DY271168
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DY271168 vs. ExPASy Swiss-Prot
Match: ARFD_ARATH (Auxin response factor 4 OS=Arabidopsis thaliana GN=ARF4 PE=2 SV=1) HSP 1 Score: 158.303 bits (399), Expect = 7.397e-40 Identity = 109/271 (40.22%), Postives = 137/271 (50.55%), Query Frame = 1 Query: 16 LGFEMRAPAHQSLALNGIRKDNINELVRARPTS--YTGFVESNRFPKVLQGQEICPLRSLTGKVDLNLGTWGKPNFGCNSMNMYQASKPNIYPPPSESLSNMFFPYGDMPKTVQHHTMRPYASNLQRENVKLNSSSIQMPAIGAEIRKENLLNEHKPVENIPTPT-FKANMTSHKDGSF--NGTAAGCKLFGFXXXXXXXXXXXXXXGKRSCTKVHKQGSLVGRAIDLSRLNGYNDLLSELEHLFNMESLLRDPAKGWRILYTHSENDVMV 813 L F M++ A+ L + + KD E V A + +G ++ +RFP+VLQGQEIC L+S + P YQA+K + YP + + PY PY + Q + + G E RK + NE N+ FK +M + GS ++GCKLFGF KR CTKVHKQGS VGRAIDLSRLNGY+DLL ELE LFNME LLRDP KGWRILYT SEND+MV Sbjct: 480 LDFAMQSHANPVLVSSRV-KDRFGEFVDATGVNPACSGVMDLDRFPRVLQGQEICSLKSFPQFAGFSPAAAPNPF-------AYQANKSSYYPLALHGIRSTHVPY-----------QNPYNAGNQSSGPPSRAINF-----GEETRKFDAQNEGGLPNNVTADLPFKIDMMGKQKGSELNMNASSGCKLFGFSLPVETPASKPQSSSKRICTKVHKQGSQVGRAIDLSRLNGYDDLLMELERLFNMEGLLRDPEKGWRILYTDSENDMMV 726 HSP 2 Score: 27.7202 bits (60), Expect = 7.397e-40 Identity = 11/26 (42.31%), Postives = 19/26 (73.08%), Query Frame = 3 Query: 813 LLGMIPWHEFRNGVFQNPIQTQEEME 890 ++G PWH+F N V++ + T+EE+E Sbjct: 726 VVGDDPWHDFCNVVWKIHLYTKEEVE 751
BLAST of DY271168 vs. ExPASy Swiss-Prot
Match: ARFX_ORYSJ (Auxin response factor 24 OS=Oryza sativa subsp. japonica GN=ARF24 PE=2 SV=1) HSP 1 Score: 66.6254 bits (161), Expect = 4.327e-13 Identity = 27/62 (43.55%), Postives = 44/62 (70.97%), Query Frame = 1 Query: 628 RSCTKVHKQGSLVGRAIDLSRLNGYNDLLSELEHLFNMESLLRDPAKGWRILYTHSENDVMV 813 RSC KVHKQG +GR+IDL++ Y++L++EL+ +F+ L +K W ++YT +E D+M+ Sbjct: 713 RSCKKVHKQGIALGRSIDLTKFTCYDELIAELDQMFDFNGELNSSSKNWMVVYTDNEGDMML 774 HSP 2 Score: 29.261 bits (64), Expect = 4.327e-13 Identity = 14/28 (50.00%), Postives = 20/28 (71.43%), Query Frame = 3 Query: 813 LLGMIPWHEFRNGVFQNPIQTQEEMEKM 896 L+G PW+EF N V + I T+EE++KM Sbjct: 774 LVGDDPWNEFCNMVHKIFIYTREEVQKM 801
BLAST of DY271168 vs. ExPASy Swiss-Prot
Match: ARFA_ARATH (Auxin response factor 1 OS=Arabidopsis thaliana GN=ARF1 PE=1 SV=2) HSP 1 Score: 71.633 bits (174), Expect = 7.341e-13 Identity = 32/62 (51.61%), Postives = 45/62 (72.58%), Query Frame = 1 Query: 628 RSCTKVHKQGSLVGRAIDLSRLNGYNDLLSELEHLFNMESLLRDPAKGWRILYTHSENDVMV 813 RSCTKVH QGS VGRAIDL+R Y DL +LE +F+++ L + K W+++YT E+D+M+ Sbjct: 542 RSCTKVHMQGSAVGRAIDLTRSECYEDLFKKLEEMFDIKGELLESTKKWQVVYTDDEDDMMM 603 HSP 2 Score: 23.483 bits (49), Expect = 7.341e-13 Identity = 11/29 (37.93%), Postives = 19/29 (65.52%), Query Frame = 3 Query: 813 LLGMIPWHEFRNGVFQNPIQTQEEMEKMT 899 ++G PW+EF V + I T EE++K++ Sbjct: 603 MVGDDPWNEFCGMVRKIFIYTPEEVKKLS 631
BLAST of DY271168 vs. ExPASy Swiss-Prot
Match: ARFD_ORYSJ (Auxin response factor 4 OS=Oryza sativa subsp. japonica GN=ARF4 PE=2 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 9.486e-13 Identity = 29/62 (46.77%), Postives = 45/62 (72.58%), Query Frame = 1 Query: 628 RSCTKVHKQGSLVGRAIDLSRLNGYNDLLSELEHLFNMESLLRDPAKGWRILYTHSENDVMV 813 RSCTKVHKQG +GR++DLS+ + Y++L +EL+ +F + L K W+I+YT +E D+M+ Sbjct: 692 RSCTKVHKQGVALGRSVDLSKFSNYDELKAELDKMFEFDGELVSSNKNWQIVYTDNEGDMML 753 HSP 2 Score: 26.1794 bits (56), Expect = 9.486e-13 Identity = 13/28 (46.43%), Postives = 19/28 (67.86%), Query Frame = 3 Query: 813 LLGMIPWHEFRNGVFQNPIQTQEEMEKM 896 L+G PW EF + V + I T+EE++KM Sbjct: 753 LVGDDPWEEFCSIVRKIYIYTKEEVQKM 780
BLAST of DY271168 vs. ExPASy Swiss-Prot
Match: ARFW_ORYSJ (Auxin response factor 23 OS=Oryza sativa subsp. japonica GN=ARF23 PE=1 SV=2) HSP 1 Score: 73.1738 bits (178), Expect = 2.523e-12 Identity = 29/62 (46.77%), Postives = 46/62 (74.19%), Query Frame = 1 Query: 628 RSCTKVHKQGSLVGRAIDLSRLNGYNDLLSELEHLFNMESLLRDPAKGWRILYTHSENDVMV 813 RSC KVHKQG +GR++DL++ NGY +L++EL+ +F+ L+ P K W ++YT +E D+M+ Sbjct: 725 RSCKKVHKQGIALGRSVDLTKFNGYEELIAELDDMFDFNGELKGPKKEWMVVYTDNEGDMML 786
BLAST of DY271168 vs. ExPASy Swiss-Prot
Match: ARFW_ORYSI (Auxin response factor 23 OS=Oryza sativa subsp. indica GN=ARF23 PE=2 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 2.523e-12 Identity = 29/62 (46.77%), Postives = 46/62 (74.19%), Query Frame = 1 Query: 628 RSCTKVHKQGSLVGRAIDLSRLNGYNDLLSELEHLFNMESLLRDPAKGWRILYTHSENDVMV 813 RSC KVHKQG +GR++DL++ NGY +L++EL+ +F+ L+ P K W ++YT +E D+M+ Sbjct: 725 RSCKKVHKQGIALGRSVDLTKFNGYEELIAELDDMFDFNGELKGPKKEWMVVYTDNEGDMML 786
BLAST of DY271168 vs. ExPASy Swiss-Prot
Match: ARFB_ARATH (Auxin response factor 2 OS=Arabidopsis thaliana GN=ARF2 PE=1 SV=2) HSP 1 Score: 73.1738 bits (178), Expect = 2.523e-12 Identity = 32/62 (51.61%), Postives = 43/62 (69.35%), Query Frame = 1 Query: 628 RSCTKVHKQGSLVGRAIDLSRLNGYNDLLSELEHLFNMESLLRDPAKGWRILYTHSENDVMV 813 RSCTKVHKQG +GR++DLS+ Y +L++EL+ LF L P K W I+YT END+M+ Sbjct: 733 RSCTKVHKQGIALGRSVDLSKFQNYEELVAELDRLFEFNGELMAPKKDWLIVYTDEENDMML 794
BLAST of DY271168 vs. ExPASy Swiss-Prot
Match: ARFI_ORYSJ (Auxin response factor 9 OS=Oryza sativa subsp. japonica GN=ARF9 PE=2 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 1.252e-11 Identity = 32/62 (51.61%), Postives = 46/62 (74.19%), Query Frame = 1 Query: 628 RSCTKVHKQGSLVGRAIDLSRLNGYNDLLSELEHLFNMESLLRDPAKGWRILYTHSENDVMV 813 RSCTKV QG VGRA+DL++LNGY DL S+LE +F+++ L K W+++YT E+D+M+ Sbjct: 547 RSCTKVIMQGMAVGRAVDLTKLNGYGDLRSKLEEMFDIQGDLCPTLKRWQVVYTDDEDDMML 608
BLAST of DY271168 vs. ExPASy Swiss-Prot
Match: ARFG_ORYSJ (Auxin response factor 7 OS=Oryza sativa subsp. japonica GN=ARF7 PE=2 SV=1) HSP 1 Score: 69.707 bits (169), Expect = 2.789e-11 Identity = 31/62 (50.00%), Postives = 46/62 (74.19%), Query Frame = 1 Query: 628 RSCTKVHKQGSLVGRAIDLSRLNGYNDLLSELEHLFNMESLLRDPAKGWRILYTHSENDVMV 813 RSCTKV QG VGRA+DL+RL+GY+DL +LE +F+++ L K W+++YT E+D+M+ Sbjct: 548 RSCTKVIMQGMAVGRAVDLTRLHGYDDLRCKLEEMFDIQGELSASLKKWKVVYTDDEDDMML 609 The following BLAST results are available for this feature:
BLAST of DY271168 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 9
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >DY271168 ID=DY271168; Name=DY271168; organism=Citrus clementina; type=EST; length=953bpback to top |