DY271217

Overview
NameDY271217
Unique NameDY271217
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length974
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY271217 vs. ExPASy Swiss-Prot
Match: COBL7_ARATH (COBRA-like protein 7 OS=Arabidopsis thaliana GN=COBL7 PE=1 SV=2)

HSP 1 Score: 342.043 bits (876), Expect = 9.133e-104
Identity = 166/288 (57.64%), Postives = 205/288 (71.18%), Query Frame = 1
Query:   88 ETGPFLQGFPMSDLKTAVMTAGDLTQMQVQVKIVGTQFGVGLRDVPMPKNISLANDGFLCSPVTRQGKSELHVCCTKDANAKSNFTVDDNFLPRQSGDLTIMYDVTRTYDSNYWAQVTVANHNPIGRLDNWKLSWDWMHDEFIYTMKGAYPYLADSSDCIYGPQGTYYRDLDFANVLNCERRPTIIDLPPTKANDTTLGLVPFCCRNGTTLPPSNESKQVNFGFSVPGLKMPPDLNKI*SLPPPQNWKIHRNLQP*LTIGAPPMEGEFPPLFPDPQWWSPKKNRLFAS 951
            E G    G+P SDLK+A+ TAGD+TQMQ +V++VGTQFGV   +VP+PKNI+LA DG+ C   T++G + L VCC  D +  +   +D+ FLPR+ GDLTIMYDV R+Y SNY AQVT+ NHNP+GRLDNWKLS+DWM DEFIYTMKGAYP + DSSDC+ GPQ  +Y+DLDF+NVL+C RRPT+IDLPPTK ND+T GL+PFCCRNGT LP S +  + +  F +   KMPPDLN I +L PPQNW+I+  L P    G P      P  F DP    P     FAS
Sbjct:  121 ENGTVFAGYPSSDLKSAIQTAGDVTQMQARVELVGTQFGVAPPNVPLPKNITLATDGWKCPKATQKGTNVLQVCCIPDPDYDNREIIDNEFLPRKDGDLTIMYDVVRSYSSNYMAQVTMENHNPLGRLDNWKLSFDWMRDEFIYTMKGAYPSIVDSSDCVDGPQAKHYQDLDFSNVLSCARRPTVIDLPPTKYNDSTFGLIPFCCRNGTILPRSMDPSKSSSVFQMQVYKMPPDLN-ISALSPPQNWRINGTLNPDYKCGPPVRVS--PSQFVDPS-GLPSNRTAFAS 404          

HSP 2 Score: 56.9954 bits (136), Expect = 9.133e-104
Identity = 28/37 (75.68%), Postives = 30/37 (81.08%), Query Frame = 3
Query:    3 FVGFQHEEILVSASNAVLFDGNSFPASVGNGTVFAGF 113
            FV F H EILVSASNAVL DG+S P SV NGTVFAG+
Sbjct:   93 FVKFAHREILVSASNAVLSDGSSLPVSVENGTVFAGY 129          
BLAST of DY271217 vs. ExPASy Swiss-Prot
Match: COBL8_ARATH (COBRA-like protein 8 OS=Arabidopsis thaliana GN=COBL8 PE=2 SV=1)

HSP 1 Score: 318.161 bits (814), Expect = 5.953e-97
Identity = 152/262 (58.02%), Postives = 190/262 (72.52%), Query Frame = 1
Query:   88 ETGPFLQGFPMSDLKTAVMTAGDLTQMQVQVKIVGTQFGVGLRDVPMPKNISLANDGFLCSPVTRQGKSELHVCCTKDANAKSNFTVDDNFLPRQSGDLTIMYDVTRTYDSNYWAQVTVANHNPIGRLDNWKLSWDWMHDEFIYTMKGAYPYLADSSDCIYGPQGTYYRDLDFANVLNCERRPTIIDLPPTKANDTTLGLVPFCCRNGTTLPPSNESKQVNFGFSVPGLKMPPDLNKI*SLPPPQNWKIHRNLQP*LTIGAP 873
            E G    GFP +DLKTA+MTAGD+TQM+ +V++VGTQFGV    VP+PKNI+L NDG+ C   T+QG + L VCCT + N  ++  +   FLPRQ GDLTIMYDVTR Y S+Y AQVT+ NHN +GRLDNW LS+ WM DEF+++ KGAYP + DSSDCI GPQ  YY+DLDF+NV++C RRP IIDLP TK NDT +G +P+CCRNGT LP S + ++    F +   KMPPDLN I S+ PPQ+W+I  NL P    G P
Sbjct:  115 ENGTIFAGFPSADLKTAIMTAGDVTQMEARVELVGTQFGVAPPSVPLPKNITLVNDGWSCPKPTQQGSNVLQVCCTPNPNITTS-KIGQKFLPRQEGDLTIMYDVTRAYQSSYSAQVTIENHNLLGRLDNWDLSFMWMKDEFLFSTKGAYPSVVDSSDCITGPQAKYYKDLDFSNVMSCARRPHIIDLPLTKYNDTNVGRIPYCCRNGTILPRSMDPEKSKSVFQIEVYKMPPDLN-ISSITPPQSWQIKGNLNPDYKCGPP 374          

HSP 2 Score: 58.151 bits (139), Expect = 5.953e-97
Identity = 28/37 (75.68%), Postives = 31/37 (83.78%), Query Frame = 3
Query:    3 FVGFQHEEILVSASNAVLFDGNSFPASVGNGTVFAGF 113
            FV F H EILVSA+NAVL DG+S PASV NGT+FAGF
Sbjct:   87 FVKFAHREILVSATNAVLSDGSSLPASVENGTIFAGF 123          
BLAST of DY271217 vs. ExPASy Swiss-Prot
Match: COBL9_ARATH (COBRA-like protein 9 OS=Arabidopsis thaliana GN=COBL9 PE=2 SV=1)

HSP 1 Score: 306.99 bits (785), Expect = 2.474e-92
Identity = 154/286 (53.85%), Postives = 192/286 (67.13%), Query Frame = 1
Query:   94 GPFLQGFPMSDLKTAVMTAGDLTQMQVQVKIVGTQFGVGLRDVPMPKNISLANDGFLCSPVTRQGKSELHVCCTKDANAKSNFTVDDNFLPRQSGDLTIMYDVTRTYDSNYWAQVTVANHNPIGRLDNWKLSWDWMHDEFIYTMKGAYPYLADSSDCIYGPQGTYYRDLDFANVLNCERRPTIIDLPPTKANDTTLGLVPFCCRNGTTLPPSNESKQVNFGFSVPGLKMPPDLNKI*SLPPPQNWKIHRNLQP*LTIGAPPMEGEFPPLFPDPQWWSPKKNRLFAS 951
            G    G+P+SDLKTA+ TAGDL QM  ++++VGTQF V    VP+P NISL N+G+LC   T Q K EL  CC +DA+   N T+   FLPRQ GDLTIMYDV R YD NY  +VT+ NHNP+GRLD+W+LS+DWM DEFI  M+GAYP + D++ CI+GPQ   Y  LDFA+VL CERRP IIDLPPTK +D+TLG +P CCRNGT LP   +  +    F++   KMPPD N+  +L PPQNW+I   L P  + G PP+    P  +PDP    P     FAS
Sbjct:  122 GTIFGGYPVSDLKTAIQTAGDLKQMTAEIELVGTQFMVAPPAVPLPSNISLVNEGWLCPVPTLQSKRELTTCCIRDASIIVNTTITTKFLPRQPGDLTIMYDVIRAYDQNYLTEVTMENHNPLGRLDHWELSFDWMRDEFIQKMQGAYPTVVDATKCIFGPQSLIYTGLDFADVLTCERRPIIIDLPPTKKDDSTLGNIPSCCRNGTILPRIMDPSKSVSVFTMQVAKMPPDFNRS-ALFPPQNWRIKGTLNPDYSCG-PPVR-VTPTFYPDPS-GMPTNKSSFAS 403          

HSP 2 Score: 53.9138 bits (128), Expect = 2.474e-92
Identity = 22/37 (59.46%), Postives = 30/37 (81.08%), Query Frame = 3
Query:    3 FVGFQHEEILVSASNAVLFDGNSFPASVGNGTVFAGF 113
            FVGFQH EIL+SA++A++ +G   PA VGNGT+F G+
Sbjct:   92 FVGFQHNEILISATDALIVNGTELPALVGNGTIFGGY 128          
BLAST of DY271217 vs. ExPASy Swiss-Prot
Match: CBL10_ARATH (COBRA-like protein 10 OS=Arabidopsis thaliana GN=COBL10 PE=2 SV=1)

HSP 1 Score: 270.396 bits (690), Expect = 2.495e-77
Identity = 131/273 (47.99%), Postives = 174/273 (63.74%), Query Frame = 1
Query:   94 GPFLQGFPMSDLKTAVMTAGDLTQMQVQVKIVGTQFGVGLRDVPMPKNISLANDGFLCSPVTRQGKSELHVCCTKDANAKSNFTVDDNFLPRQSGDLTIMYDVTRTYDSNYWAQVTVANHNPIGRLDNWKLSWDWMHDEFIYTMKGAYPYLADSSDCIYGPQGTYYRDLDFANVLNCERRPTIIDLPPTKANDTTLGLVPFCCRNGTTLPPSNESKQVNFGFSVPGLKMPPDLNKI*SLPPPQNWKIHRNLQP*LTIGAPPMEGEFPPLFPDP 912
            G    G P  DLKT++ TAGD TQ+   ++I GT FGV     PMP+ I L NDG+ C    R+G S +HVCC ++   K+   +   F PR+ GDL I+YDV +++DSNY AQVT+ N NP+GRLD W L+++WM  EFI TM+GAY +  D S+C+Y   G YY+DLDF+ V+NC+R+P I DLPP K  D   G +PFCC+NGT LPP  +  +    F +   K+PPDLN+  +L PPQ+WKI   L P    G PP+  + P  FPDP
Sbjct:  136 GTTFVGSPNMDLKTSIETAGDFTQISANIEITGTLFGVSKAVTPMPRTIKLTNDGWECPAAKRKGGS-MHVCCKRNPKIKNKIGLKTKFAPRRYGDLNIVYDVLQSFDSNYLAQVTIDNDNPLGRLDRWNLTFEWMRGEFINTMRGAYTHKKDPSECLYSKAGQYYKDLDFSQVMNCQRKPAISDLPPEKKEDNMTGKLPFCCKNGTLLPPIMDPSKSRSMFQLQVFKLPPDLNRT-ALYPPQHWKIDGVLNPQYKCG-PPVRVD-PSQFPDP 404          

HSP 2 Score: 40.4318 bits (93), Expect = 2.495e-77
Identity = 17/36 (47.22%), Postives = 25/36 (69.44%), Query Frame = 3
Query:    3 FVGFQHEEILVSASNAVLFDGNSFPASVGNGTVFAG 110
            F+GF+H+E++VSA+ A   DG+ +P    NGT F G
Sbjct:  107 FIGFRHKELIVSATGATPMDGD-YPLDASNGTTFVG 141          
BLAST of DY271217 vs. ExPASy Swiss-Prot
Match: CBL11_ARATH (COBRA-like protein 11 OS=Arabidopsis thaliana GN=COBL11 PE=2 SV=2)

HSP 1 Score: 236.884 bits (603), Expect = 7.151e-68
Identity = 116/268 (43.28%), Postives = 167/268 (62.31%), Query Frame = 1
Query:  109 GFPMSDLKTAVMTAGDLTQMQVQVKIVGTQFGVGLRDVPMPKNISLANDGFLCSPVTRQGKSELHVCCTKDANAKSNFTVDDNFLPRQSGDLTIMYDVTRTYDSNYWAQVTVANHNPIGRLDNWKLSWDWMHDEFIYTMKGAYPYLADSSDCIYGPQGTYYRDLDFANVLNCERRPTIIDLPPTKANDTTLGLVPFCCRNGTTLPPSNESKQVNFGFSVPGLKMPPDLNKI*SLPPPQNWKIHRNLQP*LTIGAPPMEGEFPPLFPDP 912
            G   +DLKT+++TAGD TQ+   ++I GT FG      PMPK+I L NDG+ C   T +G + + VCC ++   K+   V   F+PRQ GDL I+YDV + Y S+Y AQVT+ N +P+GRLD+W L+W+WM  EFI++M+GAY    ++ +C+    G +Y DLDF+ V NC+++P I DLP  + +D   G +PFCC+NGT LP   +  +    F +   K+PPD N+  +  PP+NWKI   + P    G PP+  +  P FPDP
Sbjct:  131 GSQNTDLKTSILTAGDYTQISTNIEITGTVFGGKGTATPMPKSIKLTNDGWQCPAATSKGGT-MQVCCKRNPKFKAKEKVKTKFMPRQHGDLNIIYDVLQAYASSYMAQVTIDNTSPLGRLDHWNLTWEWMRGEFIHSMRGAYAAEKNTLECLSSKAGQFYGDLDFSQVANCQKKPIIKDLPAERKDDNVTGKLPFCCKNGTLLPTHMDPSKSKAIFQLQVYKVPPDQNRT-AFFPPRNWKIDGIVNPTYKCG-PPIRVDATP-FPDP 394          

HSP 2 Score: 42.3578 bits (98), Expect = 7.151e-68
Identity = 21/36 (58.33%), Postives = 24/36 (66.67%), Query Frame = 3
Query:    3 FVGFQHEEILVSASNAVLFDGNSFPASVGNGTVFAG 110
            FVGF H EI+VSA+ AV  DG+ FP    NGT F G
Sbjct:   97 FVGFHHREIIVSATGAVSSDGD-FPVDATNGTTFIG 131          
The following BLAST results are available for this feature:
BLAST of DY271217 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
COBL7_ARATH9.133e-10457.64COBRA-like protein 7 OS=Arabidopsis thaliana GN=CO... [more]
COBL8_ARATH5.953e-9758.02COBRA-like protein 8 OS=Arabidopsis thaliana GN=CO... [more]
COBL9_ARATH2.474e-9253.85COBRA-like protein 9 OS=Arabidopsis thaliana GN=CO... [more]
CBL10_ARATH2.495e-7747.99COBRA-like protein 10 OS=Arabidopsis thaliana GN=C... [more]
CBL11_ARATH7.151e-6843.28COBRA-like protein 11 OS=Arabidopsis thaliana GN=C... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAP9YD22FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY271217 ID=DY271217; Name=DY271217; organism=Citrus clementina; type=EST; length=974bp
CTTTTGTGGGGTTTCAGCACGAGGAGATTTTGGTGTCTGCGTCGAACGCG
GTGTTGTTTGATGGGAATAGCTTCCCTGCTAGTGTGGGAAACGGGACCGT
TTTTGCAGGGTTTTCCGATGTCTGACTTGAAGACGGCGGTGATGACGGCG
GGTGACTTGACTCAGATGCAGGTCCAGGTTAAGATTGTGGGGACTCAGTT
TGGTGTTGGGTTACGTGATGTGCCCATGCCGAAGAATATTAGCCTTGCTA
ATGATGGGTTCTTGTGCTCTCCTGTGACCAGGCAAGGTAAGAGTGAGCTG
CACGTATGCTGCACGAAAGATGCAAATGCTAAATCAAACTTCACTGTTGA
TGATAATTTCTTGCCACGCCAAAGTGGTGATCTTACGATCATGTATGATG
TGACTAGAACATATGACTCGAATTACTGGGCGCAGGTTACAGTTGCAAAC
CATAACCCCATTGGCCGTCTTGATAATTGGAAATTGAGCTGGGACTGGAT
GCATGATGAATTTATCTACACTATGAAAGGGGCTTACCCTTATCTTGCTG
ATTCATCCGACTGCATATATGGTCCACAAGGTACATACTACAGGGACTTA
GACTTTGCCAATGTGTTGAATTGCGAGAGAAGGCCAACCATAATTGACCT
GCCTCCTACAAAGGCTAATGACACAACCCTTGGGCTGGTCCCTTTCTGTT
GTAGAAATGGTACTACCTTGCCCCCATCCAATGAATCCAAGCAAGTCAAC
TTCGGTTTTTCCGTGCCAGGTCTCAAAATGCCCCCTGATCTGAATAAAAT
CTGAAGCCTCCCCCCCCCTCAAAACTGGAAAATCCACCGGAACCTCCAAC
CCTAATTAACCATTGGCGCTCCTCCAATGGAGGGGGAATTCCCCCCCCTT
TTCCCGGACCCCCAGTGGTGGTCCCCAAAAAAAAACCGGCTTTTTGCCAG
CCGGGCAAGTTTGTGGGCAAAATC
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