DY271325

Overview
NameDY271325
Unique NameDY271325
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length945
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY271325_ssr7 microsatellite DY271325_ssr7:7..18. BLAST: Citrus ESTs to Prunus persica proteins V1
DY271325_ssr272 microsatellite DY271325_ssr272:272..299. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of DY271325 vs. ExPASy Swiss-Prot
Match: P2A01_ARATH (Protein PHLOEM PROTEIN 2-LIKE A1 OS=Arabidopsis thaliana GN=PP2A1 PE=2 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 1.450e-28
Identity = 60/150 (40.00%), Postives = 96/150 (64.00%), Query Frame = 3
Query:  303 KTWIDNKTGYKCFVLYPRSLFVTWGNR-DHWTWNCFKETSDENIEVVKLSHVCWMDVRGKFKISELSPGVMYEIVYVVKLTNAAFGWEAPVSLKLSLP-ADGKVQNRQVTLLEKPRGEWFELCVGNFLTETNNDGSQKYGWRFSLNFFEH 746
            K W+D +    CF+L+ ++L +TW +  ++WTW   KE+ +EN+E V L +VCW+D+ GKF    L+PG++YE+V+ VKL + A+GW+ PV+LKL LP    K Q ++V+L E PR +W ++ VG F+ E +  G        + + +EH
Sbjct:   84 KYWVDERNS-NCFMLFAKNLSITWSDDVNYWTWFTEKESPNENVEAVGLKNVCWLDITGKFDTRNLTPGIVYEVVFKVKLEDPAYGWDTPVNLKLVLPNGKEKPQEKKVSLRELPRYKWVDVRVGEFVPEKSAAG------EITFSMYEH 226          
BLAST of DY271325 vs. ExPASy Swiss-Prot
Match: P2A04_ARATH (Uncharacterized protein PHLOEM PROTEIN 2-LIKE A4 OS=Arabidopsis thaliana GN=PP2A4 PE=4 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 4.675e-19
Identity = 50/125 (40.00%), Postives = 74/125 (59.20%), Query Frame = 3
Query:  342 VLYPRSLFVTWGNRD-HWTWNCFKE--TSDENIEVVKLSHVCWMDVRGKFKISELSPGVMYEIVYVVKLTNAAFGWEAPVSLKLSLPADGK--VQNRQVTLLEKPRGEWFELCVGNFLTETNNDG 701
            ++Y R L + W ++D +W+W   +   +S++ ++   L  VCW+DV GKF   EL+    YE+VYVVKL + A GW  PV+LKL+LP DGK   Q R + L E     W ++  G F+T  +N G
Sbjct:   13 MIYARDLSIAWSDKDEYWSWLPLRYDISSEKLVDAAVLEAVCWLDVNGKFDTRELTLETTYEVVYVVKLEDTASGWNIPVNLKLTLP-DGKKRPQERSMCLKEHIGKRWIDISAGEFVTSPDNAG 136          
BLAST of DY271325 vs. ExPASy Swiss-Prot
Match: P2A05_ARATH (Protein PHLOEM PROTEIN 2-LIKE A5 OS=Arabidopsis thaliana GN=PP2A5 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 5.349e-15
Identity = 54/157 (34.39%), Postives = 77/157 (49.04%), Query Frame = 3
Query:  303 KTWID-NKTGYKCFVLYPRSLFVTWG-NRDHWTWNCF-KETSDENI-EVVKLSHVCWMDVRGKFKISELSPGVMYEIVYVVKLTNAAFGWEAPVSLKLSLPAD-GKVQNRQVTLLEKPRGEWFELCVGNFLTETNNDGSQKYGWRFSLNFFEHGRQL 758
            K W+D  +     F++  R L + W  + +HWTW     + S+E++ E+  L    W+DV GKF    L+P   YE+V+VVKL    F WE  V LKL LP    K Q + V + +    +W ++ VG F T   N G        S   +EH  QL
Sbjct:  246 KFWVDLTRPKGNVFMIDARDLSIAWSEDSNHWTWLPLPNQNSNESVMEIAFLKSASWLDVAGKFDTRYLTPRTRYEVVFVVKL-EYTFEWETLVKLKLDLPNTWEKPQEQSVDMFDYISDQWLDIPVGEFTTSKKNVG------EISFAMYEHECQL 395          
BLAST of DY271325 vs. ExPASy Swiss-Prot
Match: P2A02_ARATH (Protein PHLOEM PROTEIN 2-LIKE A2 OS=Arabidopsis thaliana GN=PP2A2 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 8.540e-13
Identity = 38/89 (42.70%), Postives = 56/89 (62.92%), Query Frame = 3
Query:  417 SDENIEVVKLSHVCWMDVRGKFKISELSPGVMYEIVYVVKLTNAAFGWEAPVSLKLSLP-ADGKVQNRQVTLLEKPRGEWFELCVGNFL 680
            SD   EV K+  V W++V GKF+  +L+P  +YE+V+VVKL ++A GW+  V+ KL LP  + K +   V LLE  R +W E+  G F+
Sbjct:   71 SDVRTEVAKMERVAWLEVVGKFETEKLTPNSLYEVVFVVKLIDSAKGWDFRVNFKLVLPTGETKERRENVNLLE--RNKWVEIPAGEFM 157          
BLAST of DY271325 vs. ExPASy Swiss-Prot
Match: P2A07_ARATH (Uncharacterized protein PHLOEM PROTEIN 2-LIKE A7 OS=Arabidopsis thaliana GN=PP2A7 PE=4 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 4.238e-12
Identity = 46/133 (34.59%), Postives = 72/133 (54.14%), Query Frame = 3
Query:  315 DNKTGYKCFVLYPRSLFVTWGNR-DHWTWNCFKET-SDENIEVVKLSHVCWMDVRGKFKISELSPGVMYEIVYVVKLTNAAFGWEAPVSLKLS-LPADG--KVQNRQVTLLEKPRGE-WFELCVGNFLTETNN 695
            + +   KCF++  R L ++   +  +WTW+   ET +D  IEV  L+ V W+ + G F    L+PG  YE+V++V L + + GWE PV+L L  +  DG   +Q R+ T LE   GE W ++  G  +    N
Sbjct:  169 EKEANSKCFMVPARKLQMSHSEKLINWTWSSIYETPNDAAIEVAMLNEVHWLHMSGNFHTRNLTPGTKYEVVFLVSLDDTSSGWEQPVNLNLKVINPDGTESLQERE-TSLECHIGENWVDIQAGVLVAPPRN 300          
BLAST of DY271325 vs. ExPASy Swiss-Prot
Match: PP2B2_ARATH (Putative F-box protein PP2-B2 OS=Arabidopsis thaliana GN=PP2B2 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.747e-11
Identity = 47/149 (31.54%), Postives = 67/149 (44.97%), Query Frame = 3
Query:  309 WIDNKTGYKCFVLYPR-SLFVTW-GNRDHWTWNCFKETSDENIEVVKLSHVCWMDVRGKFKISELSPGVMYEIVYVVKLTNAAFG-WEAPVSLKLSL--------------PADGK--VQNRQVTLLEKPRGEWFELCVGNFLTETNND 698
            W++ + G KCF+L P+ S+++TW     +W W    E   E  EV +L +VCW +VRG     ELSPG  Y    V K  N      + PV   + L              P+D +   + R VT   K +  W E  +G F  E+  D
Sbjct:  125 WLEKENGKKCFMLSPKKSMWITWVSTPQYWRWISIPEARFE--EVPELLNVCWFEVRGGMNTKELSPGTRYSAYIVFKTKNGCPNLGDVPVEATVGLVGQESSQRHIYFVGPSDQRRDRETRDVTRPTKRKDGWMEAELGQFFNESGCD 271          
BLAST of DY271325 vs. ExPASy Swiss-Prot
Match: P2A03_ARATH (Putative protein PHLOEM PROTEIN 2-LIKE A3 OS=Arabidopsis thaliana GN=PP2A3 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 7.993e-11
Identity = 39/123 (31.71%), Postives = 57/123 (46.34%), Query Frame = 3
Query:  354 RSLFVTWGN-RDHWTWNCFKETSDEN--IEVVKLSHVCWMDVRGKFKISELSPGVMYEIVYVVKLTNAAFGWEAPVSLKL----SLPADGKVQNRQVTLLEKPRGEWFELCVGNFLTETNNDG 701
            R L + W +  +HW W         N  +EV +L  V W DV G    +E++P   YE+++VV L ++AF W A V + L    S P     Q R V + +     W  +  G F+T   N G
Sbjct:  312 RDLNIEWSHSEEHWKWVNLDHNISSNTFVEVAELLGVYWFDVSGSLDTTEMAPWTHYEVLFVVNLKDSAFKWNAAVKMNLFYINSRPGGPGTQERAVDMRQHIGKGWVTIHAGEFITTPENVG 434          
The following BLAST results are available for this feature:
BLAST of DY271325 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
P2A01_ARATH1.450e-2840.00Protein PHLOEM PROTEIN 2-LIKE A1 OS=Arabidopsis th... [more]
P2A04_ARATH4.675e-1940.00Uncharacterized protein PHLOEM PROTEIN 2-LIKE A4 O... [more]
P2A05_ARATH5.349e-1534.39Protein PHLOEM PROTEIN 2-LIKE A5 OS=Arabidopsis th... [more]
P2A02_ARATH8.540e-1342.70Protein PHLOEM PROTEIN 2-LIKE A2 OS=Arabidopsis th... [more]
P2A07_ARATH4.238e-1234.59Uncharacterized protein PHLOEM PROTEIN 2-LIKE A7 O... [more]
PP2B2_ARATH2.747e-1131.54Putative F-box protein PP2-B2 OS=Arabidopsis thali... [more]
P2A03_ARATH7.993e-1131.71Putative protein PHLOEM PROTEIN 2-LIKE A3 OS=Arabi... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAP9YJ19FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY271325 ID=DY271325; Name=DY271325; organism=Citrus clementina; type=EST; length=945bp
AGAGCAATATATATATATAAAACAGCTTCACCGACGGTTCACTTCAGATT
AAATCAATGAATTTCAAGAAGAAGGCTGCAACAGAAACGAACAAGACTCA
TGAAGAATTCCTCGAATACAAGAGGAAGGTCCAATCTTGTCTCCCTCATC
TCTTTCTTTATTTCTCTTAATTTGCAAATTAAATGGTTGGATTGTTTATG
TTGTGCTGATAATTGTTTTATTAAACAATTAATTATTACTTAAGCTTATA
AACTAATGATTTATGCAATCCTATATATATATATATATATATATATATAC
AGAAAACATGGATCGATAACAAGACGGGGTATAAGTGCTTCGTGCTGTAT
CCCAGGTCACTTTTTGTTACTTGGGGCAACCGCGATCACTGGACTTGGAA
TTGCTTCAAAGAAACGAGTGATGAAAACATAGAAGTGGTGAAACTAAGCC
ACGTATGCTGGATGGATGTAAGAGGCAAGTTCAAGATATCGGAACTGTCC
CCGGGGGTTATGTATGAGATCGTGTACGTGGTGAAGTTGACAAATGCAGC
ATTTGGATGGGAAGCACCGGTCAGCCTCAAGCTCTCACTGCCTGCCGATG
GGAAAGTGCAGAATCGCCAAGTGACCCTCTTGGAGAAGCCCAGAGGAGAA
TGGTTTGAGCTCTGCGTCGGCAACTTCCTAACGGAGACTAATAATGATGG
ATCCCAAAAGTACGGCTGGAGGTTTTCTTTGAATTTTTTTGAGCATGGGA
GGCAACTGGAAATCTGGACTCATTAATTAAAGCTGCCGTTTCTAGGCCAA
AAATTAACGGAAAACTTTCATCCCCGCTTCTTTCTACTTGTGGACTTGGT
TTGGGGGCGGGCCCCTGCCCAGGTTAAATTTTTCCTTTTTTTTTTTTCCC
CCCCCCGCCAACCCAATTCTCAAAAAAACCCTTAAAAATAATTCT
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