DY271322

Overview
NameDY271322
Unique NameDY271322
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1118
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig3890 contig Ccv1_Contig3890:1..1118. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY271322 vs. ExPASy Swiss-Prot
Match: KEULE_ARATH (SNARE-interacting protein KEULE OS=Arabidopsis thaliana GN=KEU PE=1 SV=2)

HSP 1 Score: 296.204 bits (757), Expect = 2.298e-79
Identity = 166/241 (68.88%), Postives = 187/241 (77.59%), Query Frame = 3
Query:  162 KNFKQITRERLLYEMLRSAKTGKSKSTWKVLIMDRLTVKIMSYACKMADITQEGVSLVEDLYRRRQPLPSMEAIYFIQPTKENVVAFLSDMSGKSPLYKKAFVFFSSPISRELVTHIKKDSTVLPRIGALREMNLEYFAVDSQGFVTDDERALEELFGDEESFSKKLMHA*M*WLPRIANSFLLL*RNFLWGR*QAAKIT*CKEKKQLSLNSFPPKIALPKFGTGPYKKHINLFTNFPKAK 884
            KNF+QITRERLLYEMLRSAKTG SKSTWKVLIMD+LTVKIMSYACKMADITQEGVSLVED++RRRQPLPSM+AIYFIQPTKENV+ FLSDMSGKSPLYKKAFVFFSSP+S+ELV HIKKDS+VLPRIGALREMNLE+FA+DSQGF+TD ERALE+LFGDEE+ S+K          RIA  F  L R F   R +AAK         L  +  P K+A   +      KH     NFP+ +
Sbjct:   16 KNFRQITRERLLYEMLRSAKTGSSKSTWKVLIMDKLTVKIMSYACKMADITQEGVSLVEDIFRRRQPLPSMDAIYFIQPTKENVIMFLSDMSGKSPLYKKAFVFFSSPVSKELVGHIKKDSSVLPRIGALREMNLEFFAIDSQGFITDHERALEDLFGDEET-SRKGDACLNVMASRIATVFASL-REFPAVRYRAAKSLDASTMTTLR-DLIPTKLAAGIWNC--LAKHKQSIENFPQTE 251          
BLAST of DY271322 vs. ExPASy Swiss-Prot
Match: SEC1B_ARATH (Protein transport Sec1b OS=Arabidopsis thaliana GN=SEC1B PE=2 SV=2)

HSP 1 Score: 229.565 bits (584), Expect = 1.880e-64
Identity = 113/165 (68.48%), Postives = 136/165 (82.42%), Query Frame = 3
Query:  162 KNFKQITRERLLYEMLRSAKTGKSKSTWKVLIMDRLTVKIMSYACKMADITQEGVSLVEDLYRRRQPLPSMEAIYFIQPTKENVVAFLSDMSGKSPLYKKAFVFFSSPISRELVTHIKKDSTVLPRIGALREMNLEYFAVDSQGFVTDDERALEELFGDEESFSK 656
            KNF+QITRERLL EMLR  + G SK TWKVL+MD+ TVKIMS ACKM++ITQ G+SLVE + + RQP+ +ME IYFIQPT+ENV AFLSDM+GKSPLYKKAFVFFSSP+SR LV  IKKD   + RIG L+EMNLEY ++D QGFVT++E ALEELF D+E+  +
Sbjct:   16 KNFRQITRERLLCEMLRPERNGSSKLTWKVLVMDKFTVKIMSSACKMSEITQGGISLVEVITKHRQPMTAMEVIYFIQPTEENVTAFLSDMTGKSPLYKKAFVFFSSPVSRSLVNVIKKDMRAMKRIGGLKEMNLEYISMDIQGFVTNNENALEELFCDDENHQR 180          

HSP 2 Score: 38.891 bits (89), Expect = 1.880e-64
Identity = 26/60 (43.33%), Postives = 34/60 (56.67%), Query Frame = 2
Query:  653 KKADACLNVMATPHC*QFFASLKEFPLGALTSCQNHLMQRKKTTFLELLPTKDCAAEIWN 832
            ++ADACLNV+A        ASLKE+P       +  L     TT+ EL+PTK  AA +WN
Sbjct:  179 QRADACLNVVA-KRIATVLASLKEYPFVRYRGAK-ALDATTMTTYRELIPTK-LAASVWN 235          
BLAST of DY271322 vs. ExPASy Swiss-Prot
Match: SEC1A_ORYSJ (Probable protein transport Sec1a OS=Oryza sativa subsp. japonica GN=Os04g0252400 PE=3 SV=2)

HSP 1 Score: 242.276 bits (617), Expect = 3.938e-63
Identity = 121/166 (72.89%), Postives = 140/166 (84.34%), Query Frame = 3
Query:  162 KNFKQITRERLLYEMLRSAKTGKSKSTWKVLIMDRLTVKIMSYACKMADITQEGVSLVEDLYRRRQPLPSMEAIYFIQPTKENVVAFLSDMSGKSPLYKKAFVFFSSPISRELVTHIKKDSTVLPRIGALREMNLEYFAVDSQGFVTDDERALEELFGDEESFSKK 659
            ++F+QITR+RLL+EMLRS K   SKS WKVLIMD+LTVKIMS++CKMAD+ +EGVSLVEDLY RRQPLP M+AIYFIQPTKEN+  F+SDMSGK PLYKKA+VFFSSP+ RELV  IKKDS V  RIGAL EMNLEYFA+DSQGF TD ++ALEELF +    S K
Sbjct:   16 RSFRQITRDRLLFEMLRSTKKS-SKSAWKVLIMDKLTVKIMSFSCKMADVMEEGVSLVEDLYMRRQPLPLMDAIYFIQPTKENIRIFMSDMSGKIPLYKKAYVFFSSPVQRELVAQIKKDSNVRARIGALSEMNLEYFAIDSQGFTTDHDKALEELFSENAEGSLK 180          
BLAST of DY271322 vs. ExPASy Swiss-Prot
Match: SEC1A_ARATH (Protein transport Sec1a OS=Arabidopsis thaliana GN=SEC1A PE=2 SV=3)

HSP 1 Score: 236.498 bits (602), Expect = 2.161e-61
Identity = 121/200 (60.50%), Postives = 157/200 (78.50%), Query Frame = 3
Query:  162 KNFKQITRERLLYEMLRSAKTGKSKSTWKVLIMDRLTVKIMSYACKMADITQEGVSLVEDLYRRRQPLPSMEAIYFIQPTKENVVAFLSDMSGKSPLYKKAFVFFSSPISRELVTHIKKDSTVLPRIGALREMNLEYFAVDSQGFVTDDERALEELFGDEESFSKKLMHA*M*WLPRIANSFLLL*RNFLWGR*QAAKIT 761
            K F+QI+R+RLL+EML S KTG SK+ WK+LIMDR+TVK+MS +CKMADIT +G+SLVE+L++RR+P+P M+AIYFIQP+KEN+V FLSDMSG+ PLY+KAF+FFSS I +ELV HIK DS+VLPRIGALREMN+EYF +D+QGF+TD E+ALE L+ ++   S+           RIA  F  L +   + R +AAK T
Sbjct:   19 KFFRQISRDRLLHEMLGSTKTGDSKA-WKILIMDRVTVKVMSQSCKMADITDQGISLVEELFKRREPMPGMDAIYFIQPSKENIVMFLSDMSGREPLYRKAFIFFSSTIPKELVNHIKSDSSVLPRIGALREMNMEYFPIDNQGFLTDHEQALETLYAEDAENSRHFHICLNIMATRIATVFASL-KELPFVRYRAAKST 216          
BLAST of DY271322 vs. ExPASy Swiss-Prot
Match: SEC1B_ORYSJ (Probable protein transport Sec1b OS=Oryza sativa subsp. japonica GN=Os06g0135900 PE=2 SV=1)

HSP 1 Score: 220.32 bits (560), Expect = 1.602e-56
Identity = 107/185 (57.84%), Postives = 145/185 (78.38%), Query Frame = 3
Query:  162 KNFKQITRERLLYEMLRSAKTGKSKSTWKVLIMDRLTVKIMSYACKMADITQEGVSLVEDLYRRRQPLPSMEAIYFIQPTKENVVAFLSDMSGKSPLYKKAFVFFSSPISRELVTHIKKDSTVLPRIGALREMNLEYFAVDSQGFVTDDERALEELFGDEESFSKKLMHA*M*WLPRIANSFLLL 716
            K F+ I R+R+L ++L+  K  ++KS+WKVLIMD+ TV+IM+YACKMA+IT  G+SLVEDL++RR+P+PSM+AIYF+QP KENV+  LSDMSG+ PLY+KA++FFSSPI +ELV++IK DS+V+PRIGALREMNLE+FA+D QGF TD + A  +L+  + + SKK          RIA +F  L
Sbjct:   16 KIFRNICRDRILKDLLQPDKDKETKSSWKVLIMDKFTVRIMAYACKMAEITDAGISLVEDLFKRREPMPSMDAIYFLQPLKENVIMLLSDMSGRCPLYRKAYIFFSSPIPKELVSYIKNDSSVIPRIGALREMNLEFFAIDMQGFTTDHDMAFTDLYSAQHN-SKKFNDTISTMATRIATTFASL 199          
BLAST of DY271322 vs. ExPASy Swiss-Prot
Match: UNC18_CAEEL (Putative acetylcholine regulator unc-18 OS=Caenorhabditis elegans GN=unc-18 PE=2 SV=3)

HSP 1 Score: 107.071 bits (266), Expect = 1.977e-22
Identity = 56/139 (40.29%), Postives = 89/139 (64.03%), Query Frame = 3
Query:  189 RLLYEMLRSAKTGKSKSTWKVLIMDRLTVKIMSYACKMADITQEGVSLVEDLYRRRQPLPSMEAIYFIQPTKENVVAFLSDMSGKSPLYKKAFVFFSSPISRELVTHIKKDSTVLPRIGALREMNLEYFAVDSQGFVTD 605
            +LL +++R  K G  +S W VLI+D L ++++S  CKM +I +EG+++VEDL +RR+PLP++EAIY I PT E++   + D   ++ LYK A VFF+   S +L + + K S     I  L+E+N+ +   +SQ F  D
Sbjct:   92 KLLNDVIRPLKKGDGRSAWNVLIVDTLAMRMLSSCCKMHNIMEEGITIVEDLNKRREPLPTLEAIYLIAPTAESIDKLIQDYCARN-LYKCAHVFFTEACSDQLFSTLSK-SAAARFIKTLKEINIAFTPYESQVFNLD 228          
BLAST of DY271322 vs. ExPASy Swiss-Prot
Match: STXB2_CANFA (Syntaxin-binding protein 2 OS=Canis familiaris GN=STXBP2 PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 4.405e-22
Identity = 55/155 (35.48%), Postives = 94/155 (60.65%), Query Frame = 3
Query:  171 KQITRERLLYEMLRSAKTGKSKSTWKVLIMDRLTVKIMSYACKMADITQEGVSLVEDLYRRRQPLPSMEAIYFIQPTKENVVAFLSDMSGKSPL-YKKAFVFFSSPISRELVTHIKKDSTVLPRIGALREMNLEYFAVDSQGFVTDDERALEELF 632
            K++  E++L  ++RS K       WKVLIMD  +++I+S  CKM+DI  EG+++VED+ +RR+P+PS+EAIY + PT+++V A ++D  G     YK A +FF+      L T + + S +   +  L+E++L +   ++Q F  D   +   L+
Sbjct:    7 KEVVGEKILNGVIRSVK---KDGEWKVLIMDHPSMRILSSCCKMSDILAEGITIVEDINKRREPIPSLEAIYLLSPTEKSVQALIADFRGTPTFTYKAAHIFFTDTCPEPLFTELSR-SRLAKVVKTLKEIHLAFLPYEAQVFSLDAPHSTYNLY 157          
BLAST of DY271322 vs. ExPASy Swiss-Prot
Match: STXB2_MOUSE (Syntaxin-binding protein 2 OS=Mus musculus GN=Stxbp2 PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 2.186e-21
Identity = 54/155 (34.84%), Postives = 93/155 (60.00%), Query Frame = 3
Query:  171 KQITRERLLYEMLRSAKTGKSKSTWKVLIMDRLTVKIMSYACKMADITQEGVSLVEDLYRRRQPLPSMEAIYFIQPTKENVVAFLSDMSGKSPL-YKKAFVFFSSPISRELVTHIKKDSTVLPRIGALREMNLEYFAVDSQGFVTDDERALEELF 632
            K +  E++L  ++RS K       WKVLIMD  +++I+S  CKM+DI  EG+++VED+ +RR+P+PS+EAIY + PT+++V A ++D  G     YK A +FF+      L + + + S +   +  L+E++L +   ++Q F  D   +   L+
Sbjct:    7 KAVVGEKILSGVIRSVK---KDGEWKVLIMDHPSMRILSSCCKMSDILAEGITIVEDINKRREPIPSLEAIYLLSPTEKSVQALIADFQGTPTFTYKAAHIFFTDTCPEPLFSELGR-SRLAKAVKTLKEIHLAFLPYEAQVFSLDAPHSTYNLY 157          
BLAST of DY271322 vs. ExPASy Swiss-Prot
Match: STXB2_RAT (Syntaxin-binding protein 2 OS=Rattus norvegicus GN=Stxbp2 PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 4.870e-21
Identity = 54/155 (34.84%), Postives = 93/155 (60.00%), Query Frame = 3
Query:  171 KQITRERLLYEMLRSAKTGKSKSTWKVLIMDRLTVKIMSYACKMADITQEGVSLVEDLYRRRQPLPSMEAIYFIQPTKENVVAFLSDMSGKSPL-YKKAFVFFSSPISRELVTHIKKDSTVLPRIGALREMNLEYFAVDSQGFVTDDERALEELF 632
            K +  E++L  ++RS K       WKVLIMD  +++I+S  CKM+DI  EG+++VED+ +RR+P+PS+EAIY + PT+++V A ++D  G     YK A +FF+      L + + + S +   +  L+E++L +   ++Q F  D   +   L+
Sbjct:    7 KAVVVEKILSGVIRSVK---KDGEWKVLIMDHPSMRILSSCCKMSDILAEGITIVEDINKRREPIPSLEAIYLLSPTEKSVQALIADFQGTPTFTYKAAHIFFTDTCPEPLFSELGR-SRLAKVVKTLKEIHLAFLPYEAQVFSLDAPHSTYNLY 157          
BLAST of DY271322 vs. ExPASy Swiss-Prot
Match: STXB2_HUMAN (Syntaxin-binding protein 2 OS=Homo sapiens GN=STXBP2 PE=1 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 4.870e-21
Identity = 54/155 (34.84%), Postives = 92/155 (59.35%), Query Frame = 3
Query:  171 KQITRERLLYEMLRSAKTGKSKSTWKVLIMDRLTVKIMSYACKMADITQEGVSLVEDLYRRRQPLPSMEAIYFIQPTKENVVAFLSDMSGKSPL-YKKAFVFFSSPISRELVTHIKKDSTVLPRIGALREMNLEYFAVDSQGFVTDDERALEELF 632
            K +  E++L  ++RS K       WKVLIMD  +++I+S  CKM+DI  EG+++VED+ +RR+P+PS+EAIY + PT+++V A + D  G     YK A +FF+      L + + + S +   +  L+E++L +   ++Q F  D   +   L+
Sbjct:    7 KAVVGEKILSGVIRSVK---KDGEWKVLIMDHPSMRILSSCCKMSDILAEGITIVEDINKRREPIPSLEAIYLLSPTEKSVQALIKDFQGTPTFTYKAAHIFFTDTCPEPLFSELGR-SRLAKVVKTLKEIHLAFLPYEAQVFSLDAPHSTYNLY 157          
The following BLAST results are available for this feature:
BLAST of DY271322 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
KEULE_ARATH2.298e-7968.88SNARE-interacting protein KEULE OS=Arabidopsis tha... [more]
SEC1B_ARATH1.880e-6468.48Protein transport Sec1b OS=Arabidopsis thaliana GN... [more]
SEC1A_ORYSJ3.938e-6372.89Probable protein transport Sec1a OS=Oryza sativa s... [more]
SEC1A_ARATH2.161e-6160.50Protein transport Sec1a OS=Arabidopsis thaliana GN... [more]
SEC1B_ORYSJ1.602e-5657.84Probable protein transport Sec1b OS=Oryza sativa s... [more]
UNC18_CAEEL1.977e-2240.29Putative acetylcholine regulator unc-18 OS=Caenorh... [more]
STXB2_CANFA4.405e-2235.48Syntaxin-binding protein 2 OS=Canis familiaris GN=... [more]
STXB2_MOUSE2.186e-2134.84Syntaxin-binding protein 2 OS=Mus musculus GN=Stxb... [more]
STXB2_RAT4.870e-2134.84Syntaxin-binding protein 2 OS=Rattus norvegicus GN... [more]
STXB2_HUMAN4.870e-2134.84Syntaxin-binding protein 2 OS=Homo sapiens GN=STXB... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP9YJ15FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY271322 ID=DY271322; Name=DY271322; organism=Citrus clementina; type=EST; length=1118bp
GATTATTTTTGTTTGAGCTTGTTTCGATTTCGATCTTTCTTGTTCAAATG
CTTCTTGTAAATAAACAAACGATCTCTTAATTCTTGATTTTTAAACCTTG
AAAGTCCTGAAGAACGATGTCGTATTCGGATTCTGACTCTTCATCATACG
GTGGTGATTACAAAAATTTCAAACAAATCACCCGTGAAAGGTTGTTGTAT
GAAATGCTTCGCTCCGCAAAAACTGGCAAATCAAAATCAACCTGGAAGGT
GCTTATAATGGACAGGCTTACTGTTAAGATAATGTCGTACGCGTGCAAGA
TGGCTGACATTACACAGGAAGGCGTTTCATTGGTAGAAGACTTGTACAGA
CGAAGGCAGCCACTGCCTTCAATGGAAGCCATCTACTTCATCCAACCAAC
TAAAGAGAACGTTGTTGCGTTCTTGTCAGACATGTCAGGAAAATCACCTT
TATATAAGAAGGCGTTTGTTTTCTTCAGTTCACCTATTTCAAGAGAATTG
GTGACTCACATCAAGAAGGATTCAACCGTGTTACCTCGCATAGGTGCATT
GAGAGAGATGAATTTGGAATATTTTGCCGTAGACAGCCAGGGTTTTGTCA
CTGATGATGAAAGGGCCTTGGAGGAACTTTTTGGTGATGAGGAAAGTTTC
TCAAAAAAGCTGATGCATGCCTGAATGTGATGGCTACCCCGCATTGCTAA
CAGTTTTTTGCTTCTTTGAAGGAATTTCCTTTGGGGGCGCTAACAAGCTG
CCAAAATCACTTGATGCAAAGAAAAAAAACAACTTTCCTTGAACTCCTTC
CCACCAAAGATTGCGCTGCCGAAATTTGGAACCGGCCCTTATAAAAAACA
CATAAACCTATTCACAAATTTTCCTAAGGCCAAAAACACCAACAAATTTA
CTCACCCATTAACTCTATCTTTTTGACCCATCTCCCCTCCTCCTAAAACC
GGCTTCGGAACTTTTGCTCGCCCTTTTTTCCATTGCATCTATACTCCATC
TTCACAGGTCTATACAATCCATTCCCTCTCGTTTTCTATCCACATACCAC
TCAACCTCCCCCACGCGCGAAAAAACCACTCAATTTTATTTAGAAATACA
AAGACAGCAAAATCAATC
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