DY271332

Overview
NameDY271332
Unique NameDY271332
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length943
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig3893 contig Ccv1_Contig3893:1..943. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of DY271332 vs. ExPASy Swiss-Prot
Match: WDR82_CHICK (WD repeat-containing protein 82 OS=Gallus gallus GN=WDR82 PE=2 SV=1)

HSP 1 Score: 45.8246 bits (107), Expect = 3.005e-11
Identity = 26/85 (30.59%), Postives = 48/85 (56.47%), Query Frame = 2 
Query:  350 MPGRPATAYNDQGRAFAVAFGG-YIRLFDARKYE-GPFDIFSDGGD-VSDANEVKLSNDGRLMLLTTLEGHIHVLYSFQGTLFLT 595
            + G+P  +++ +G  FA       ++L+D R ++ GPF  F    D   +   +K SNDG+L+L++T  G I ++ +F+G +  T
Sbjct:  147 LQGKPVCSFDPEGLIFAAGVNSEMVKLYDLRSFDKGPFATFKMQYDRTCEWTGLKFSNDGKLILISTNGGFIRLIDAFKGAVLHT 231

HSP 2 Score: 39.2762 bits (90), Expect = 3.005e-11
Identity = 15/32 (46.88%), Postives = 23/32 (71.88%), Query Frame = 1 
Query:  250 IFLKNGWDESLRLLSLHDNKFMHYFKGHHDRL 345
            ++  N  D+++R LSLHDNK++ YF GH  R+
Sbjct:   79 VYSSNKIDDTIRYLSLHDNKYIRYFPGHTKRV 110

HSP 3 Score: 23.8682 bits (50), Expect = 3.005e-11
Identity = 9/22 (40.91%), Postives = 13/22 (59.09%), Query Frame = 3 
Query:  624 GSGDGSVYAWSGRSRKEGCKLD 689
            GS DG ++ W+G S  +   LD
Sbjct:  257 GSEDGKIHVWNGESGMKVAVLD 278
The following BLAST results are available for this feature:
BLAST of DY271332 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
WDR82_CHICK3.005e-1130.59WD repeat-containing protein 82 OS=Gallus gallus G... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAP9YK02FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY271332 ID=DY271332; Name=DY271332; organism=Citrus clementina; type=EST; length=943bp
TGTGTTTGTACTCATTAGCCATGTAGCATCAACTGCTGCTGGAAACGCTG
GTGTTCCGGTGGTCGTCGATGGCTTCTTTTATGGGTTAGCCAGTGGGATG
GCGCCATGTGCCTGAATTGCTGTTTATAAGGCAGTGTATCCAACAGTGGG
AACTATTGCAGATGTGATTGCGGCAAGAGTTGGCATAAATATTCTCAGCT
GGAAATTGATCAAAGTTTTTTTCTTGGCAATCCCTAGCTTACATTTCATA
TATTCCTCAAGAATGGTTGGGATGAATCTCTACGGCTTCTTTCTTTGCAC
GATAACAAGTTCATGCATTACTTCAAAGGTCATCATGACAGGCTGAGAAA
TGCCAGGAAGGCCTGCTACAGCATACAATGATCAAGGGCGTGCCTTTGCA
GTTGCCTTTGGAGGATACATAAGATTGTTTGATGCTCGCAAGTATGAGGG
TCCTTTCGACATCTTCTCTGATGGTGGAGATGTATCAGATGCTAATGAGG
TAAAGCTCAGCAATGATGGGAGACTTATGCTTCTGACCACTCTGGAAGGA
CATATTCATGTGCTCTACTCATTCCAAGGCACACTTTTTCTCACAATTCC
ACATTGGAGGCATCTTTCACCCAGGTTCTGGTGATGGTAGTGTATATGCT
TGGAGTGGAAGGAGCAGGAAAGAGGGTTGCAAGTTGGATGATTTTTCTAA
CAAACCTCCTGTCATAAACATGGGCCCCTGGAAGTCCCATGTTTTGTATC
CAATCATCTGAACCTATATTTTGGAAATCCGGATCTGGCTAAACTGGGAA
CTTACGTTGGAAGGAAATGAAATTTCTGAATTTTTATAAAAAAACAGGAA
ATTCCTTGGGTGCCACCTTTTTTCCTTGACTTGGGACCCCAGCCAATTAT
TAGGGCCCAAAAAACACCAATTCCACCCCCCTTAAAATTTCTT
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