DY271328

Overview
NameDY271328
Unique NameDY271328
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length844
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig3891 contig Ccv1_Contig3891:1..844. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY271328 vs. ExPASy Swiss-Prot
Match: LEA14_GOSHI (Late embryogenesis abundant protein Lea14-A OS=Gossypium hirsutum GN=LEA14-A PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 6.081e-12
Identity = 42/152 (27.63%), Postives = 71/152 (46.71%), Query Frame = 2
Query:   26 IEKVKDFIHDIGEKIEETIGFGKPTADVTAVHIPKINLERADIVIDVXXXXXXXXXXXXXXXXXXVESDGRKLVSGLIPDSGTIHAHGEETVKIPVTLIYDDIKNAYDDIKPGMIIPYKIKVDLIVDVPVFGRLTLPLEKNGEIPIPYKPDI 481
            +EK KDF+      +++     KP A V+ V +  ++ E  +    V                    S GR + SG IPD G++ A     + +PV + Y+ + +   DI     I Y++++ L +D+P+ G  T+PL + GEI +P   DI
Sbjct:    5 LEKAKDFV------VDKVANIKKPEASVSDVDLKHVSRECVEYGAKVSVSNPYSHSIPICEISYNFRSAGRGIASGTIPDPGSLKASDTTMLDVPVKVPYNILVSLVKDIGADWDIDYELELGLTIDLPIVGNFTIPLSQKGEIKLPTLSDI 150          
BLAST of DY271328 vs. ExPASy Swiss-Prot
Match: LEA14_ARATH (Probable desiccation-related protein LEA14 OS=Arabidopsis thaliana GN=LEA14 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.018e-11
Identity = 40/147 (27.21%), Postives = 66/147 (44.90%), Query Frame = 2
Query:   26 IEKVKDFIHDIGEKIEETIGFGKPTADVTAVHIPKINLERADIVIDVXXXXXXXXXXXXXXXXXXVESDGRKLVSGLIPDSGTIHAHGEETVKIPVTLIYDDIKNAYDDIKPGMIIPYKIKVDLIVDVPVFGRLTLPLEKNGEIPIP 466
            ++K KDF+ D      +     KP   VT V +  +N +  + +  V                    S GR++  G IPD G++ A     + IPV + Y  + N   D+     I Y++++ L +D+PV G  T+P+   GEI +P
Sbjct:    5 LDKAKDFVAD------KLTAIPKPEGSVTDVDLKDVNRDSVEYLAKVSVTNPYSHSIPICEISFTFHSAGREIGKGKIPDPGSLKAKDMTALDIPVVVPYSILFNLARDVGVDWDIDYELQIGLTIDLPVVGEFTIPISSKGEIKLP 145          
BLAST of DY271328 vs. ExPASy Swiss-Prot
Match: LEA14_SOYBN (Desiccation protectant protein Lea14 homolog OS=Glycine max PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.941e-11
Identity = 38/152 (25.00%), Postives = 73/152 (48.03%), Query Frame = 2
Query:   26 IEKVKDFIHDIGEKIEETIGFGKPTADVTAVHIPKINLERADIVIDVXXXXXXXXXXXXXXXXXXVESDGRKLVSGLIPDSGTIHAHGEETVKIPVTLIYDDIKNAYDDIKPGMIIPYKIKVDLIVDVPVFGRLTLPLEKNGEIPIPYKPDI 481
            ++K K+++       E+     KP A VT V   +++ +  + +  V                  ++S G+++ SG IPD G++ A     + +PV + +  + +   DI     I Y++ + L++D+PV G  T+PL + GEI +P   D+
Sbjct:    5 LDKAKNYV------AEKVTNMPKPEASVTDVDFKRVSRDSVEYLAKVSVSNPYSTPIPICEIKYSLKSAGKEIASGTIPDPGSLKASDTTMLDVPVKVPHSILLSLAKDIGADWDIDYQLDLGLVIDLPVIGNFTIPLSQKGEIKLPTLSDM 150          
The following BLAST results are available for this feature:
BLAST of DY271328 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
LEA14_GOSHI6.081e-1227.63Late embryogenesis abundant protein Lea14-A OS=Gos... [more]
LEA14_ARATH3.018e-1127.21Probable desiccation-related protein LEA14 OS=Arab... [more]
LEA14_SOYBN3.941e-1125.00Desiccation protectant protein Lea14 homolog OS=Gl... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAP9YJ22FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY271328 ID=DY271328; Name=DY271328; organism=Citrus clementina; type=EST; length=844bp
CAAAGAAGAGGGTAAAGGTGGATTTATCGAAAAAGTCAAGGATTTTATCC
ATGATATTGGTGAAAAGATTGAGGAAACAATTGGATTTGGGAAGCCAACT
GCTGATGTTACTGCAGTTCACATTCCTAAAATTAATCTTGAAAGGGCAGA
TATTGTTATTGACGTGCTCATTAAAAACCCGAATCCTATACCGATCCCTC
TAATTGACATAAACTACTTGGTTGAGAGTGATGGAAGGAAATTGGTTTCT
GGATTGATCCCAGATTCTGGAACTATTCATGCACATGGCGAGGAGACTGT
CAAAATCCCTGTTACTCTGATTTATGATGACATTAAAAATGCATATGATG
ATATCAAGCCTGGGATGATTATTCCATATAAGATCAAGGTTGACCTGATT
GTAGATGTGCCGGTTTTTGGAAGGTTGACTCTTCCACTTGAGAAAAATGG
AGAGATCCCCATTCCTTACAAGCCCGATATTGATCTCGAGAAGATTAAGT
TTGAGAGATTCTCATTTGAAGAAACTGTTGCAATTCTTCATTTGAAGTTG
GAAAATAAGAACGACTTTGACATGGCCCTGAATTCACTTGATTATGAAGT
TTGGCTATCAGATGCGAGCATTGGAGCTGCTGAACTCACAAAATCTGCCA
AAATTGACAAGAATGGGAATAGCCTATATTGATATTCCTATCACCTTTTA
GGCCCAAGGACTTTGGCTCCGCACTTTGGGACATGATCAGAGGAAAAGGT
ACGGGTTACACCATGAAAAGGACAAATTGAGGTGGACCCACCTTTTGGAG
CTATGAAGTTACCAATCCCCAAGGAGGGTGGTTACTACCCGCCC
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