DY271224

Overview
NameDY271224
Unique NameDY271224
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length877
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY271224 vs. ExPASy Swiss-Prot
Match: ERI2_XENLA (ERI1 exoribonuclease 2 OS=Xenopus laevis GN=eri2 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.465e-11
Identity = 31/64 (48.44%), Postives = 46/64 (71.88%), Query Frame = 1
Query:  466 QEFQYFVVIDFEATCDKDKNPYPQEIIEFPSVIVSSVTGQLEACFQTYVRPTCNQLLGDFCKDL 657
            Q F+Y ++IDFE+TC KD     QEIIEFP+V+++   G++E+ F TYV+P  + +L DFC +L
Sbjct:   33 QFFEYLIIIDFESTCWKDGKHSTQEIIEFPAVLLNVSNGEIESEFHTYVQPQEHPILSDFCTEL 96          
BLAST of DY271224 vs. ExPASy Swiss-Prot
Match: ERI2_HUMAN (ERI1 exoribonuclease 2 OS=Homo sapiens GN=ERI2 PE=2 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 4.204e-11
Identity = 32/65 (49.23%), Postives = 49/65 (75.38%), Query Frame = 1
Query:  466 QEFQYFVVIDFEATCDKD-KNPYPQEIIEFPSVIVSSVTGQLEACFQTYVRPTCNQLLGDFCKDL 657
            Q F Y +VIDFE+TC  D K+ + QEIIEFP+V++++ TGQ+++ FQ YV+P  + +L +FC +L
Sbjct:   32 QLFDYLIVIDFESTCWNDGKHHHSQEIIEFPAVLLNTSTGQIDSEFQAYVQPQEHPILSEFCMEL 96          
BLAST of DY271224 vs. ExPASy Swiss-Prot
Match: ERI3_MOUSE (ERI1 exoribonuclease 3 OS=Mus musculus GN=Eri3 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 9.366e-11
Identity = 32/67 (47.76%), Postives = 46/67 (68.66%), Query Frame = 1
Query:  457 FQPQEFQYFVVIDFEATCDKDKNPYPQEIIEFPSVIVSSVTGQLEACFQTYVRPTCNQLLGDFCKDL 657
            F PQ + YF+V+DFEATCDK +  +PQEIIEFP + ++  T ++E+ F  YV+P  +  L  FC +L
Sbjct:  138 FPPQRYHYFLVLDFEATCDKPQI-HPQEIIEFPILKLNGRTMEIESTFHMYVQPVVHPQLTPFCTEL 203          
BLAST of DY271224 vs. ExPASy Swiss-Prot
Match: ERI3_HUMAN (ERI1 exoribonuclease 3 OS=Homo sapiens GN=ERI3 PE=1 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 9.366e-11
Identity = 32/67 (47.76%), Postives = 46/67 (68.66%), Query Frame = 1
Query:  457 FQPQEFQYFVVIDFEATCDKDKNPYPQEIIEFPSVIVSSVTGQLEACFQTYVRPTCNQLLGDFCKDL 657
            F PQ + YF+V+DFEATCDK +  +PQEIIEFP + ++  T ++E+ F  YV+P  +  L  FC +L
Sbjct:  138 FPPQRYHYFLVLDFEATCDKPQI-HPQEIIEFPILKLNGRTMEIESTFHMYVQPVVHPQLTPFCTEL 203          
BLAST of DY271224 vs. ExPASy Swiss-Prot
Match: ERI3_BOVIN (ERI1 exoribonuclease 3 OS=Bos taurus GN=ERI3 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 9.366e-11
Identity = 32/67 (47.76%), Postives = 46/67 (68.66%), Query Frame = 1
Query:  457 FQPQEFQYFVVIDFEATCDKDKNPYPQEIIEFPSVIVSSVTGQLEACFQTYVRPTCNQLLGDFCKDL 657
            F PQ + YF+V+DFEATCDK +  +PQEIIEFP + ++  T ++E+ F  YV+P  +  L  FC +L
Sbjct:  138 FPPQRYHYFLVLDFEATCDKPQI-HPQEIIEFPILKLNGRTMEIESTFHMYVQPVVHPQLTPFCTEL 203          
The following BLAST results are available for this feature:
BLAST of DY271224 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
ERI2_XENLA2.465e-1148.44ERI1 exoribonuclease 2 OS=Xenopus laevis GN=eri2 P... [more]
ERI2_HUMAN4.204e-1149.23ERI1 exoribonuclease 2 OS=Homo sapiens GN=ERI2 PE=... [more]
ERI3_MOUSE9.366e-1147.76ERI1 exoribonuclease 3 OS=Mus musculus GN=Eri3 PE=... [more]
ERI3_HUMAN9.366e-1147.76ERI1 exoribonuclease 3 OS=Homo sapiens GN=ERI3 PE=... [more]
ERI3_BOVIN9.366e-1147.76ERI1 exoribonuclease 3 OS=Bos taurus GN=ERI3 PE=2 ... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAP9YE09FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY271224 ID=DY271224; Name=DY271224; organism=Citrus clementina; type=EST; length=877bp
CACAAAAGGTGGTTAACAAAGAGAAAGATCTGATGTACTTGATGGTGGAT
CTTAATTATACAAAAGATCATGATGGCCCTTGAACATAATGAAGCTATGC
AGAGGATGTGTGAGGCATCCTTGAAAGGCCTCCAGAGCAGGGGAATCCGT
TGCAACCTGCAGTATAATAATGGGAATTCCGTTGAACTTAAAGATGACAC
CATTGTCCATCCAGGTGGGGATGCCGGAGAATCAATTCATCAGTTGAGCA
GTGAGTTTGTGGAATATTCAAATGAATTTTATAACAACCCCACCTACCAA
CATGATTTTGGTTCATGGTCCACCTTCTATCCTGACTCTCAAAAGGTGCA
TCACTGCCAAATGAATTCTTTTGAGAGCCAATTTTATCCCTTTCCTGTGG
AAAATCGGTTTCAGTTTGCACCATACAATATGCTCACACCAGCTCACCCA
TATGATTTCCAGCCTCAAGAATTTCAGTATTTTGTGGTAATAGACTTTGA
GGCTACTTGCGACAAGGACAAGAATCCTTATCCCCAGGAGATAATCGAGT
TTCCATCTGTCATTGTGAGTAGTGTAACTGGTCAACTGGAAGCATGTTTT
CAGACATATGTGCGGCCGACTTGCAATCAACTACTGGGTGATTTCTGCAA
GGATCTGGACAAGGTTCCCACCAATTTCAGGTGGACAGAAGTGTTTACTC
AAACCAAAGGTTTTTCTTAGGATGAAAATGGGCTGGAAAATAAGGGCATA
AAAAAACCCACTTTGCCGGCCTGGACTGGCCAAATGGGATTGGCCGGGGA
AGGTTGGAATCTGAATGCCAATTCAAAAAAATTGGAAACCCCCTTTTTTT
TAACAAAGGGTCACCTTTAAAATTTCC
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