DY271116

Overview
NameDY271116
Unique NameDY271116
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1153
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13518 contig Ccv1_Contig13518:286..1438. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of DY271116 vs. ExPASy Swiss-Prot
Match: P2C16_ARATH (Protein phosphatase 2C 16 OS=Arabidopsis thaliana GN=HAB1 PE=1 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.807e-18
Identity = 88/300 (29.33%), Postives = 140/300 (46.67%), Query Frame = 3 
Query:   54 IEEMFTPVVVPFR-AGNSVCDNPTISTHSDIKRLKLMSDTAGLLSNSVAKVSEKSVARAHENCNYSDLGNEVGSVAVVVPEEDKVGGVSLLDMISENKSNWGSSDDVINRXXXXXXXXXXXGDPILDSSCSLSVASETSSLCGEDFLSFEASSEVGTLSSVDIEKSICSVDIIAKASDLPESNIETEIGSNPLAVAVSLEEKIGDGSKQNSSSVVLQLGFRNGVRATVGRSVFEVD*VPLWGFTSVCGRRPEMEEAVATGPYFLKIPIQC*LGPQGFDGLDQRIQSSKWPIPLGAFDGQG 950
            +EEM   V +    A N++C++  +    +I +LK ++D A LLS+S      +S       C   D           V E ++VG   LL  +S+ +S  GSS+                   + D    LSV  + S++  E  L  +A SE+ +LS+  +E  I +  ++A A  + ES+IE    +  L   V+ +         N+S VV++L   N      GRSV+E+D +PLWG  S+ G R EME+A A  P+FLK+PI+  +G    +G+   +         G +DG G
Sbjct:    1 MEEMTPAVAMTLSLAANTMCESSPV----EITQLKNVTDAADLLSDS----ENQSFCNGGTECTMED-----------VSELEEVGEQDLLKTLSDTRS--GSSN-------------------VFDEDDVLSVVEDNSAVISEGLLVVDAGSEL-SLSNTAME--IDNGRVLATAIIVGESSIEQVPTAEVLIAGVNQDT--------NTSEVVIRLPDENSNHLVKGRSVYELDCIPLWGTVSIQGNRSEMEDAFAVSPHFLKLPIKMLMGDH--EGMSPSLTHLTGHF-FGVYDGHG 246
The following BLAST results are available for this feature:
BLAST of DY271116 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
P2C16_ARATH1.807e-1829.33Protein phosphatase 2C 16 OS=Arabidopsis thaliana ... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAP8YO09FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY271116 ID=DY271116; Name=DY271116; organism=Citrus clementina; type=EST; length=1153bp
GATATTGGAGGGGTTAAAAGGTTACTTTTTGCACTTCCCAGATAGAGATT
CTGATAGAGGAGATGTTTACGCCAGTTGTGGTGCCATTTAGAGCAGGTAA
TTCAGTCTGTGATAACCCAACAATAAGTACGCATTCGGATATCAAAAGAC
TTAAGCTGATGTCCGACACTGCTGGCTTGTTGTCTAATTCTGTGGCAAAG
GTTTCTGAAAAATCTGTGGCCCGGGCACATGAGAATTGTAATTATAGTGA
TTTGGGGAATGAAGTTGGTTCTGTAGCTGTGGTTGTGCCGGAAGAGGATA
AAGTGGGAGGGGTTTCTTTGTTGGATATGATATCTGAAAATAAAAGCAAT
TGGGGTTCTAGTGATGATGTGATAAATCGGGAAAGTGAGGAAGATGATTC
CTTGTCATTGGAGGGGGATCCGATTCTTGATAGCTCTTGCTCGCTTTCTG
TGGCAAGTGAGACCAGTAGCTTATGTGGAGAGGATTTTTTAAGTTTCGAG
GCTTCGTCTGAGGTAGGAACTCTGAGTTCAGTTGACATTGAGAAGAGCAT
TTGCAGTGTTGATATTATTGCAAAGGCCAGTGATTTACCAGAGTCAAATA
TTGAGACTGAAATAGGGAGTAATCCTCTTGCTGTTGCCGTGAGCCTTGAG
GAAAAGATTGGGGATGGGTCTAAGCAAAATTCATCTTCAGTTGTTCTTCA
ATTGGGCTTTCGAAACGGGGTGAGGGCAACAGTTGGACGCAGTGTATTTG
AGGTGGATTAGGTGCCACTTTGGGGATTCACTTCTGTCTGTGGAAGGAGG
CCGGAAATGGAAGAAGCAGTTGCAACTGGGCCTTATTTTTTGAAAATCCC
AATTCAATGTTAATTGGGTCCCCAGGGGTTTGATGGGCTGGACCAACGAA
TTCAATCCAGCAAATGGCCCATTCCTTTGGGGGCCTTTGATGGCCAGGGA
AGGGTTGGCAGGTTGCAAAATAACGGTCGTGGTCCCCGTCCCTAAACGGT
TTTTTGGGGGAGAAAATAAAACCTTGGTTAAGGGAATGGCTGAAATGGAG
GGGAAATGGGGGGGGGGAAAAACCCGCCCCAAAAACACAAAGGAAAAAAA
AAAAATTTCCCCACATTTTTTTTTTGCACAAAAAAATTGGGAGAGGCAGA
AAA
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