGCCATGGCAGCACCGCGAGTGACGATGGAAGTCGGAAACGACGG
CGTTGCGATCATCACTTTGATTAATCCTCCCGTGAACGCCTTAGCTATTC
CAATTGTTGCCGGATTGAAGGACAAGTTTGAGGAGGCCACGAGCCGAGAC
GACGTTAAGGCTATTGTTCTGACTGGCAATGGTGGAAGGTTTTCTGGCGG
TTTCGACATAAATGTTTTTCAGAAGGTTCACGGGGCTGATTGCAAGAAGC
CCATTGTTGCAGCTGTGGAGGGGTTAGCCCTTGGAGGTGGCTTAGAATTG
GCAATGGGATGCCATGCACGTATTGCTGCTCCAAAGACTCAACTTGGCTT
GCCTGAGCTGACACTAGGGGTAATTCCAGGTTTTGGAGGCACACAACGTC
TACCAAGGCTGGTGGGCCTCTCAAAGGCTATTGAAATGATGCTGTTATCT
AAATCAATCACGTCTGAGGAGGGCTGGAAGCTGGGTCTAATTGATGCTGT
TGTGACTTCTGAAGAGTTGCTGAAAGTATCTCGACTCTGGGCTTTAGACA
TTGCAGCAAGGCGCAAACCATGGATACGTTCCCTTCACAGGACAGACAAA
CTTGGTTCTCTTTCTGAAGCAAGAGAGGTGTTGAAACTTGCTAGACTACA
AGCCAAGAAGACTGCCCCAAATATGCCTCACCACAAGCATGGCCTGAATG
TGATTGAGGAGGGTACCGTTCATGAAGGATATAATGGCGTTTTGAAAGGA
GGCCCAAGTTTTCAGGGAGTTAGTCAAGGTTAAACCCCTTCCAAAAGGTC
TTGTTCTGTCCTTTTTCGCCCAACCCGGAAACCTCCAAGGGTGCCCCATA
TGTAAACTGAAAATTGGTCTCCCAAACCAATGGGGTGTAAAAAAAAACTT
GCCTGGGACTTAAGGCCGCGTCCTAGGGGGTTCTGGGCCATACCATTTCC
GCACCAAACCTTGACAATAATCTAATGTTTTCTCCTAATGGTAATTTTTT
CTTTAATAAATCTTTCTACCAATGAGTAAAACAAAATTAAAGCACATCAA
CAGTTTCCCGAGCCCTTGTCTACACCAATAACAAAATCATCAAACCGCAT
CTAAATACCTAACAACCAATCCCTCACCATATAATATTTTTTAAACAACT
GAGACTACCATCTAT
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