DY271327

Overview
NameDY271327
Unique NameDY271327
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length930
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig2930 contig Ccv1_Contig2930:103..1032. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY271327 vs. ExPASy Swiss-Prot
Match: 21KD_DAUCA (21 kDa protein OS=Daucus carota PE=2 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 3.985e-39
Identity = 89/197 (45.18%), Postives = 124/197 (62.94%), Query Frame = 1
Query:   16 KLSLVSLALFFHLYLAGMANSAIPGHSTPAN-FIRNSCRASRYPALCVQCLSGYGHAIRNEHQ-LAVTXXXXXXXXXXXXXXFVGKLTKVRGIKKREFLAVKDCIENMGDGVDRLSQSVRELGHVGRAVGQDFTWHMSSVQTWVSAALTDENTCLDDFDGRFMDGNVKAAIRRRVTNVAQVTSNALALVNRFAARHQ 600
            KLS  +L     L +   A++A      PAN FI+ SC  + YPA+C Q LS Y   I+N  Q LA T              F+ +L K +G+K R++ A+ DC+E + D +DR+S+S  E+ ++  A G DFT+ MS+V+TWVSAALTDE TC+D F G+ MDG +K ++R +V  VA+VTSNALALVN FAA+H+
Sbjct:    2 KLSKSTLVFSALLVILAAASAA------PANQFIKTSCTLTTYPAVCEQSLSAYAKTIQNNPQELASTALQVSLTRTQQAQTFMKRLNKFKGLKARQYAAIHDCLEEVEDSLDRVSRSCDEMKNLSHAKGNDFTFRMSNVETWVSAALTDETTCMDGFAGKGMDGKIKESVRAQVVAVARVTSNALALVNNFAAKHK 192          
BLAST of DY271327 vs. ExPASy Swiss-Prot
Match: PME3_ARATH (Pectinesterase/pectinesterase inhibitor 3 OS=Arabidopsis thaliana GN=PME3 PE=2 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 5.423e-12
Identity = 56/197 (28.43%), Postives = 101/197 (51.27%), Query Frame = 1
Query:   16 KLSLVS--LALFFHLYLAGMANSAIPGHS----TPANF--IRNSCRASRYPALCVQCL-SGYGHAIRNEHQLAVTXXXXXXXXXXXXXXFVGKLTKVR-GIKKREFLAVKDCIENMGDGVDRLSQSVRELGHVGRAVGQDFTWHMSSVQTWVSAALTDENTCLDDFDGRFMDGNVKAAIRRRVTNVAQVTSNALALV 576
            KL L+S  +AL F   +AG++  A   +     +P++   +R+SC ++RYP LC+  + +  G  + ++  +                  V KL K R G+  RE  A+ DC+E + + +D L ++V +L H+     +    H   ++T +S+A+T++ TCLD F     D  V+ A+ +   +V  + SNALA++
Sbjct:   19 KLVLLSAAVALLFVAAVAGISAGASKANEKRTLSPSSHAVLRSSCSSTRYPELCISAVVTAGGVELTSQKDVIEASVNLTITAVEHNYFTVKKLIKKRKGLTPREKTALHDCLETIDETLDELHETVEDL-HL-YPTKKTLREHAGDLKTLISSAITNQETCLDGFSHDDADKQVRKALLKGQIHVEHMCSNALAMI 213          
BLAST of DY271327 vs. ExPASy Swiss-Prot
Match: PME3_CITSI (Pectinesterase 3 OS=Citrus sinensis PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.578e-11
Identity = 47/171 (27.49%), Postives = 84/171 (49.12%), Query Frame = 1
Query:   73 NSAIPGHSTPANFIRNSCRASRYPALCVQCLSGYGHAIRN-EHQLAVTXXXXXXXXXXXXXXFVG--KLTKVRGIKKREFLAVKDCIENMGDGVDRLSQSVRELGHVGRAVGQDFTWHMSSVQTWVSAALTDENTCLDDFDGRFMDGNVKAAIRRRVTNVAQVTSNALALV 576
            NS   G+      +++SC ++RYP LC   ++    A +    Q  V               + G  KL K   + KRE +A+ DC+E + + +D L ++V +L        +  + H   ++T +SAA+T++ TCLD F     + +V+ A+     +V ++ SNALA++
Sbjct:   56 NSGDNGNEPHHAILKSSCSSTRYPDLCFSAIAAVPEASKKVTSQKDVIEMSLNITTTAVEHNYFGIQKLLKRTNLTKREKVALHDCLETIDETLDELHKAVEDLEEYPNK--KSLSQHADDLKTLMSAAMTNQGTCLDGFSHDDANKHVRDALSDGQVHVEKMCSNALAMI 224          
BLAST of DY271327 vs. ExPASy Swiss-Prot
Match: PME1_CITSI (Pectinesterase 1 OS=Citrus sinensis GN=PECS-1.1 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.578e-11
Identity = 47/171 (27.49%), Postives = 84/171 (49.12%), Query Frame = 1
Query:   73 NSAIPGHSTPANFIRNSCRASRYPALCVQCLSGYGHAIRN-EHQLAVTXXXXXXXXXXXXXXFVG--KLTKVRGIKKREFLAVKDCIENMGDGVDRLSQSVRELGHVGRAVGQDFTWHMSSVQTWVSAALTDENTCLDDFDGRFMDGNVKAAIRRRVTNVAQVTSNALALV 576
            NS   G+      +++SC ++RYP LC   ++    A +    Q  V               + G  KL K   + KRE +A+ DC+E + + +D L ++V +L        +  + H   ++T +SAA+T++ TCLD F     + +V+ A+     +V ++ SNALA++
Sbjct:   56 NSGDNGNEPHHAILKSSCSSTRYPDLCFSAIAAVPEASKKVTSQKDVIEMSLNITTTAVEHNYFGIQKLLKRTNLTKREKVALHDCLETIDETLDELHKAVEDLEEYPNK--KSLSQHADDLKTLMSAAMTNQGTCLDGFSHDDANKHVRDALSDGQVHVEKMCSNALAMI 224          
The following BLAST results are available for this feature:
BLAST of DY271327 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
21KD_DAUCA3.985e-3945.1821 kDa protein OS=Daucus carota PE=2 SV=1[more]
PME3_ARATH5.423e-1228.43Pectinesterase/pectinesterase inhibitor 3 OS=Arabi... [more]
PME3_CITSI1.578e-1127.49Pectinesterase 3 OS=Citrus sinensis PE=1 SV=1[more]
PME1_CITSI1.578e-1127.49Pectinesterase 1 OS=Citrus sinensis GN=PECS-1.1 PE... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAP9YJ21FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY271327 ID=DY271327; Name=DY271327; organism=Citrus clementina; type=EST; length=930bp
CCAAGATATATGGCTAAGCTTTCCCTCGTCTCACTAGCTCTCTTCTTCCA
CCTTTACTTGGCTGGAATGGCAAATTCTGCCATTCCCGGGCATTCCACTC
CCGCAAACTTTATCAGAAATTCGTGTAGAGCCTCTCGATATCCAGCGTTA
TGCGTTCAGTGCCTCTCAGGTTATGGTCATGCCATCCGAAATGAGCATCA
GCTTGCTGTAACTGCCTTGTCAGTGAGCTTAAGCAGGGCACGGTCAGCTG
CTGCTTTTGTGGGCAAGCTGACTAAAGTTAGGGGAATCAAGAAGAGAGAG
TTCCTAGCTGTGAAAGACTGCATAGAGAACATGGGTGACGGCGTAGACCG
ACTTAGTCAATCCGTCAGGGAGCTTGGCCATGTGGGACGAGCTGTCGGCC
AGGACTTTACGTGGCACATGAGTAGTGTGCAGACTTGGGTTAGTGCCGCA
CTAACTGATGAGAACACTTGCTTAGATGATTTTGATGGTCGTTTCATGGA
TGGAAATGTAAAGGCTGCGATCAGGAGAAGGGTCACAAATGTTGCCCAAG
TCACTAGTAACGCTCTTGCTTTGGTTAATCGATTCGCCGCTAGGCACCAA
GCTGCAGCAGTCACCCAGAAGCCTTAGATTTCGTCTAAAGTGACCTCTGC
TGTCTTCTGTATAATATGGTATCTCAATATGATATCCCTTAGGTTCGTGC
TTAGTCTAGTTTCCGTCTTATATAAAAAAGTTTGGTTTTCTGGGCAACCA
ACAAAAAGTAAAGTCAGTATCCAAACATAAGAATTTGTGTTCGGCTGTTG
CCGCTGCCGCTGCTGGTGTTCTTTTTTTTTTCCCCTCTTTAAAAAAATTG
AATTTTGTTTAAAAACCTTTTTGGAAACAATTAAATGTAAGAAAAATGAA
CCCAAAAATGGGGCCACCATTGGTTTGAAA
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