DY271321

Overview
NameDY271321
Unique NameDY271321
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length952
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig62 contig Ccv1_Contig62:6..957. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY271321 vs. ExPASy Swiss-Prot
Match: UEV1B_ARATH (Ubiquitin-conjugating enzyme E2 variant 1B OS=Arabidopsis thaliana GN=UEV1B PE=1 SV=1)

HSP 1 Score: 254.218 bits (648), Expect = 7.944e-67
Identity = 118/159 (74.21%), Postives = 136/159 (85.53%), Query Frame = 3
Query:    9 MGSEGSSVVVPRNFRXXXXXXRGEKGIGDGTVSYGMDDADDILMQSWTGTIIGPPNTVHEGRIYQLKLFCGTDYPDNPPSVRFQTRINMTCVNQETGMVEPSLFPMLANWQREYTMEDILTQLKKEMMSPQNWKLAQPPEGNEDARMDHKGLVLKCCIL 485
            MGSE   VVVPRNFR      RGEKGIGDGTVSYGMDDADDILMQSWTGTI+GP NT +EG+I+QLKLFCG DYP++PP+VRFQ+RINM CVN E G+V+PS FPML+NW+RE+TMED+L QLKKEMMS QN KLAQP EGNE+ R D KGLV+KCC++
Sbjct:    1 MGSEEEKVVVPRNFRLLEELERGEKGIGDGTVSYGMDDADDILMQSWTGTILGPHNTAYEGKIFQLKLFCGKDYPESPPTVRFQSRINMACVNPENGVVDPSHFPMLSNWRREFTMEDLLIQLKKEMMSSQNRKLAQPLEGNEEGRTDPKGLVVKCCVM 159          
BLAST of DY271321 vs. ExPASy Swiss-Prot
Match: UEV1A_ARATH (Ubiquitin-conjugating enzyme E2 variant 1A OS=Arabidopsis thaliana GN=UEV1A PE=1 SV=1)

HSP 1 Score: 253.447 bits (646), Expect = 1.355e-66
Identity = 119/159 (74.84%), Postives = 135/159 (84.91%), Query Frame = 3
Query:    9 MGSEGSSVVVPRNFRXXXXXXRGEKGIGDGTVSYGMDDADDILMQSWTGTIIGPPNTVHEGRIYQLKLFCGTDYPDNPPSVRFQTRINMTCVNQETGMVEPSLFPMLANWQREYTMEDILTQLKKEMMSPQNWKLAQPPEGNEDARMDHKGLVLKCCIL 485
            M SE + VVVPRNFR      RGEKGIGDGTVSYGMDDADDI MQSWTGTI+GPPNT +EG+I+QLKLFCG +YP++PP+VRFQTRINM CVN ETG+VEPSLFPML NW+REYTMEDIL +LKKEMM+  N KLAQPPEGNE+AR D KG   KCC++
Sbjct:    1 MSSEEAKVVVPRNFRLLEELERGEKGIGDGTVSYGMDDADDIYMQSWTGTILGPPNTAYEGKIFQLKLFCGKEYPESPPTVRFQTRINMACVNPETGVVEPSLFPMLTNWRREYTMEDILVKLKKEMMTSHNRKLAQPPEGNEEARADPKG-PAKCCVM 158          
BLAST of DY271321 vs. ExPASy Swiss-Prot
Match: UEV1D_ARATH (Ubiquitin-conjugating enzyme E2 variant 1D OS=Arabidopsis thaliana GN=UEV1D PE=1 SV=1)

HSP 1 Score: 225.713 bits (574), Expect = 3.026e-58
Identity = 106/141 (75.18%), Postives = 116/141 (82.27%), Query Frame = 3
Query:    9 MGSEGSSVVVPRNFRXXXXXXRGEKGIGDGTVSYGMDDADDILMQSWTGTIIGPPNTVHEGRIYQLKLFCGTDYPDNPPSVRFQTRINMTCVNQETGMVEPSLFPMLANWQREYTMEDILTQLKKEMMSPQNWKLAQPPEG 431
            +GS GSSVVVPRNFR      RGEKGIGDGTVSYGMDD DDI M+SWTGTIIGP NTVHEGRIYQLKLFC  DYP+ PP+VRF +R+NM CVN ETG+V+P  F +LANWQREYTMEDIL QLKKEM +  N KL QPPEG
Sbjct:    3 LGSGGSSVVVPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPTVRFHSRVNMACVNHETGVVDPKKFGLLANWQREYTMEDILVQLKKEMSTSHNRKLVQPPEG 143          
BLAST of DY271321 vs. ExPASy Swiss-Prot
Match: UEV1C_ARATH (Ubiquitin-conjugating enzyme E2 variant 1C OS=Arabidopsis thaliana GN=UEV1C PE=1 SV=1)

HSP 1 Score: 220.32 bits (560), Expect = 1.271e-56
Identity = 104/137 (75.91%), Postives = 114/137 (83.21%), Query Frame = 3
Query:   21 GSSVVVPRNFRXXXXXXRGEKGIGDGTVSYGMDDADDILMQSWTGTIIGPPNTVHEGRIYQLKLFCGTDYPDNPPSVRFQTRINMTCVNQETGMVEPSLFPMLANWQREYTMEDILTQLKKEMMSPQNWKLAQPPEG 431
            GSSVVVPRNFR      RGEKGIGDGTVSYGMDD DDI M+SWTGTIIGP NTVHEGRIYQLKLFC  DYP+ PP+VRF +RINMTCVN +TG+V+   F +LANWQR+YTMEDILTQLKKEM +  N KL QPPEG
Sbjct:    6 GSSVVVPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPTVRFHSRINMTCVNHDTGVVDSKKFGVLANWQRQYTMEDILTQLKKEMAASHNRKLVQPPEG 142          
BLAST of DY271321 vs. ExPASy Swiss-Prot
Match: UB2V1_HUMAN (Ubiquitin-conjugating enzyme E2 variant 1 OS=Homo sapiens GN=UBE2V1 PE=1 SV=2)

HSP 1 Score: 160.614 bits (405), Expect = 1.195e-38
Identity = 72/137 (52.55%), Postives = 96/137 (70.07%), Query Frame = 3
Query:   21 GSSVVVPRNFRXXXXXXRGEKGIGDGTVSYGMDDADDILMQSWTGTIIGPPNTVHEGRIYQLKLFCGTDYPDNPPSVRFQTRINMTCVNQETGMVEPSLFPMLANWQREYTMEDILTQLKKEMMSPQNWKLAQPPEG 431
            GS V VPRNFR       G+KG+GDGTVS+G++D +D+ +  WTG IIGPP T++E RIY LK+ CG  YP+ PP VRF T+INM  VN   G+V+P    +LA WQ  Y+++ +L +L++ MMS +N KL QPPEG
Sbjct:    6 GSGVKVPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKINMNGVNSSNGVVDPRAISVLAKWQNSYSIKVVLQELRRLMMSKENMKLPQPPEG 142          
BLAST of DY271321 vs. ExPASy Swiss-Prot
Match: UB2V1_BOVIN (Ubiquitin-conjugating enzyme E2 variant 1 OS=Bos taurus GN=UBE2V1 PE=2 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 1.195e-38
Identity = 72/137 (52.55%), Postives = 96/137 (70.07%), Query Frame = 3
Query:   21 GSSVVVPRNFRXXXXXXRGEKGIGDGTVSYGMDDADDILMQSWTGTIIGPPNTVHEGRIYQLKLFCGTDYPDNPPSVRFQTRINMTCVNQETGMVEPSLFPMLANWQREYTMEDILTQLKKEMMSPQNWKLAQPPEG 431
            GS V VPRNFR       G+KG+GDGTVS+G++D +D+ +  WTG IIGPP T++E RIY LK+ CG  YP+ PP VRF T+INM  VN   G+V+P    +LA WQ  Y+++ +L +L++ MMS +N KL QPPEG
Sbjct:    6 GSGVKVPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKINMNGVNSSNGVVDPRAISVLAKWQNSYSIKVVLQELRRLMMSKENMKLPQPPEG 142          
BLAST of DY271321 vs. ExPASy Swiss-Prot
Match: UB2V2_CHICK (Ubiquitin-conjugating enzyme E2 variant 2 OS=Gallus gallus GN=UBE2V2 PE=2 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 1.561e-38
Identity = 72/137 (52.55%), Postives = 97/137 (70.80%), Query Frame = 3
Query:   21 GSSVVVPRNFRXXXXXXRGEKGIGDGTVSYGMDDADDILMQSWTGTIIGPPNTVHEGRIYQLKLFCGTDYPDNPPSVRFQTRINMTCVNQETGMVEPSLFPMLANWQREYTMEDILTQLKKEMMSPQNWKLAQPPEG 431
            GS+V VPRNFR       G+KG+GDGTVS+G++D +D+ +  WTG IIGPP T +E RIY LK+ CG  YP+ PP+VRF T+INM  +N   GMV+    P+LA WQ  Y+++ +L +L++ MMS +N KL QPPEG
Sbjct:    3 GSTVKVPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTNYENRIYSLKVECGPKYPEAPPTVRFVTKINMNGINNSNGMVDARSIPVLAKWQNSYSIKVVLQELRRLMMSKENMKLPQPPEG 139          
BLAST of DY271321 vs. ExPASy Swiss-Prot
Match: UB2V1_MOUSE (Ubiquitin-conjugating enzyme E2 variant 1 OS=Mus musculus GN=Ube2v1 PE=1 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 2.039e-38
Identity = 72/137 (52.55%), Postives = 98/137 (71.53%), Query Frame = 3
Query:   21 GSSVVVPRNFRXXXXXXRGEKGIGDGTVSYGMDDADDILMQSWTGTIIGPPNTVHEGRIYQLKLFCGTDYPDNPPSVRFQTRINMTCVNQETGMVEPSLFPMLANWQREYTMEDILTQLKKEMMSPQNWKLAQPPEG 431
            GS V VPRNFR       G+KG+GDGTVS+G++D +D+ +  WTG IIGPP T++E RIY LK+ CG  YP+ PPSVRF TR+NM+ V+   G+V+P    +LA WQ  ++++ IL +L++ MMS +N KL QPPEG
Sbjct:    6 GSGVKVPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPSVRFVTRVNMSGVSSSNGVVDPRATAVLAKWQNSHSIKVILQELRRLMMSKENMKLPQPPEG 142          
BLAST of DY271321 vs. ExPASy Swiss-Prot
Match: UBE2V_DICDI (Probable ubiquitin-conjugating enzyme E2 variant OS=Dictyostelium discoideum GN=ube2v PE=3 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 2.663e-38
Identity = 70/132 (53.03%), Postives = 94/132 (71.21%), Query Frame = 3
Query:   36 VPRNFRXXXXXXRGEKGIGDGTVSYGMDDADDILMQSWTGTIIGPPNTVHEGRIYQLKLFCGTDYPDNPPSVRFQTRINMTCVNQETGMVEPSLFPMLANWQREYTMEDILTQLKKEMMSPQNWKLAQPPEG 431
            +PRNF        GEK  GDGT+SYG++  DDIL+ SW GTIIGP NT  + R Y LKL+C  DYP+ PP+VRF T+IN+ CVNQ+ G+V+P   P+L+NW  +  +++IL++L++EM S  N KL QPPEG
Sbjct:    4 IPRNFVLLEELESGEKSTGDGTISYGLESPDDILLSSWIGTIIGPQNTPFDNRFYSLKLYCDKDYPNKPPTVRFTTKINIGCVNQQNGVVDPKNLPILSNWTSKNRIQNILSELRREMSSSSNKKLVQPPEG 135          
BLAST of DY271321 vs. ExPASy Swiss-Prot
Match: UB2V2_MOUSE (Ubiquitin-conjugating enzyme E2 variant 2 OS=Mus musculus GN=Ube2v2 PE=2 SV=4)

HSP 1 Score: 159.073 bits (401), Expect = 3.478e-38
Identity = 72/136 (52.94%), Postives = 97/136 (71.32%), Query Frame = 3
Query:   24 SSVVVPRNFRXXXXXXRGEKGIGDGTVSYGMDDADDILMQSWTGTIIGPPNTVHEGRIYQLKLFCGTDYPDNPPSVRFQTRINMTCVNQETGMVEPSLFPMLANWQREYTMEDILTQLKKEMMSPQNWKLAQPPEG 431
            + V VPRNFR       G+KG+GDGTVS+G++D +D+ +  WTG IIGPP T +E RIY LK+ CG+ YP+ PPSVRF T+INM  +N  +GMV+    P+LA WQ  Y+++ IL +L++ MMS +N KL QPPEG
Sbjct:    5 TGVKVPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTNYENRIYSLKVECGSKYPEAPPSVRFVTKINMNGINNSSGMVDARSIPVLAKWQNSYSIKVILQELRRLMMSKENMKLPQPPEG 140          
The following BLAST results are available for this feature:
BLAST of DY271321 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
UEV1B_ARATH7.944e-6774.21Ubiquitin-conjugating enzyme E2 variant 1B OS=Arab... [more]
UEV1A_ARATH1.355e-6674.84Ubiquitin-conjugating enzyme E2 variant 1A OS=Arab... [more]
UEV1D_ARATH3.026e-5875.18Ubiquitin-conjugating enzyme E2 variant 1D OS=Arab... [more]
UEV1C_ARATH1.271e-5675.91Ubiquitin-conjugating enzyme E2 variant 1C OS=Arab... [more]
UB2V1_HUMAN1.195e-3852.55Ubiquitin-conjugating enzyme E2 variant 1 OS=Homo ... [more]
UB2V1_BOVIN1.195e-3852.55Ubiquitin-conjugating enzyme E2 variant 1 OS=Bos t... [more]
UB2V2_CHICK1.561e-3852.55Ubiquitin-conjugating enzyme E2 variant 2 OS=Gallu... [more]
UB2V1_MOUSE2.039e-3852.55Ubiquitin-conjugating enzyme E2 variant 1 OS=Mus m... [more]
UBE2V_DICDI2.663e-3853.03Probable ubiquitin-conjugating enzyme E2 variant O... [more]
UB2V2_MOUSE3.478e-3852.94Ubiquitin-conjugating enzyme E2 variant 2 OS=Mus m... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP9YJ14FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY271321 ID=DY271321; Name=DY271321; organism=Citrus clementina; type=EST; length=952bp
TTCAGAAAATGGGCTCTGAAGGATCATCAGTCGTCGTGCCTAGGAATTTC
AGATTATTGGAAGAGCTTGAGAGGGGGGAAAAGGGAATTGGTGATGGAAC
TGTCAGCTATGGAATGGATGATGCTGATGACATATTAATGCAATCATGGA
CTGGGACAATTATAGGTCCCCCTAATACTGTTCATGAAGGACGTATCTAC
CAGTTGAAACTTTTCTGTGGCACGGATTATCCGGACAATCCACCAAGTGT
AAGGTTTCAGACCCGGATAAACATGACCTGTGTCAATCAGGAGACAGGAA
TGGTTGAACCAAGTCTTTTCCCTATGCTTGCCAATTGGCAAAGGGAGTAT
ACAATGGAGGACATATTGACTCAACTGAAGAAAGAAATGATGTCTCCACA
AAACTGGAAGCTTGCTCAACCTCCTGAAGGTAATGAAGATGCAAGGATGG
ATCACAAGGGGTTGGTGCTGAAGTGTTGTATCCTCTAAGCCAACTGCGAT
ATGTATGAACATGGTAATGTATGTATATAATTATATGAATTAGATTATTC
CAACTGCTGCTGGTTTAGTTCCCATGAAATATATATTCATGTCTGAGAAA
GTTGTCTTTACTTCCATCAAATGGTGGCTAAATAATAATGTACCCTCTGT
GAATCAACGATGTGCCCAAAATCCTGGGATTTGTTGTGCCCTGAATCAAT
ACTTGGGCGTGGATTAACACACTTTTGACTAAAAAAAAAAAAAAAAAAAA
CCCAACCTTTCTGTACAAAGTTTGGCATTTAAAAAAACCTTTCTTTACCA
TTTTGTTGCACCGAACGGGTCCCTTTCCGTCCAAATAAAATCTTTTTTTT
TGCCCCCCGCCGGAATCCCCCCAAAAGGGAGTCCTAATTAATGGGGTCAT
ACTGGTTTCCCGGGGCCCCTCCGGCCCCTTTTCTAAAAAATCCCGTGAAT
TT
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