DY271007

Overview
NameDY271007
Unique NameDY271007
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1258
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY271007_ssr737 microsatellite DY271007_ssr737:737..748. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of DY271007 vs. ExPASy Swiss-Prot
Match: PPA1_SOLLC (Acid phosphatase 1 OS=Solanum lycopersicum GN=APS1 PE=2 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 3.425e-51
Identity = 81/184 (44.02%), Postives = 117/184 (63.59%), Query Frame = 2
Query:  221 LSCLSWRLGVETNNVIGWATVPEKCADYVGHYMLGQQYRLDSEVVANEAILHAQSLTLAGDGKDIWVFDIDETSLCNLPYYAKNGFGVKPYNPTMFNEWVNTGKAXXXXXXXXXXXXXXXXGIKIVFLTGRPEDQRNVTEANLKHAGFNTWEKLILKGSSHSGETAVVYKSSERKKLEMKGYRI 772
            L C +WR  VETNN+  W T+PE+CADYV  YM+G  Y+++ + V++EA  +A+S+ L  DG+D+W+FD+DET L NLPYY+ + +G++ ++   F++WV  G A                G K+  LTGR E  R+VT  NL +AGF+ W KLIL+GS   G+TA  YKS  R  +  +G+RI
Sbjct:   41 LKCTTWRFVVETNNLSPWKTIPEECADYVKEYMVGPGYKMEIDRVSDEAGEYAKSVDLGDDGRDVWIFDVDETLLSNLPYYSDHRYGLEVFDDVEFDKWVENGTAPALGSSLKLYQEVLKLGFKVFLLTGRSERHRSVTVENLMNAGFHDWHKLILRGSDDHGKTATTYKSERRNAMVEEGFRI 224          

HSP 2 Score: 47.3654 bits (111), Expect = 3.425e-51
Identity = 18/35 (51.43%), Postives = 27/35 (77.14%), Query Frame = 3
Query:  759 KGTEFIGNIGESWNDLLGTNPGNRTFQLPDPMYYI 863
            +G   +GN G+ W+DLLG++   R+F+LP+PMYYI
Sbjct:  220 EGFRIVGNSGDQWSDLLGSSMSYRSFKLPNPMYYI 254          
BLAST of DY271007 vs. ExPASy Swiss-Prot
Match: VSPA_SOYBN (Stem 28 kDa glycoprotein OS=Glycine max GN=VSPA PE=2 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 1.451e-40
Identity = 85/187 (45.45%), Postives = 118/187 (63.10%), Query Frame = 2
Query:  215 PGLSCLSWRLGVETNNVIGWATVPEKCADYVGHYMLGQQYRLDSEVVANEAILHAQSLTLAGDGKDIWVFDIDETSLCNLPYYAKNGFGVKPYNPTMFNEWVNTGKAXXXXXXXXXXXXXXXXGIKIVFLTGRPEDQRNVTEANLKHAGFNTWEKLILKG-SSHSGETAVVYKSSERKKLEMKGYRI 772
            P + C SWRL VE +N+ G+ T+PE+C +    Y+ G+QYR DS+ V  +A  +A+ L +    KD +VF ID T L N+PYY K+G+GV+ +N T+++EWVN G A                G KI+FL+GR  D++ VTEANLK AG++TWEKLILK     S   AV YK++ R+KL  +GY I
Sbjct:   38 PEVKCASWRLAVEAHNIFGFETIPEECVEATKEYIHGEQYRSDSKTVNQQAYFYARDLEV--HPKDTFVFSIDGTVLSNIPYYKKHGYGVEKFNSTLYDEWVNKGNAPALPETLKNYNKLVSLGFKIIFLSGRTLDKQAVTEANLKKAGYHTWEKLILKDPQDPSTPNAVSYKTAAREKLIRQGYNI 222          
BLAST of DY271007 vs. ExPASy Swiss-Prot
Match: S25K_SOYBN (Stem 31 kDa glycoprotein (Fragment) OS=Glycine max GN=VSP25 PE=2 SV=2)

HSP 1 Score: 167.548 bits (423), Expect = 1.451e-40
Identity = 85/187 (45.45%), Postives = 118/187 (63.10%), Query Frame = 2
Query:  215 PGLSCLSWRLGVETNNVIGWATVPEKCADYVGHYMLGQQYRLDSEVVANEAILHAQSLTLAGDGKDIWVFDIDETSLCNLPYYAKNGFGVKPYNPTMFNEWVNTGKAXXXXXXXXXXXXXXXXGIKIVFLTGRPEDQRNVTEANLKHAGFNTWEKLILKG-SSHSGETAVVYKSSERKKLEMKGYRI 772
            P + C SWRL VE +N+ G+ T+PE+C +    Y+ G+QYR DS+ V  +A  +A+ L +    KD +VF ID T L N+PYY K+G+GV+ +N T+++EWVN G A                G KI+FL+GR  D++ VTEANLK AG++TWEKLILK     S   AV YK++ R+KL  +GY I
Sbjct:   35 PEVKCASWRLAVEAHNIFGFETIPEECVEATKEYIHGEQYRSDSKTVNQQAYFYARDLEV--HPKDTFVFSIDGTVLSNIPYYKKHGYGVEKFNSTLYDEWVNKGNAPALPETLKNYNKLVSLGFKIIFLSGRTLDKQAVTEANLKKAGYHTWEKLILKDPQDPSTPNAVSYKTAAREKLIRQGYNI 219          
BLAST of DY271007 vs. ExPASy Swiss-Prot
Match: VSP2_ARATH (Vegetative storage protein 2 OS=Arabidopsis thaliana GN=VSP2 PE=1 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.997e-38
Identity = 75/185 (40.54%), Postives = 106/185 (57.30%), Query Frame = 2
Query:  224 SCLSWRLGVETNNVIGWATVPEKCADYVGHYML-GQQYRLDSEVVANEAILHAQSLTLAGDGKDIWVFDIDETSLCNLPYYAKNGFGVKPYNPTMFNEWVNTG-KAXXXXXXXXXXXXXXXXGIKIVFLTGRPEDQRNVTEANLKHAGFNTWEKLILKGSSHSGETAVVYKSSERKKLEMKGYRI 772
            +C SW LGVET+N+I + TVP  C DYV  Y++  +QY+ DS+ V  EA  +A+ L L  D  ++W+FD+D+T L ++PYYAK G+G +  +P  +  W+ TG                   GI+ + L+ R +  +NVT  NL+ AG   W+ LILK +  S    VVYKS  RK L  KGY I
Sbjct:   51 NCRSWHLGVETSNIIDFDTVPANCKDYVEDYLITSKQYQYDSKTVCKEAYFYAKGLALKNDTVNVWIFDLDDTLLSSIPYYAKYGYGTEKTDPGAYWLWLGTGASTPGLPEALHLYQNIIELGIEPIILSDRWKLWKNVTLDNLEAAGVTYWKHLILKPNG-SNLRQVVYKSKVRKSLVKKGYNI 234          

HSP 2 Score: 44.669 bits (104), Expect = 1.997e-38
Identity = 18/35 (51.43%), Postives = 25/35 (71.43%), Query Frame = 3
Query:  759 KGTEFIGNIGESWNDLLGTNPGNRTFQLPDPMYYI 863
            KG   +GNIG+ W DL+   PG R F+LP+P+YY+
Sbjct:  230 KGYNIVGNIGDQWADLVEDTPG-RVFKLPNPLYYV 263          
BLAST of DY271007 vs. ExPASy Swiss-Prot
Match: VSPB_SOYBN (Stem 31 kDa glycoprotein OS=Glycine max GN=VSPB PE=2 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 1.660e-36
Identity = 82/193 (42.49%), Postives = 118/193 (61.14%), Query Frame = 2
Query:  194 GSRNNDVPGLSCLSWRLGVETNNVIGWATVPEKCADYVGHYMLGQQYRLDSEVVANEAILHAQSLTLAGDGKDIWVFDIDETSLCNLPYYAKNGFGVKPYNPTMFNEWVNTGKAXXXXXXXXXXXXXXXXGIKIVFLTGRPEDQRNVTEANLKHAGFNTWEKLILKGSSHSGETAVVYKSSERKKLEMKGYRI 772
            G R+++V    C S+RL VE +N+  + T+PE+C +    Y+ G+Q+R DS+ V  +A  +A    +  +  DI++F ID T L N+PYY K+G+GV+ +N T+++EWVN G A                G KIVFL+GR  D+  VTEANLK AGF+TWE+LILK        A+ YKS+ R+ L  +GYRI
Sbjct:   35 GERSSEV---KCASFRLAVEAHNIRAFKTIPEECVEPTKDYINGEQFRSDSKTVNQQAFFYASEREVHHN--DIFIFGIDNTVLSNIPYYEKHGYGVEEFNETLYDEWVNKGDAPALPETLKNYNKLLSLGFKIVFLSGRYLDKMAVTEANLKKAGFHTWEQLILKDPHLITPNALSYKSAMRENLLRQGYRI 222          
BLAST of DY271007 vs. ExPASy Swiss-Prot
Match: VSP1_ARATH (Vegetative storage protein 1 OS=Arabidopsis thaliana GN=VSP1 PE=2 SV=2)

HSP 1 Score: 129.028 bits (323), Expect = 2.331e-36
Identity = 71/185 (38.38%), Postives = 103/185 (55.68%), Query Frame = 2
Query:  224 SCLSWRLGVETNNVIGWATVPEKCADYVGHYML-GQQYRLDSEVVANEAILHAQSLTLAGDGKDIWVFDIDETSLCNLPYYAKNGFGVKPYNPTMFNEWVNTGKA-XXXXXXXXXXXXXXXXGIKIVFLTGRPEDQRNVTEANLKHAGFNTWEKLILKGSSHSGETAVVYKSSERKKLEMKGYRI 772
            +C SW LGVET+N+I + TVP  C  YV  Y++  +QY+ DS+ V  EA  +A+ L L  D  ++W+FD+D+T L ++PYYAK G+G +   P  +  W+ +G++                 GI+ + ++ R +    VT  NLK  G   W+ LILK +  S  T VVYKS  R  L  KGY I
Sbjct:   56 NCRSWHLGVETSNIINFDTVPANCKAYVEDYLITSKQYQYDSKTVNKEAYFYAKGLALKNDTVNVWIFDLDDTLLSSIPYYAKYGYGTENTAPGAYWSWLESGESTPGLPETLHLYENLLELGIEPIIISDRWKKLSEVTVENLKAVGVTKWKHLILKPNG-SKLTQVVYKSKVRNSLVKKGYNI 239          

HSP 2 Score: 44.669 bits (104), Expect = 2.331e-36
Identity = 18/35 (51.43%), Postives = 25/35 (71.43%), Query Frame = 3
Query:  759 KGTEFIGNIGESWNDLLGTNPGNRTFQLPDPMYYI 863
            KG   +GNIG+ W DL+   PG R F+LP+P+YY+
Sbjct:  235 KGYNIVGNIGDQWADLVEDTPG-RVFKLPNPLYYV 268          
The following BLAST results are available for this feature:
BLAST of DY271007 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
PPA1_SOLLC3.425e-5144.02Acid phosphatase 1 OS=Solanum lycopersicum GN=APS1... [more]
VSPA_SOYBN1.451e-4045.45Stem 28 kDa glycoprotein OS=Glycine max GN=VSPA PE... [more]
S25K_SOYBN1.451e-4045.45Stem 31 kDa glycoprotein (Fragment) OS=Glycine max... [more]
VSP2_ARATH1.997e-3840.54Vegetative storage protein 2 OS=Arabidopsis thalia... [more]
VSPB_SOYBN1.660e-3642.49Stem 31 kDa glycoprotein OS=Glycine max GN=VSPB PE... [more]
VSP1_ARATH2.331e-3638.38Vegetative storage protein 1 OS=Arabidopsis thalia... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAP8YI18FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY271007 ID=DY271007; Name=DY271007; organism=Citrus clementina; type=EST; length=1258bp
CAATATTACAGTTGTAATGAGCATGGGAGGGGTGTCACTGCCATTATTAT
TCTTTTTTCTGGCTACCATATCAGCAACATCCCATGGATTTAGCATGGAC
ATCCGCCATCTTTTTCTGGCTACCATACCAGCAACATCCCATGGATTTAG
CATGGACATCCCCCATCAGATTCATCTTCTCCGACCGAAAGCCGGTTCCC
GGAACAACGATGTGCCCGGCTTGTCCTGCCTGAGTTGGCGACTCGGAGTG
GAAACTAATAACGTTATAGGATGGGCGACTGTTCCCGAAAAATGTGCAGA
CTACGTGGGGCATTACATGTTAGGCCAGCAGTACCGCCTGGACTCTGAAG
TGGTTGCTAATGAGGCCATTCTCCATGCTCAGAGCCTCACGCTTGCTGGC
GACGGCAAGGACATTTGGGTTTTCGACATAGATGAAACCTCGCTATGTAA
TTTGCCATATTATGCTAAGAATGGATTCGGGGTGAAGCCGTACAACCCTA
CTATGTTTAATGAATGGGTTAACACCGGAAAAGCACCACCGCTGCCAGAG
AGCCTTAAGCTTTACAAAAAATTATTATTGCTTGGAATTAAGATTGTATT
CCTCACGGGAAGACCAGAAGATCAGAGAAATGTTACAGAAGCTAATTTAA
AGCATGCTGGATTCAACACTTGGGAGAAACTCATCCTCAAGGGATCATCT
CATTCAGGAGAAACAGCAGTGGTGTACAAATCAAGTGAAAGAAAGAAACT
TGAGATGAAAGGGTACAGAATTTATTGGAAACATAGGTGAATCATGGAAC
GATCTCCTGGGCACCAACCCCGGCAATCGGACGTTTCAGCTGCCTGACCC
AATGTATTACATTGGCTAATTAAATAAAAAATGTTACTTTGGGATTTTTA
AAAAAAAATCAAAAGGGCCTTCCTTTGTGCACCAAAATTTCTTTAATTTT
TAAGCCTGTTCGATCCATTTGTACTGGCATTAACCAATTTAAAAAATTAG
GATTTTTCAAAAAAAAAAAAAAAAAAAAAAAAACCCCCCCTTTTTTTTTA
TAAAAATTTGGGGATTTATAAAAAAAAAACTTTTCCTAATTTAATTTTTT
TTGCAAACCCAAACACGGGCCCAAAAATAATCACAAAAAAAAAAAAATAT
TTATATTTTCCCCCCCCCCACCCTCGAAAATCCCCCCCCACTAAAATTGG
AGTTTCATATAAAAAAATATGGGGGCCCCTATAAGAACGTTTTTTCTTTT
TCCGTGGG
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