DY271071

Overview
NameDY271071
Unique NameDY271071
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1075
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY271071_ssr479 microsatellite DY271071_ssr479:479..496. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
[Close]
BLAST of DY271071 vs. ExPASy Swiss-Prot
Match: UPL5_ARATH (E3 ubiquitin-protein ligase UPL5 OS=Arabidopsis thaliana GN=UPL5 PE=2 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 2.150e-26
Identity = 60/107 (56.07%), Postives = 77/107 (71.96%), Query Frame = 1 
Query:  505 LQFFIRMMSEGKTMVIQADSNDTVKSIHERIQAMTGIPLIEQRLIYRGKQLQWEQSLAECCIQNDAGLQLVGRMRSTGHPQAWQVIDDMVSLICRLCKGEKPPHSLN 825
            LQ F+RMMS GKT+VI A+  DTV+ +H+RI+  T IP +EQR+IY+GKQLQ E SL    I+ DA LQLV RM+ST HP AWQ IDD++  I R+ KGE    ++N
Sbjct:   95 LQIFVRMMSGGKTIVIHAEKYDTVEKLHQRIEWKTKIPALEQRVIYKGKQLQRENSLTYYSIEQDASLQLVARMQSTEHPVAWQTIDDIMYTISRMYKGENLQSNIN 201
The following BLAST results are available for this feature:
BLAST of DY271071 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
UPL5_ARATH2.150e-2656.07E3 ubiquitin-protein ligase UPL5 OS=Arabidopsis th... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAP8YL22FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY271071 ID=DY271071; Name=DY271071; organism=Citrus clementina; type=EST; length=1075bp
CCCTCAAATTTACTATATAAACAAAGACTGATACAGACTCACTGACCGAG
CCAAAAAAAAGAAAAAATAAAAATGAAAACTGCTTTACTACTTATTAGCT
GCTAGGGTTCTTGTTTTTCTAATTTCTATTTTTGGAGTTTTCAATTTAAT
AGTTATCTTCTCCTTCAGCTGCTGCCTCGGCATTTAACGATCACATGCTC
TTACCCCCACCGTAAGCGGCGGGGGCCCCACTCTTCAATGTCTCCTGTTG
AATCGTTTGATCACTCTCACTTCTCCGTTCACTCGCGTCCGAAACGTAAG
TTGGACGATTTTGCCCCTAACTTAGACGGCGACGATGACGACGGCGCAGA
AACATCCGACCTTGTTTCTGTAAGAATGCGGAAAGACGAACCTGACGCCG
TCCACCACCAGCAGTCGTCAGACTTGATGACAAAAAACGACGCCGTTCTC
TCAGAAATTACTCCTCCTGCCGCTGCCGCTCCTCCTCCTCCTCCTCGGCC
AAGGCTCCAGTTTTTTATACGCATGATGTCTGAGGGGAAGACGATGGTCA
TCCAAGCCGACTCGAACGACACCGTCAAATCAATCCATGAAAGAATCCAA
GCGATGACGGGGATACCGTTGATCGAGCAACGGTTAATTTACCGGGGGAA
GCAGTTACAGTGGGAACAGTCCTTAGCTGAGTGTTGCATCCAAAACGACG
CCGGCCTGCAACTGGTTGGCCGCATGCGAAGCACGGGACATCCTCAAGCC
TGGCAAGTCATTGACGACATGGTTTCCCTTATTTGCCGCTTATGCAAAGG
TGAAAAGCCACCTCATTCTTTAAACACATCCAAATCAGAAATGAATGGAT
TTTTTTACCATGACTCCCAAAAAAAAAAATTGAAACCTGAACTTGCACCT
TGGACAAATCCAAATTTCCAAGGTCATCATCGCCCCCCGCTGGTTTGGGG
TAATGCTCTAACATTTCCTCCCCCCCCGGGGAAAACAAAAAAGGCCGCCG
AAAAATTTTAATTTAAAAAATTTTTTGTAAAACTCACAAAAAAAACCTCT
TTAACCAAAGGCCCTTTTCGAGGCC
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