DY271228

Overview
NameDY271228
Unique NameDY271228
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length875
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig354 contig Ccv1_Contig354:422..1296. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY271228 vs. ExPASy Swiss-Prot
Match: CMTA2_ARATH (Calmodulin-binding transcription activator 2 OS=Arabidopsis thaliana GN=CMTA2 PE=1 SV=1)

HSP 1 Score: 223.787 bits (569), Expect = 1.015e-57
Identity = 110/139 (79.14%), Postives = 121/139 (87.05%), Query Frame = 2
Query:    2 AIQIQKKFRGWKKRKEFLLIRQRIVKIQAHVRGHQARKKYRPIIWSVGILEKVILRWRRKGSGLRGFRRDALGMNPNPQHVPLKEDDYDFLKDGRKQTEERLQKALGRVKSMVQYPEARAQYRRLLTVVEGSRETKESN 418
            A+QIQKK+RGWKKRKEFLLIRQRIVKIQAHVRGHQ RK+YR IIWSVG+LEK+ILRWRRKGSGLRGF+RD +     P     +EDDYDFLK+GRKQTEERLQKAL RVKSM QYPEARAQYRRLLTVVEG RE + S+
Sbjct:  874 AVQIQKKYRGWKKRKEFLLIRQRIVKIQAHVRGHQVRKQYRAIIWSVGLLEKIILRWRRKGSGLRGFKRDTISKPTEPVCPAPQEDDYDFLKEGRKQTEERLQKALTRVKSMAQYPEARAQYRRLLTVVEGFRENEASS 1012          
BLAST of DY271228 vs. ExPASy Swiss-Prot
Match: CMTA1_ARATH (Calmodulin-binding transcription activator 1 OS=Arabidopsis thaliana GN=CMTA1 PE=2 SV=1)

HSP 1 Score: 211.846 bits (538), Expect = 3.993e-54
Identity = 106/147 (72.11%), Postives = 123/147 (83.67%), Query Frame = 2
Query:    2 AIQIQKKFRGWKKRKEFLLIRQRIVKIQAHVRGHQARKKYRPIIWSVGILEKVILRWRRKGSGLRGFRRDALGMNPNPQ--------HVPLKEDDYDFLKDGRKQTEERLQKALGRVKSMVQYPEARAQYRRLLTVVEGSRETKESN 418
            A  IQKK+RGWKKRKEFLLIRQRIVKIQAHVRGHQ RK+YR +IWSVG+LEK+ILRWRRKG+GLRGF+R+A+     P+         +P +ED+YD+LK+GRKQTEERLQKAL RVKSMVQYPEAR QYRRLLTVVEG RE + S+
Sbjct:  825 ATHIQKKYRGWKKRKEFLLIRQRIVKIQAHVRGHQVRKQYRTVIWSVGLLEKIILRWRRKGNGLRGFKRNAVAKTVEPEPPVSAICPRIP-QEDEYDYLKEGRKQTEERLQKALTRVKSMVQYPEARDQYRRLLTVVEGFRENEASS 970          
BLAST of DY271228 vs. ExPASy Swiss-Prot
Match: CMTA3_ARATH (Calmodulin-binding transcription activator 3 OS=Arabidopsis thaliana GN=CMTA3 PE=1 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 3.064e-46
Identity = 96/143 (67.13%), Postives = 112/143 (78.32%), Query Frame = 2
Query:    2 AIQIQKKFRGWKKRKEFLLIRQRIVKIQAHVRGHQARKKYRPIIWSVGILEKVILRWRRKGSGLRGFRRDALGMNPNPQHVPLKEDDYDFLKDGRKQTEERLQKALGRVKSMVQYPEARAQYRRLLTVVEGSRETKESNMVPN 430
            AI+IQ KFRG+K RK++L+ RQRI+KIQAHVRG+Q RK YR IIWSVG+LEKVILRWRRKG+GLRGF+ +AL      Q    KE+D DF K GRKQTE+RLQKAL RVKSMVQYPEAR QYRRLL VV   +E+K    + N
Sbjct:  856 AIRIQNKFRGYKGRKDYLITRQRIIKIQAHVRGYQFRKNYRKIIWSVGVLEKVILRWRRKGAGLRGFKSEAL--VEKMQDGTEKEEDDDFFKQGRKQTEDRLQKALARVKSMVQYPEARDQYRRLLNVVNDIQESKVEKALEN 996          
BLAST of DY271228 vs. ExPASy Swiss-Prot
Match: CMTA4_ARATH (Calmodulin-binding transcription activator 4 OS=Arabidopsis thaliana GN=CMTA4 PE=1 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 6.420e-28
Identity = 68/127 (53.54%), Postives = 85/127 (66.93%), Query Frame = 2
Query:    2 AIQIQKKFRGWKKRKEFLLIRQRIVKIQAHVRGHQARKKYRPIIWSVGILEKVILRWRRKGSGLRGFRRDALGMNPNPQHVPLKEDDYDFLKDGRKQ-TEERLQKALGRVKSMVQYPEARAQYRRLL 379
            A+ IQK FRG+K RK FL +RQ++VKIQAHVRG+Q RK Y+ I W+V IL+KV+LRWRRKG GLRGFR+D      +        +D D LK  RKQ  +  + +A  RV SM   PEAR QY R+L
Sbjct:  859 ALSIQKNFRGYKDRKCFLELRQKVVKIQAHVRGYQIRKNYKVICWAVRILDKVVLRWRRKGVGLRGFRQDVESTEDS--------EDEDILKVFRKQKVDVAVNEAFSRVLSMSNSPEARQQYHRVL 977          
BLAST of DY271228 vs. ExPASy Swiss-Prot
Match: CMTA6_ARATH (Calmodulin-binding transcription activator 6 OS=Arabidopsis thaliana GN=CMTA6 PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 3.086e-22
Identity = 53/125 (42.40%), Postives = 84/125 (67.20%), Query Frame = 2
Query:    2 AIQIQKKFRGWKKRKEFLLIRQRIVKIQAHVRGHQARKKYRPIIWSVGILEKVILRWRRKGSGLRGFRRDALGMNPNPQHVPLKEDDYDFLKDGRKQTEERLQKALGRVKSMVQYPEARAQYRRL 376
            A +IQ +F+ WK R+E+L +R++ ++IQA  RG QAR++Y+ I+WSVG+LEK +LRWR+K  G RG +  A   +P        E   DF K  ++Q EERL++++ RV++M +  +A+  YRR+
Sbjct:  694 AYRIQCRFQTWKIRREYLNMRRQAIRIQAAFRGLQARRQYKKILWSVGVLEKAVLRWRQKRKGFRGLQVAAEEDSPG-------EAQEDFYKTSQRQAEERLERSVVRVQAMFRSKKAQQDYRRM 811          
BLAST of DY271228 vs. ExPASy Swiss-Prot
Match: CMTA5_ARATH (Calmodulin-binding transcription activator 5 OS=Arabidopsis thaliana GN=CMTA5 PE=2 SV=2)

HSP 1 Score: 103.99 bits (258), Expect = 1.173e-21
Identity = 53/125 (42.40%), Postives = 79/125 (63.20%), Query Frame = 2
Query:    2 AIQIQKKFRGWKKRKEFLLIRQRIVKIQAHVRGHQARKKYRPIIWSVGILEKVILRWRRKGSGLRGFRRDALGMNPNPQHVPLKEDDYDFLKDGRKQTEERLQKALGRVKSMVQYPEARAQYRRL 376
            A +IQ +F+ WK R+EFL +R++ ++IQA  RG Q R++Y+ I WSVG+LEK ILRWR K  G RG +         P      E   DF K  +KQ EERL++++ +V++M +  +A+  YRR+
Sbjct:  780 AARIQYRFQTWKMRREFLNMRKKAIRIQAAFRGFQVRRQYQKITWSVGVLEKAILRWRLKRKGFRGLQVS------QPDEKEGSEAVEDFYKTSQKQAEERLERSVVKVQAMFRSKKAQQDYRRM 898          
The following BLAST results are available for this feature:
BLAST of DY271228 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
CMTA2_ARATH1.015e-5779.14Calmodulin-binding transcription activator 2 OS=Ar... [more]
CMTA1_ARATH3.993e-5472.11Calmodulin-binding transcription activator 1 OS=Ar... [more]
CMTA3_ARATH3.064e-4667.13Calmodulin-binding transcription activator 3 OS=Ar... [more]
CMTA4_ARATH6.420e-2853.54Calmodulin-binding transcription activator 4 OS=Ar... [more]
CMTA6_ARATH3.086e-2242.40Calmodulin-binding transcription activator 6 OS=Ar... [more]
CMTA5_ARATH1.173e-2142.40Calmodulin-binding transcription activator 5 OS=Ar... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAP9YE14FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY271228 ID=DY271228; Name=DY271228; organism=Citrus clementina; type=EST; length=875bp
CGCTATACAGATCCAGAAGAAGTTTCGTGGTTGGAAGAAGAGGAAAGAAT
TCCTATTAATTAGGCAAAGGATTGTTAAAATTCAGGCACATGTGAGAGGA
CATCAGGCAAGAAAAAAATATAGGCCAATCATCTGGTCAGTTGGAATCCT
GGAAAAGGTCATTTTGCGCTGGAGACGTAAAGGCAGCGGTTTGCGTGGAT
TCCGACGTGATGCTCTCGGTATGAATCCTAATCCACAACATGTGCCATTG
AAGGAAGACGATTATGATTTTTTAAAGGATGGAAGGAAACAAACTGAAGA
AAGGTTGCAAAAGGCACTTGGCAGAGTGAAGTCCATGGTTCAGTATCCTG
AGGCACGAGCTCAGTACCGTAGGTTGCTGACCGTTGTCGAAGGTTCCCGT
GAAACCAAGGAGTCCAATATGGTTCCAAATGGCTTGGAAGATATAGCTGA
TGGAGACCTCGATCTGATTGATATTGACTCACTTTTGGATGATGACACCT
TCATGTCTGTGGCATTTGAATGAGCCTGTAATTCACCAATTTTTACCTTC
CTGTACATAGAAGGCCATCACCATTGCAGCTTTCAAAAGGTCCTAACTTT
ATTTTGTATGTATATATAGTATCTAATCAACATAGGAAATGATTTAAGAT
AGATTTAAGATCCCTGGTATCATCAATGGTACTGATAAATTGTTTTTATT
TTTCGGTATCATAGTTCTTAATGTTATTGCATGCATTACCATAGTTAAAG
AACAGAGATTGCATTTTTTTTCTGGCAGTTTGGCAGTATTAGTTTATTTT
TCAAACTGCAATTCCGAAAAATTGGTACTCCCGTGGCATACTGATATTTA
AAACTTAAATATGTGCTTGGTTGAT
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