DY271096

Overview
NameDY271096
Unique NameDY271096
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length993
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig3831 contig Ccv1_Contig3831:1..993. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of DY271096 vs. ExPASy Swiss-Prot
Match: GSTU6_ORYSJ (Probable glutathione S-transferase GSTU6 OS=Oryza sativa subsp. japonica GN=GSTU6 PE=2 SV=2)

HSP 1 Score: 88.9669 bits (219), Expect = 4.731e-17
Identity = 41/89 (46.07%), Postives = 55/89 (61.80%), Query Frame = 2 
Query:  626 EAKEAAIEQLIEGLVLLEDAFVKCSKGKPFFGESQIGFLDIAFGCYLGWVRVTEKMIEVKLLDEVKTPGLFQWAERFCAEAPVKNVMPE 892
            E + AA+ Q +  L  LE AF +CSKGKPFFG   +GF+D+  G YLGW    +K+I  +L+D  +TP L  W ERF A    K V+P+
Sbjct:  127 EERAAAVAQAVAALETLEGAFGECSKGKPFFGGDGVGFVDVVLGGYLGWFTAIDKLIGRRLIDPARTPALAAWEERFRATDAAKGVVPD 215
[Close]
BLAST of DY271096 vs. ExPASy Swiss-Prot
Match: GSTX2_MAIZE (Probable glutathione S-transferase BZ2 OS=Zea mays GN=BZ2 PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 3.173e-13
Identity = 42/111 (37.84%), Postives = 63/111 (56.76%), Query Frame = 2 
Query:  587 FPALKSIGSADGAEAKEAAIEQLIEGLVLLEDAFVKCSKGKPFF--GESQIGFLDIAFGCYLGWVRVTEKMIEVKLLDEVKTPGLFQWAERFCAEAPVKNVMPETENLCKF 913
            +PAL ++  A    A+  A E     L LLE+AF   S G+ FF  G++  G LD+A GC+L  +R  E++  + L+D   TP L  W++RF A    K V+P+TE + +F
Sbjct:  111 WPALDAVSLAPTPGARAQAAEDTRAALSLLEEAFKDRSNGRAFFSGGDAAPGLLDLALGCFLPALRACERLHGLSLIDASATPLLDGWSQRFAAHPAAKRVLPDTEKVVQF 221
The following BLAST results are available for this feature:
BLAST of DY271096 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
GSTU6_ORYSJ4.731e-1746.07Probable glutathione S-transferase GSTU6 OS=Oryza ... [more]
GSTX2_MAIZE3.173e-1337.84Probable glutathione S-transferase BZ2 OS=Zea mays... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAP8YN07FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY271096 ID=DY271096; Name=DY271096; organism=Citrus clementina; type=EST; length=993bp
CACTTACTTCCTATGTGGACCTGTTGAAGTAATGTTTATCACATGTTTTC
ACAAACTCAATCATCTGTATATGCCTTTTCCTATCTATGGTTGGCATTTT
CTTACTGTTTCGGGTTATCTATGTGTGCACGACAATGTTCAGGCCAACTG
GTATTTAGAATGCCATCTTGATTTGTTGATATTATGGGCACTAGCGAATA
CCGGAGAAGTTTCTAAAGCAGAAGATCTACTTAAGGGCCTGAAGTCAAGA
CACTCCAAGATGATCAAGAAGAAGCAGGAACTTATGCAGACAGGAGTACA
GCTTGCAGAAGCTCTCTATGCGTACGGAAGGGGTAATGATGAGAAAGCAT
TGGAATTGCTTGGTCCAGATTTTGATGCCAATTCTTGTAAGATGATAGGG
GCATCTGATGAGCAGTTAGATGTATTCAATGAAGTTTGGTACAGTTTGTT
GCTGAATACTGGACGAGCTGCCAAGGCAATTGAAGTAATTGACAAGCGGA
TCAAGAAGAGGGAAGGAGCTCCTTTCTTGTGGCGCCTGCTGGAGAGAGCT
TATTCCATGGTGGGCAGGCAAGAAGCAGCAGCTTTGTTCCCTGCCTTGAA
AAGCATTGGTAGTGCAGATGGAGCGGAAGCTAAGGAAGCTGCGATTGAGC
AATTGATTGAAGGCTTGGTTTTGCTGGAGGATGCTTTTGTTAAGTGTAGC
AAAGGGAAGCCTTTCTTTGGTGAAAGCCAAATTGGGTTTCTTGACATTGC
ATTTGGTTGCTACTTGGGATGGGTGAGAGTGACAGAGAAAATGATTGAGG
TGAAGCTCCTTGATGAAGTCAAAACTCCTGGACTGTTTCAATGGGCTGAA
AGATTCTGTGCTGAAGCCCCTGTCAAAAATGTTATGCCTGAAACTGAAAA
CCTTTGCAAATTTGGCTAAGGTTCTTGGCAAACTCCAAACCTTCGGGCAA
ATGGAAATTAAAAAACCTTAATTTTGGGGCTTTGGAGGGGCCC
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