DY271254

Overview
NameDY271254
Unique NameDY271254
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length902
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig3980 contig Ccv1_Contig3980:763..1665. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY271254 vs. ExPASy Swiss-Prot
Match: AP1G1_MOUSE (AP-1 complex subunit gamma-1 OS=Mus musculus GN=Ap1g1 PE=1 SV=3)

HSP 1 Score: 179.489 bits (454), Expect = 2.309e-44
Identity = 93/245 (37.96%), Postives = 154/245 (62.86%), Query Frame = 2
Query:   14 ELIDYLEISDQEFKGDLTAKICSMVEKFSPDKIWYIDQMLKVLSEAGNFVKDEVWHALIVVISNASDLHGYTVRALYRAVQTSIEQESLVRVAIWCIGEYGDMLVNNGGVLNIEDPITVTESDAVDVVEIAIKHHSSDITTKAMAMVALLKLSSRFPSCSERIRDIIVQNKGSLVLELQQRSIEFNSIVEKHQNIRSTLVERMPVLDEATFSG------RRAGSLPATVSTSSGTSLNLPNGVAN 730
            EL+ +L+  + EFK D  + I    EK++P K W+ID +++VL+ AG++V+D+    LI +I+N+ ++H YTV+ LY+A+     Q+ LV+VA WCIGEYGD+LV+  G    E+PI VTE + +D++E  +  + S   T+  A+ A++KLS+RF     RI+ ++     S+ +ELQQR++E+N++ +K+ ++RS L+ERMPV+++ T +G          + PA + T    S   P   AN
Sbjct:  384 ELLYFLDSCEPEFKADCASGIFLAAEKYAPSKRWHIDTIMRVLTTAGSYVRDDAVPNLIQLITNSVEMHAYTVQRLYKAILGDYSQQPLVQVAAWCIGEYGDLLVS--GQCEEEEPIQVTEDEVLDILESVLISNMSTSVTRGYALTAIMKLSTRFTCTVNRIKKVVSIYGSSIDVELQQRAVEYNALFKKYDHMRSALLERMPVMEKVTTNGPSEIVQTNGETEPAPLETKPPPSGPQPTSQAN 626          
BLAST of DY271254 vs. ExPASy Swiss-Prot
Match: AP1G1_HUMAN (AP-1 complex subunit gamma-1 OS=Homo sapiens GN=AP1G1 PE=1 SV=5)

HSP 1 Score: 179.489 bits (454), Expect = 2.309e-44
Identity = 93/245 (37.96%), Postives = 154/245 (62.86%), Query Frame = 2
Query:   14 ELIDYLEISDQEFKGDLTAKICSMVEKFSPDKIWYIDQMLKVLSEAGNFVKDEVWHALIVVISNASDLHGYTVRALYRAVQTSIEQESLVRVAIWCIGEYGDMLVNNGGVLNIEDPITVTESDAVDVVEIAIKHHSSDITTKAMAMVALLKLSSRFPSCSERIRDIIVQNKGSLVLELQQRSIEFNSIVEKHQNIRSTLVERMPVLDEATFSG------RRAGSLPATVSTSSGTSLNLPNGVAN 730
            EL+ +L+  + EFK D  + I    EK++P K W+ID +++VL+ AG++V+D+    LI +I+N+ ++H YTV+ LY+A+     Q+ LV+VA WCIGEYGD+LV+  G    E+PI VTE + +D++E  +  + S   T+  A+ A++KLS+RF     RI+ ++     S+ +ELQQR++E+N++ +K+ ++RS L+ERMPV+++ T +G          + PA + T    S   P   AN
Sbjct:  384 ELLYFLDSCEPEFKADCASGIFLAAEKYAPSKRWHIDTIMRVLTTAGSYVRDDAVPNLIQLITNSVEMHAYTVQRLYKAILGDYSQQPLVQVAAWCIGEYGDLLVS--GQCEEEEPIQVTEDEVLDILESVLISNMSTSVTRGYALTAIMKLSTRFTCTVNRIKKVVSIYGSSIDVELQQRAVEYNALFKKYDHMRSALLERMPVMEKVTTNGPTEIVQTNGETEPAPLETKPPPSGPQPTSQAN 626          
BLAST of DY271254 vs. ExPASy Swiss-Prot
Match: AP1G1_PONAB (AP-1 complex subunit gamma-1 OS=Pongo abelii GN=AP1G1 PE=2 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 5.144e-44
Identity = 93/245 (37.96%), Postives = 153/245 (62.45%), Query Frame = 2
Query:   14 ELIDYLEISDQEFKGDLTAKICSMVEKFSPDKIWYIDQMLKVLSEAGNFVKDEVWHALIVVISNASDLHGYTVRALYRAVQTSIEQESLVRVAIWCIGEYGDMLVNNGGVLNIEDPITVTESDAVDVVEIAIKHHSSDITTKAMAMVALLKLSSRFPSCSERIRDIIVQNKGSLVLELQQRSIEFNSIVEKHQNIRSTLVERMPVLDEATFSG------RRAGSLPATVSTSSGTSLNLPNGVAN 730
            EL+ +L+  + EFK D  + I    EK++P K W+ID +++VL+ AG++V+D+    LI +I+N+ ++H YTV+ LY+A+     Q+ LV+VA WCIGEYGD+LV+  G    E PI VTE + +D++E  +  + S   T+  A+ A++KLS+RF     RI+ ++     S+ +ELQQR++E+N++ +K+ ++RS L+ERMPV+++ T +G          + PA + T    S   P   AN
Sbjct:  384 ELLYFLDSCEPEFKADCASGIFLAAEKYAPSKRWHIDTIMRVLTTAGSYVRDDAVPNLIQLITNSVEMHAYTVQRLYKAILGDYSQQPLVQVAAWCIGEYGDLLVS--GQCEEEGPIQVTEDEVLDILESVLISNMSTSVTRGYALTAIMKLSTRFTCTVNRIKKVVSIYGSSIDVELQQRAVEYNALFKKYDHMRSALLERMPVMEKVTTNGPTEIVQTNGETEPAPLETKPPPSGPQPTSQAN 626          
BLAST of DY271254 vs. ExPASy Swiss-Prot
Match: AP1G_DICDI (AP-1 complex subunit gamma OS=Dictyostelium discoideum GN=ap1g1 PE=1 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 5.509e-38
Identity = 81/215 (37.67%), Postives = 144/215 (66.98%), Query Frame = 2
Query:    5 LTIELIDYLEISDQEFKGDLTAKICSMVEKFSPDKIWYIDQMLKVLSEAGNFVKDEVWHALIVVISNASDLHGYTVRALYRAVQTSIEQESLVRVAIWCIGEYGDMLVNNGGVLNIED---PITVTESDAVDVVEIAIKHHSSDITTKAMAMVALLKLSSRFPSCS-ERIRDIIVQNKGSLVLELQQRSIEFNSIVEKHQNIRSTLVERMPVLDE 637
            L  EL+++L I+D +FK +L AK+C + EK++P+K W ID +L+V+S AGNF+ DEV   LI +IS+  +L  Y V+ LY A++  I Q+ L +V +WCIGEYGD+LV +   L  ++    + V+E   +D++++  +H ++   T+  ++ +L KLSSRF   S +RI+ +I   K ++ LELQQR+ E++++ +  +  ++++++RMP +++
Sbjct:  379 LVRELLNFLLIADAQFKSELVAKLCIVTEKYAPNKRWQIDTILRVMSIAGNFIPDEVPSNLIQLISSTPELSSYAVQKLYLALKQDITQQPLTQVGLWCIGEYGDLLVADKSQLPKDEDGLSLNVSEQAVIDIIDLIFRHATTTQATRQYSLTSLAKLSSRFSQSSLQRIKTMIDNYKQNINLELQQRACEYSTLFDFDK--KASILDRMPPIEK 591          
BLAST of DY271254 vs. ExPASy Swiss-Prot
Match: AP1G2_MOUSE (AP-1 complex subunit gamma-like 2 OS=Mus musculus GN=Ap1g2 PE=2 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 1.149e-35
Identity = 78/207 (37.68%), Postives = 127/207 (61.35%), Query Frame = 2
Query:   14 ELIDYLEISDQEFKGDLTAKICSMVEKFSPDKIWYIDQMLKVLSEAGNFVKDEVWHALIVVISNASDLHGYTVRALYRAVQTSIEQESLVRVAIWCIGEYGDMLVNNGGVLNIEDPITVTESDAVDVVEIAIKHHSSDITTKAMAMVALLKLSSRFPSCSERIRDIIVQNKGSLVLELQQRSIEFNSIVEKHQNIRSTLVERMPVLD 634
            EL  +LE    + + D  + I    E+F+P K W+ID +L VL+ AG  V+D+    L  +I  A +LH Y+VR LY A+   I Q+ LV+VA WCIGEYGD+L+   G     +P  V E D + ++E  ++ H S   T+  A+ AL+KLS+R    + RIR ++      + LELQQR++E+N++ +K+ ++R+ ++E+MP+++
Sbjct:  385 ELQAFLESCPPDLRADCASGILLAAERFAPSKRWHIDTILHVLTTAGAHVRDDAVANLTQLIGEAEELHTYSVRRLYSALAEDISQQPLVQVAAWCIGEYGDLLLE--GNCEETEPFQVEEEDVLALLEKVLQSHMSLPATRGYAITALMKLSTRLRGDNNRIRQVVSIYGSCVDLELQQRAVEYNTLFQKYDHMRAAILEKMPLVE 589          
BLAST of DY271254 vs. ExPASy Swiss-Prot
Match: AP1G2_HUMAN (AP-1 complex subunit gamma-like 2 OS=Homo sapiens GN=AP1G2 PE=1 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 7.445e-35
Identity = 76/207 (36.71%), Postives = 127/207 (61.35%), Query Frame = 2
Query:   14 ELIDYLEISDQEFKGDLTAKICSMVEKFSPDKIWYIDQMLKVLSEAGNFVKDEVWHALIVVISNASDLHGYTVRALYRAVQTSIEQESLVRVAIWCIGEYGDMLVNNGGVLNIEDPITVTESDAVDVVEIAIKHHSSDITTKAMAMVALLKLSSRFPSCSERIRDIIVQNKGSLVLELQQRSIEFNSIVEKHQNIRSTLVERMPVLD 634
            EL  +LE    + + D  + I    E+F+P K W+ID +L VL+ AG  V+D+    L  +I  A +LH Y+VR LY A+   I Q+ LV+VA WCIGEYGD+L+   G     +P+ V E + + ++E  ++ H S   T+  A+ AL+KLS+R    + RIR ++      L +ELQQR++E++++  K+ ++R+ ++E+MP+++
Sbjct:  385 ELQAFLESCPPDLRADCASGILLAAERFAPTKRWHIDTILHVLTTAGTHVRDDAVANLTQLIGGAQELHAYSVRRLYNALAEDISQQPLVQVAAWCIGEYGDLLL--AGNCEEIEPLQVDEEEVLALLEKVLQSHMSLPATRGYALTALMKLSTRLCGDNNRIRQVVSIYGSCLDVELQQRAVEYDTLFRKYDHMRAAILEKMPLVE 589          
BLAST of DY271254 vs. ExPASy Swiss-Prot
Match: AP1G1_USTMA (AP-1 complex subunit gamma-1 OS=Ustilago maydis GN=APL4 PE=3 SV=2)

HSP 1 Score: 144.436 bits (363), Expect = 8.232e-34
Identity = 81/212 (38.21%), Postives = 125/212 (58.96%), Query Frame = 2
Query:    5 LTIELIDYLEISDQEFKGDLTAKICSMVEKFSPDKIWYIDQMLKVLSEAGNFVKDEVWHALIVVISNASDLHGYTVRALYRAVQTSIEQESLVRVAIWCIGEYGDMLVNNGGVLNIEDPITVTESDAVDVVEIAIKHHSSDITT---KAMAMVALLKLSSRFPSCSE--RIRDIIVQNKGSLVLELQQRSIEFNSIVEKHQNIRSTLVERMP 625
            LT EL+ +LE++D EFK  +T +IC   EKF+P+K W+ID +L+VL  AGN+V++E+  A I ++ +  +L  YTV+ L+  +     QESL   A+W IGE+GD+L+  G   N ED   V E    DVV++      S       +   + +L KL +R    S+  RI  II   + S+ +E+QQRS+EF +++ K  +IR  ++E MP
Sbjct:  383 LTRELLSFLEVADNEFKLGMTTQICLAAEKFAPNKRWHIDTVLRVLKLAGNYVREEILSAFIRLVCHTPELQAYTVQKLFSGLHQDFSQESLTLAAVWVIGEFGDVLIQGG---NFEDEELVREVQPKDVVDLLSSVLDSPYVNGLIRQFVLTSLAKLHTRLSDASQQSRIEQIIASFETSVEVEIQQRSVEFATLL-KRSDIRQGVLESMP 590          
BLAST of DY271254 vs. ExPASy Swiss-Prot
Match: AP1G1_SCHPO (AP-1 complex subunit gamma-1 OS=Schizosaccharomyces pombe GN=apl4 PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 4.837e-26
Identity = 74/211 (35.07%), Postives = 113/211 (53.55%), Query Frame = 2
Query:   14 ELIDYLEISDQEFKGDLTAKICSMVEKFSPDKIWYIDQMLKVLSEAGNFVKDEVWHALIVVISNASDLHGYTVRALYRAVQTSIEQESLVRVAIWCIGEYGDMLVNNGGVLNIED----PITVTESDAVDVVEIAIKH-HSSDITTKAMAMVALLKLSSRFPSCS--ERIRDIIVQNKGSLVLELQQRSIEFNSIVEKHQNIRSTLVERMP 625
            EL+ +L+    E +G     I  +   F+P+K W+ D +L+V   AGNFV +      + +I++A +LH Y V  LY A++  + QE+L   A W IGEYG ML++    +N +D    P +V+ESD VD++E       +S        + AL KLS+R  S S   RI  II   K +   E+QQRS+EF+ I+     +  T++E  P
Sbjct:  412 ELLSFLDNVSDELRGSTAQYITEVTNAFAPNKRWHFDTLLRVFKSAGNFVSESTLSTFLRLIASAPELHEYAVVKLYAALKEDVSQEALTLSAFWVIGEYGQMLLS--PTMNFDDDQTLPHSVSESDIVDIIEEVFNSVEASRYIIVQYGLFALTKLSARLGSSSTASRIDKIIYSYKRNKNTEVQQRSVEFHLIL-NDSKLSKTILEPTP 619          
BLAST of DY271254 vs. ExPASy Swiss-Prot
Match: AP2A2_DICDI (AP-2 complex subunit alpha-2 OS=Dictyostelium discoideum GN=ap2a1-1 PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 7.723e-24
Identity = 51/212 (24.06%), Postives = 118/212 (55.66%), Query Frame = 2
Query:    5 LTIELIDYLEISDQEFKGDLTAKICSMVEKFSPDKIWYIDQMLKVLSEAGNFVKDEVWHALIVVISNASDLHGYTVRALYRAVQTSIEQESLVRVAIWCIGEYGDMLVNNGGVLNIEDPITVTESDAVDVVEIAIKHHSSDITTKAMAMVALLKLSSRFPSCSERIRDIIVQNKGSLVLELQQRSIEFNSIVEKHQNIRSTLVERMPVLDEA 640
            +  EL+ YL+ +D   + +L  KI ++ EKF+ +  WY+D +L++++ AG+FV D++W  ++ +++N  D+  Y    ++ A+Q+    E+L++V  + +GE+G ++ +N              S  V    +  K ++    TKA+ +    K  + FP  +++ +++  Q++  +  E+QQR+ E+ ++   ++++  T+++ +P   +A
Sbjct:  408 IVAELLSYLQTADYAIREELVIKIANLAEKFASNYSWYVDVILQLITTAGDFVSDDIWFRVVKIVTNHEDIQAYAASTVFNALQSRNCHETLIKVGGYILGEFGHLIADN-----------PQSSPLVQFNILHSKFNTCGAPTKALLLSTYAKFVNLFPELTQQTQEVFKQHQSYIDAEIQQRACEYLNLTSLNEDLMQTVLDVIPAFIDA 608          
BLAST of DY271254 vs. ExPASy Swiss-Prot
Match: AP2A2_RAT (AP-2 complex subunit alpha-2 OS=Rattus norvegicus GN=Ap2a2 PE=1 SV=3)

HSP 1 Score: 108.997 bits (271), Expect = 3.833e-23
Identity = 62/236 (26.27%), Postives = 121/236 (51.27%), Query Frame = 2
Query:    5 LTIELIDYLEISDQEFKGDLTAKICSMVEKFSPDKIWYIDQMLKVLSEAGNFVKDEVWHALIVVISNASDLHGYTVRALYRAVQTSIEQESLVRVAIWCIGEYGDMLVNNGGVLNIEDPITVTESDAVDVVEIAIKHHSSDITTKAMAMVALLKLSSRFPSCSERIRDIIVQNK--GSLVLELQQRSIEFNSI-VEKHQNIRSTLVERMPVLDEATFSGRRAGSLPATVSTSSGTS 703
            +  E++ YLE +D   + ++  K+  + EK++ D  WY+D +L ++  AG++V +EVW+ +I ++ N  D+ GY  + ++ A+Q     E+LV+V  + +GE+G+++          DP     S  +    +  K H   + T+A+ +   +K  + FP     I+D++  +    +  +ELQQR++E+  +      +I +T++E MP   E      R  S+ A +    G S
Sbjct:  404 IVAEMLSYLETADYSIREEIVLKVAILAEKYAVDYTWYVDTILNLIRIAGDYVSEEVWYRVIQIVINRDDVQGYAAKTVFEALQAPACHENLVKVGGYILGEFGNLIAG--------DP---RSSPLIQFNLLHSKFHLCSVPTRALLLSTYIKFVNLFPEVKATIQDVLRSDSQLKNADVELQQRAVEYLRLSTVASTDILATVLEEMPPFPE------RESSILAKLKKKKGPS 622          
The following BLAST results are available for this feature:
BLAST of DY271254 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
AP1G1_MOUSE2.309e-4437.96AP-1 complex subunit gamma-1 OS=Mus musculus GN=Ap... [more]
AP1G1_HUMAN2.309e-4437.96AP-1 complex subunit gamma-1 OS=Homo sapiens GN=AP... [more]
AP1G1_PONAB5.144e-4437.96AP-1 complex subunit gamma-1 OS=Pongo abelii GN=AP... [more]
AP1G_DICDI5.509e-3837.67AP-1 complex subunit gamma OS=Dictyostelium discoi... [more]
AP1G2_MOUSE1.149e-3537.68AP-1 complex subunit gamma-like 2 OS=Mus musculus ... [more]
AP1G2_HUMAN7.445e-3536.71AP-1 complex subunit gamma-like 2 OS=Homo sapiens ... [more]
AP1G1_USTMA8.232e-3438.21AP-1 complex subunit gamma-1 OS=Ustilago maydis GN... [more]
AP1G1_SCHPO4.837e-2635.07AP-1 complex subunit gamma-1 OS=Schizosaccharomyce... [more]
AP2A2_DICDI7.723e-2424.06AP-2 complex subunit alpha-2 OS=Dictyostelium disc... [more]
AP2A2_RAT3.833e-2326.27AP-2 complex subunit alpha-2 OS=Rattus norvegicus ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP9YF23FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY271254 ID=DY271254; Name=DY271254; organism=Citrus clementina; type=EST; length=902bp
GCCTTTAACAATAGAGCTAATTGATTATTTGGAAATAAGCGACCAAGAAT
TTAAGGGAGATCTTACTGCCAAAATTTGCTCCATGGTTGAAAAGTTTTCC
CCAGACAAAATTTGGTACATCGATCAGATGCTCAAGGTTCTCTCTGAGGC
TGGAAATTTTGTAAAAGATGAAGTATGGCATGCCCTTATTGTTGTGATAA
GCAATGCCTCTGATCTCCATGGTTATACAGTCAGGGCTCTTTATAGGGCA
GTTCAAACGTCTATTGAACAGGAGAGCCTTGTTCGAGTTGCTATTTGGTG
CATTGGAGAATATGGTGACATGCTGGTCAATAATGGTGGAGTGCTTAATA
TAGAGGATCCAATAACAGTGACAGAGTCTGATGCTGTGGATGTTGTAGAG
ATTGCTATTAAACATCATAGCTCAGATATCACTACTAAAGCAATGGCTAT
GGTTGCTCTTTTGAAGCTCTCTTCTCGTTTTCCATCTTGTTCAGAGAGGA
TAAGAGATATTATCGTCCAAAATAAGGGAAGCCTTGTGCTTGAGTTGCAG
CAGAGATCTATCGAGTTCAATTCCATTGTAGAGAAGCATCAGAATATTAG
GTCTACACTGGTTGAAAGGATGCCGGTATTGGATGAGGCAACCTTCAGTG
GAAGGAGGGCTGGTTCTTTGCCTGCAACAGTATCAACTTCAAGTGGCACT
TCACTTAACCTTCCCAATGGAGTTGCCAACCTGCTGCGGCTCCTCTTGTG
GACTTACTTGATCTAAGTTCAGATGATGCTCCTGTACCTAGCTCCTCTGG
GCATGATTTTCTTCAGGACTTCTTGGTGTAAAACTATCCCCTGCTTCGGT
GCAGCCCGGCACAAGCCAGGCTCCAAAAGCTGGGACAAAGGTTCTGCTGG
AT
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