DY271193

Overview
NameDY271193
Unique NameDY271193
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length809
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12748 contig Ccv1_Contig12748:274..1081. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of DY271193 vs. ExPASy Swiss-Prot
Match: 12KD_FRAAN (Auxin-repressed 12.5 kDa protein OS=Fragaria ananassa PE=2 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.950e-28
Identity = 65/121 (53.72%), Postives = 79/121 (65.29%), Query Frame = 2 
Query:   41 MLEKLWDDVVAGPQPDRGLGRLRKITTTPLVVKEGGEAESSSGKFQRSLSMXXXXXXXXXXXXXXXXXXXRKDNVWRSVFHPGSNLATRGIGAEVFDKPTHPNSPTVYDWLYSGETRSKHH 403
            +L+KLWDD+VAGPQP+RGLG LRK+   PL +K+ GE+           S                    RKDNVWRSVFHPGSNL+++ +G +VFD P  PNSPTVYDW+YSGETRSKHH
Sbjct:    3 LLDKLWDDIVAGPQPERGLGMLRKVPQ-PLNLKDEGES-----------SKITMPTTPTTPVTPTTPISARKDNVWRSVFHPGSNLSSKTMGNQVFDSP-QPNSPTVYDWMYSGETRSKHH 110
The following BLAST results are available for this feature:
BLAST of DY271193 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
12KD_FRAAN1.950e-2853.72Auxin-repressed 12.5 kDa protein OS=Fragaria anana... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAP9YC19FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY271193 ID=DY271193; Name=DY271193; organism=Citrus clementina; type=EST; length=809bp
TAAGGATTTAGAAACTAGCAGCTAAATTTTAAATTTAAAGATGCTAGAGA
AGCTTTGGGACGATGTTGTGGCAGGGCCTCAGCCTGATCGTGGCCTTGGC
AGGCTGAGGAAAATCACCACAACACCCTTAGTAGTCAAAGAGGGTGGTGA
GGCGGAGTCGTCGTCGGGCAAGTTCCAGAGGTCTCTGTCAATGCCAGCGA
GTCCAGGGGCACCGTCGACGCCAGTGACGCCGACGACTCCGCTGTCGGCG
CGTAAGGACAACGTGTGGAGGAGCGTGTTTCACCCCGGTAGCAACCTTGC
TACTAGGGGTATCGGTGCAGAGGTCTTTGACAAGCCCACACATCCTAACT
CTCCCACTGTTTATGACTGGCTTTACAGTGGGGAGACTAGGAGCAAGCAT
CATCACTGAGTGGATGATACGCTCCAGCGATGTAAATGAATGTGATGGGT
CACCAACTCACCGGATGAGTTGCCTGCAGTCTGTAGATAGTGTCGTTTCG
TTTTGGATTTCGCAACGTGTCCTTGTCGTTTTTGTTAATGCTATTTGTAT
TACGTGTCCTTCCTATCTAAAGTTTGGTTTTANATGCTGCTGACTAAAAA
GTAAACCAAAGACTGTGTGATGTTTTATATCATATAATTGTATGTGACGT
GAGGATTGCCTAAGCTTGTGGGCGGAGATGAAAGGTTACTGGTTTTTGGG
TTTAGGACATGTTTTTGATTGGCATTTTTGTAAGAGCCAAGATCATCCCT
TCGTGGACGGTCGTGATGAGCATATATGTTTTATTATTAAATAAAAAATT
TGCTTCCCC
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