DY271006

Overview
NameDY271006
Unique NameDY271006
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1283
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig3805 contig Ccv1_Contig3805:1..1283. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY271006 vs. ExPASy Swiss-Prot
Match: PPL1_ARATH (PsbP-like protein 1, chloroplastic OS=Arabidopsis thaliana GN=PPL1 PE=1 SV=1)

HSP 1 Score: 274.633 bits (701), Expect = 7.420e-73
Identity = 129/190 (67.89%), Postives = 161/190 (84.74%), Query Frame = 3
Query:   57 GVLPAVCRRGISLIVKAEHASMASSANSLDKCGRRQMIAVGVIAPWVSLVNQTPPSFAAESKKGFLSVTDKKDGYSFVYPFGWQEVIIEGQDKVFKDVIEPLESVSVNLIPTGKQDIRDFGPPQEVAETLIKKFLAPPTQKTKIIAASENDVDGKAYYAFEFTAQAPNYIRHALGVVTVGHGKFYTLTTG 626
            GV+P+  ++G+S +VKAEH S +SS++  DKC RR ++  GV+APW+SL+++ P SFAAESKKGFL+V+D KD Y+F+YPFGWQEV+IEGQDKV+KDVIEPLESVSVNL+PT KQ I++FGPP+++AETLIKK LAPP QKT +I ASE+DVDGK YY FEFT QA NY RHALG +TV +G FYTLTTG
Sbjct:   18 GVIPS-SKKGLSFLVKAEHHSSSSSSHLQDKCQRRLIVTFGVVAPWISLLSRAPLSFAAESKKGFLAVSDNKDAYAFLYPFGWQEVVIEGQDKVYKDVIEPLESVSVNLVPTSKQTIKEFGPPKQIAETLIKKVLAPPNQKTTLIDASEHDVDGKTYYQFEFTVQARNYTRHALGTITVFNGNFYTLTTG 206          

HSP 2 Score: 21.1718 bits (43), Expect = 7.420e-73
Identity = 11/25 (44.00%), Postives = 18/25 (72.00%), Query Frame = 1
Query:  625 GANERRWGEDER*IGNSLLNPFKIS 699
            GANERRW E  +   +++++ FKI+
Sbjct:  206 GANERRW-EKMKDRLHTVVDSFKIT 229          
BLAST of DY271006 vs. ExPASy Swiss-Prot
Match: PPL2_ARATH (PsbP-like protein 2, chloroplastic OS=Arabidopsis thaliana GN=PPL2 PE=1 SV=2)

HSP 1 Score: 103.99 bits (258), Expect = 8.361e-22
Identity = 63/179 (35.20%), Postives = 87/179 (48.60%), Query Frame = 3
Query:  102 KAEHASMASSANSLDKCGRRQ-MIAVGVIAPWVSLVNQTPPS---FAAESKKGFLSVTDKKDGYSFVYPFGWQEVIIEGQDKVFKDVIEPLESVSVNLIPTGKQDIRDFGPPQEVAETLIKKFLAPPTQKTKIIAASENDVDGKAYYAFEFTAQAPNYIRHALGVVTVGHGKFYTLTTG 626
            KA+ +       S +   RRQ ++ VG      +LV  + P+    A E  K +    D++DGYS+ YP  W+E      D  FKD    L++V V  IPT K DI + GP +EV   L+K   A P Q   I    E   DGK YY FE+  + P Y   +   V VG+ ++YTL  G
Sbjct:   41 KADSSESTYQKGSGNNWKRRQALVGVG------TLVATSIPATLLLAEEIPKSYSPFVDREDGYSYYYPSDWREFDFRAHDSAFKDRYLQLQNVRVRFIPTEKNDIHEVGPMEEVVYDLVKHKFAAPNQVATIYDMKERVEDGKNYYTFEYGLRTPIYATTSFATVAVGNNRYYTLIVG 213          

HSP 2 Score: 20.7866 bits (42), Expect = 8.361e-22
Identity = 7/7 (100.00%), Postives = 7/7 (100.00%), Query Frame = 1
Query:  625 GANERRW 645
            GANERRW
Sbjct:  213 GANERRW 219          
The following BLAST results are available for this feature:
BLAST of DY271006 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
PPL1_ARATH7.420e-7367.89PsbP-like protein 1, chloroplastic OS=Arabidopsis ... [more]
PPL2_ARATH8.361e-2235.20PsbP-like protein 2, chloroplastic OS=Arabidopsis ... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAP8YI17FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY271006 ID=DY271006; Name=DY271006; organism=Citrus clementina; type=EST; length=1283bp
TTCATCAAACGTCTTTTCTCAACTCTCTTCCTCAGCTGGGAGTACAAAAG
TACGGTGGTGTTTTGCCTGCAGTATGTAGAAGAGGCATTTCGCTTATTGT
AAAAGCTGAACATGCATCAATGGCTTCCTCTGCAAATTCTCTAGATAAAT
GTGGAAGACGCCAAATGATTGCTGTTGGAGTCATTGCCCCTTGGGTTTCT
CTTGTGAACCAAACTCCCCCCTCATTTGCTGCAGAAAGTAAAAAGGGATT
TCTGTCAGTCACAGACAAGAAGGACGGCTATTCATTTGTCTATCCATTCG
GATGGCAGGAAGTAATCATTGAAGGTCAAGATAAGGTATTCAAAGACGTC
ATTGAGCCATTAGAGAGTGTCAGTGTAAATCTAATCCCAACCGGTAAACA
GGATATTCGAGACTTTGGCCCTCCCCAAGAGGTTGCAGAGACTTTAATCA
AAAAGTTTTTGGCCCCTCCTACGCAGAAAACAAAGATAATTGCTGCTTCA
GAGAATGATGTTGATGGGAAAGCTTATTACGCATTTGAGTTCACTGCCCA
AGCGCCCAACTACATCCGTCATGCTCTTGGGGTAGTCACTGTTGGGCATG
GTAAGTTCTACACCTTGACAACCGGGGGCCAATGAGAGAAGATGGGGGGA
AGATGAAAGATAGATTGGAAACAGTCTTTTGAATCCTTTTAAAATTTCCA
ATGTTTGATCTGGTTTGTCCTACTTTTACTTACTAAAGAAGGGAAATCAA
GCTTCAAACTGGCAATGCACTATTGTGGCTTTTTTCATAGATTTAAAGGT
TATTTTGTTCTTTTCAGAAGGGTTCTTGGTGTATTCAGAAGGCGGGTTTA
TATCATGGCACATTGTCTTTTCCTATGCAAATATGCATTTAAGCTATTAT
TTTAAACTCTTGCTTTTTTACCTGAAACTAATCTATACTTCAATGACTCT
ACATCGCCGTGATGATACTTGCGTGATATTTCTTGTCCTTAGATATAGGA
TGTAATTTCCAAATTGGCTTGATATACCCACAAATTTTATTTTGTCCTTA
GACCGTCTCCATCTCATATACATTCTTTTCGCCGATCATTGTGGCTTCCA
CCGTGTCATTTGTCTGCCATTTTCCTTGCATGATATACTTTCGTAAGGTC
TATGCACGCCACCTGGGTAGTGAACTGCGATGAGGTATAAATCTTTAATG
GTTGATCTACTATTGCTTTCACAGTCATATTTTACTGTTACTGAAATAGA
TCTAGATTGGATGTGTAGGTTGGGTTGCATGTG
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