DY271334

Overview
NameDY271334
Unique NameDY271334
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length951
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY271334 vs. ExPASy Swiss-Prot
Match: AFC1_ARATH (Serine/threonine-protein kinase AFC1 OS=Arabidopsis thaliana GN=AFC1 PE=2 SV=2)

HSP 1 Score: 314.694 bits (805), Expect = 4.953e-85
Identity = 159/253 (62.85%), Postives = 186/253 (73.52%), Query Frame = 3
Query:  159 METQRIIEFPHKNMDKRPRKRPRLTWDXXXXXXXXXXXXA-----LYCVQEFGNGGMPNYACSSMFYGAIPRTGSPPWRPDDKDGHYVFAIGENLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHICIVFEKTWTKLIPISPAKTAYRSFPNDLVRELGKTLLESVTFMPDLPLKTHLP*TQKKFLLVSPE*VKVPRIK-ISHPNR 899
            +ETQR +EFPH+ +DKRPRKRPRLTWD                  LY   EF +G +PN+   +MFY  +PR GSPPWRPDDKDGHYVF +G+ LTPRY+ILSKMGEGTFGQV+ECFDN+ KE+VAIK++RSINKYREAAMIEIDVLQRL RHD+GG+RCVQIRNWFDYRNHICIVFEK    L      K +YRSFP DLVRELG+ LLESV +M DL L  H     +  LLVS E +K+P  K +S P +
Sbjct:   17 LETQRNVEFPHRIVDKRPRKRPRLTWDAAPPLLPPPPPPTVFQPPLYYGPEFASGLVPNFVYPNMFYNGLPRQGSPPWRPDDKDGHYVFVVGDTLTPRYQILSKMGEGTFGQVLECFDNKNKEVVAIKVIRSINKYREAAMIEIDVLQRLTRHDVGGSRCVQIRNWFDYRNHICIVFEKLGPSLYDFL-RKNSYRSFPIDLVRELGRQLLESVAYMHDLRL-IHTDLKPENILLVSSEYIKIPDYKFLSRPTK 267          
BLAST of DY271334 vs. ExPASy Swiss-Prot
Match: AFC2_ARATH (Serine/threonine-protein kinase AFC2 OS=Arabidopsis thaliana GN=AFC2 PE=1 SV=1)

HSP 1 Score: 275.404 bits (703), Expect = 3.330e-73
Identity = 145/261 (55.56%), Postives = 176/261 (67.43%), Query Frame = 3
Query:  159 METQRIIEFPHKNMDKRPRKRPRLTWDXXXXXXXXXXXXALYCVQEFGN------GGMPNYACSSMFYGAIPRTGSPPWRPDDKDGHYVFAIGENLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHICIVFEKTWTKLIPISPAKTAYRSFPNDLVRELGKTLLESVTFMPDLPLKTHLP*TQKKFLLVSPE*VKVPRIKISHPNRQ---RRVP 914
            ME +R+ EFPH +MD+RPRKR RL WD             ++C QE GN       G P+   SS+    + R GSPPWR DDKDGHY+F +G++LTPRY+I SKMGEGTFGQV+EC+D E+KE+VA+KIVR + KYREAAMIEI++LQ+L +HD GG RCVQIRNWFDYRNHICIVFEK  + L      K  YRSFP DLVRE+G  LLE V FM DL +  H     +  LLVS + VK+P  K S   R    +RVP
Sbjct:    1 MEMERVHEFPHTHMDRRPRKRARLGWDVLPQATKAQV--GMFCGQEIGNISSFASSGAPSDNSSSLCVKGVARNGSPPWREDDKDGHYIFELGDDLTPRYKIYSKMGEGTFGQVLECWDRERKEMVAVKIVRGVKKYREAAMIEIEMLQQLGKHDKGGNRCVQIRNWFDYRNHICIVFEKLGSSLYDFL-RKNNYRSFPIDLVREIGWQLLECVAFMHDLRM-IHTDLKPENILLVSSDYVKIPEYKGSRLQRDVCYKRVP 257          
BLAST of DY271334 vs. ExPASy Swiss-Prot
Match: AFC3_ARATH (Serine/threonine-protein kinase AFC3 OS=Arabidopsis thaliana GN=AFC3 PE=2 SV=2)

HSP 1 Score: 212.616 bits (540), Expect = 2.651e-54
Identity = 122/236 (51.69%), Postives = 150/236 (63.56%), Query Frame = 3
Query:  192 KNMDK-RPRKRPRLTWDXXXXXXXXXXXXALYCVQEFGNGGMPNYACSSMFYGAIPRTGSPPWRPDDKDGHYVFAIGENLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHICIVFEKTWTKLIPISPAKTAYRSFPNDLVRELGKTLLESVTFMPDLPLKTHLP*TQKKFLLVSPE*VKVPRIKISHPN 896
            ++MDK R RKRPR+TWD                ++  G+ G               R  SPP R DD+DGHYVF++ +NLTPRY+ILSKMGEGTFG+V+EC+D + KE VAIKI+RSI KYR+AAMIEIDVLQ+L + D G TRCVQ++NWFDYRNHICIVFEK    L      +  Y +FP  LVR+ G  LLESV +M +L L  H     +  LLVS E VK+P  K S  N
Sbjct:    7 ESMDKERVRKRPRMTWDEAPAEPEAKRAV----IKGHGSDG---------------RILSPPLRDDDRDGHYVFSLRDNLTPRYKILSKMGEGTFGRVLECWDRDTKEYVAIKIIRSIKKYRDAAMIEIDVLQKLVKSDKGRTRCVQMKNWFDYRNHICIVFEKLGPSLFDFL-KRNKYSAFPLALVRDFGCQLLESVAYMHELQL-VHTDLKPENILLVSSENVKLPDNKRSAAN 221          
BLAST of DY271334 vs. ExPASy Swiss-Prot
Match: DOA_DROME (Serine/threonine-protein kinase Doa OS=Drosophila melanogaster GN=Doa PE=1 SV=2)

HSP 1 Score: 112.464 bits (280), Expect = 3.733e-24
Identity = 69/180 (38.33%), Postives = 103/180 (57.22%), Query Frame = 3
Query:  384 DDKDGHYVFAIGENLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTR-CVQIRNWFDYRNHICIVFEKTWTKLIPISPAKTAYRSFPNDLVRELGKTLLESVTFMPDLPLKTHLP*TQKKFLLVSPE*VKVPRIKISHPNRQ-RRVPN 917
            DD DGH ++  G+ L  RY+I++ +GEGTFG+VV+  D E+   +A+KI++++ KYREAA +EI+ L+++A+ D      CV++ +WFDY  H+CIVFE     +      +  Y  +P D VR +   L  SV F+ D  L TH     +  L V  +       KI   NR+ RRV N
Sbjct:  461 DDADGHLIYHTGDILHHRYKIMATLGEGTFGRVVKVKDMERDYCMALKIIKNVEKYREAAKLEINALEKIAQKDPHCDHLCVKMIDWFDYHGHMCIVFEMLGLSVFDFL-RENNYEPYPLDQVRHMAYQLCYSVKFLHDNRL-THTDLKPENILFVDSDYTSHYNHKI---NREVRRVKN 635          
BLAST of DY271334 vs. ExPASy Swiss-Prot
Match: LKH1_SCHPO (Dual specificity protein kinase lkh1 OS=Schizosaccharomyces pombe GN=lkh1 PE=1 SV=3)

HSP 1 Score: 107.071 bits (266), Expect = 1.568e-22
Identity = 62/165 (37.58%), Postives = 88/165 (53.33%), Query Frame = 3
Query:  360 TGSPPWRPDDKDGHYVFAIGENLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHD-IGGTRCVQIRNWFDYRNHICIVFEKTWTKLIPISPAKTAYRSFPNDLVRELGKTLLESVTFMPDLPLKTHLP*TQKKFLLVS 851
            T   P   DD DGHY          RY ++  +G GTFG+V++C+D       AIK+ R+I KYREA++IE+ VLQ +A  D     +C+Q+R++FDYR HICIV +     +         Y  FP   ++ L + L +SV F+  L L  H     +  LLVS
Sbjct:  336 TAFDPSTFDDDDGHYKVVPNSKFANRYTVVRLLGHGTFGKVIQCYDQSTGRHCAIKVTRAIPKYREASLIELRVLQTIAHSDPTNENKCIQLRDYFDYRKHICIVTDLFGWSVFDFL-KNNNYIPFPLKHIQMLSQQLFKSVAFLHSLGL-VHTDLKPENVLLVS 498          
BLAST of DY271334 vs. ExPASy Swiss-Prot
Match: CLK2_HUMAN (Dual specificity protein kinase CLK2 OS=Homo sapiens GN=CLK2 PE=1 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 2.048e-22
Identity = 59/160 (36.88%), Postives = 92/160 (57.50%), Query Frame = 3
Query:  384 DDKDGHYVFAIGENLTPRYRILSKMGEGTFGQVVECFDNEK-KELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTR-CVQIRNWFDYRNHICIVFEKTWTKLIPISPAKTAYRSFPNDLVRELGKTLLESVTFMPDLPLKTHLP*TQKKFLLVSPE 857
            DD +GH ++ +G+ L  RY I+S +GEGTFG+VV+C D+ +    VA+KI++++ KY+EAA +EI+VL+++   D      CVQ+ +WFDY  H+CI FE               Y  +P   VR +   L ++V F+ D  L TH     +  L V+ +
Sbjct:  145 DDAEGHLIYHVGDWLQERYEIVSTLGEGTFGRVVQCVDHRRGGARVALKIIKNVEKYKEAARLEINVLEKINEKDPDNKNLCVQMFDWFDYHGHMCISFELLGLSTFDFLKDNN-YLPYPIHQVRHMAFQLCQAVKFLHDNKL-THTDLKPENILFVNSD 302          
BLAST of DY271334 vs. ExPASy Swiss-Prot
Match: CLK3_RAT (Dual specificity protein kinase CLK3 OS=Rattus norvegicus GN=Clk3 PE=2 SV=2)

HSP 1 Score: 105.531 bits (262), Expect = 4.564e-22
Identity = 60/160 (37.50%), Postives = 92/160 (57.50%), Query Frame = 3
Query:  384 DDKDGHYVFAIGENLTPRYRILSKMGEGTFGQVVECFDNEK-KELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGT-RCVQIRNWFDYRNHICIVFEKTWTKLIPISPAKTAYRSFPNDLVRELGKTLLESVTFMPDLPLKTHLP*TQKKFLLVSPE 857
            DDK+GH V  IG+ L  RY I+  +GEGTFG+VVEC D+ + K  VA+KI+R++ KYREAA +EI+VL+++   D      CV + +WF++  H+CI FE            +  ++ +P   VR +   L  ++ F+ +  L TH     +  L V+ E
Sbjct:  138 DDKEGHLVCRIGDWLQERYEIVGNLGEGTFGKVVECLDHARGKSQVALKIIRNVGKYREAARLEINVLKKIKEKDKENKFLCVLMSDWFNFHGHMCIAFELLGKNTFEFL-KENNFQPYPLPHVRHMAYQLCHALRFLHENQL-THTDLKPENILFVNSE 295          
BLAST of DY271334 vs. ExPASy Swiss-Prot
Match: CLK3_MOUSE (Dual specificity protein kinase CLK3 OS=Mus musculus GN=Clk3 PE=1 SV=2)

HSP 1 Score: 105.531 bits (262), Expect = 4.564e-22
Identity = 60/160 (37.50%), Postives = 92/160 (57.50%), Query Frame = 3
Query:  384 DDKDGHYVFAIGENLTPRYRILSKMGEGTFGQVVECFDNEK-KELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGT-RCVQIRNWFDYRNHICIVFEKTWTKLIPISPAKTAYRSFPNDLVRELGKTLLESVTFMPDLPLKTHLP*TQKKFLLVSPE 857
            DDK+GH V  IG+ L  RY I+  +GEGTFG+VVEC D+ + K  VA+KI+R++ KYREAA +EI+VL+++   D      CV + +WF++  H+CI FE            +  ++ +P   VR +   L  ++ F+ +  L TH     +  L V+ E
Sbjct:  286 DDKEGHLVCRIGDWLQERYEIVGNLGEGTFGKVVECLDHARGKSQVALKIIRNVGKYREAARLEINVLKKIKEKDKENKFLCVLMSDWFNFHGHMCIAFELLGKNTFEFL-KENNFQPYPLPHVRHMAYQLCHALRFLHENQL-THTDLKPENILFVNSE 443          
BLAST of DY271334 vs. ExPASy Swiss-Prot
Match: CLK3_HUMAN (Dual specificity protein kinase CLK3 OS=Homo sapiens GN=CLK3 PE=1 SV=3)

HSP 1 Score: 105.531 bits (262), Expect = 4.564e-22
Identity = 60/160 (37.50%), Postives = 92/160 (57.50%), Query Frame = 3
Query:  384 DDKDGHYVFAIGENLTPRYRILSKMGEGTFGQVVECFDNEK-KELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGT-RCVQIRNWFDYRNHICIVFEKTWTKLIPISPAKTAYRSFPNDLVRELGKTLLESVTFMPDLPLKTHLP*TQKKFLLVSPE 857
            DDK+GH V  IG+ L  RY I+  +GEGTFG+VVEC D+ + K  VA+KI+R++ KYREAA +EI+VL+++   D      CV + +WF++  H+CI FE            +  ++ +P   VR +   L  ++ F+ +  L TH     +  L V+ E
Sbjct:  286 DDKEGHLVCRIGDWLQERYEIVGNLGEGTFGKVVECLDHARGKSQVALKIIRNVGKYREAARLEINVLKKIKEKDKENKFLCVLMSDWFNFHGHMCIAFELLGKNTFEFL-KENNFQPYPLPHVRHMAYQLCHALRFLHENQL-THTDLKPENILFVNSE 443          
BLAST of DY271334 vs. ExPASy Swiss-Prot
Match: CLK3_BOVIN (Dual specificity protein kinase CLK3 OS=Bos taurus GN=CLK3 PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 4.564e-22
Identity = 60/160 (37.50%), Postives = 92/160 (57.50%), Query Frame = 3
Query:  384 DDKDGHYVFAIGENLTPRYRILSKMGEGTFGQVVECFDNEK-KELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGT-RCVQIRNWFDYRNHICIVFEKTWTKLIPISPAKTAYRSFPNDLVRELGKTLLESVTFMPDLPLKTHLP*TQKKFLLVSPE 857
            DDK+GH V  IG+ L  RY I+  +GEGTFG+VVEC D+ + K  VA+KI+R++ KYREAA +EI+VL+++   D      CV + +WF++  H+CI FE            +  ++ +P   VR +   L  ++ F+ +  L TH     +  L V+ E
Sbjct:  138 DDKEGHLVCRIGDWLQERYEIVGNLGEGTFGKVVECLDHARGKSQVALKIIRNVGKYREAARLEINVLKKIKEKDKENKFLCVLMSDWFNFHGHMCIAFELLGKNTFEFL-KENNFQPYPLPHVRHMAYQLCHALRFLHENQL-THTDLKPENILFVNSE 295          
The following BLAST results are available for this feature:
BLAST of DY271334 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 54
Match NameE-valueIdentityDescription
AFC1_ARATH4.953e-8562.85Serine/threonine-protein kinase AFC1 OS=Arabidopsi... [more]
AFC2_ARATH3.330e-7355.56Serine/threonine-protein kinase AFC2 OS=Arabidopsi... [more]
AFC3_ARATH2.651e-5451.69Serine/threonine-protein kinase AFC3 OS=Arabidopsi... [more]
DOA_DROME3.733e-2438.33Serine/threonine-protein kinase Doa OS=Drosophila ... [more]
LKH1_SCHPO1.568e-2237.58Dual specificity protein kinase lkh1 OS=Schizosacc... [more]
CLK2_HUMAN2.048e-2236.88Dual specificity protein kinase CLK2 OS=Homo sapie... [more]
CLK3_RAT4.564e-2237.50Dual specificity protein kinase CLK3 OS=Rattus nor... [more]
CLK3_MOUSE4.564e-2237.50Dual specificity protein kinase CLK3 OS=Mus muscul... [more]
CLK3_HUMAN4.564e-2237.50Dual specificity protein kinase CLK3 OS=Homo sapie... [more]
CLK3_BOVIN4.564e-2237.50Dual specificity protein kinase CLK3 OS=Bos taurus... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP9YK05FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY271334 ID=DY271334; Name=DY271334; organism=Citrus clementina; type=EST; length=951bp
GATCAATCCCCTTTTAGGGTTTCCAACACTGAAAATCATTTCTTCAAAAT
TTCCTTAATTTTTTGCTCTCAATTTTTTTTAAAGCATTATGATTCAAATT
GAGCTTAATCCATGGCTCTGCTAGATTTTTTGAATTGAAAATTTAAACAA
TAAAAGAAATGGAAACGCAGAGAATTATAGAATTTCCGCATAAAAACATG
GACAAGCGTCCCAGAAAACGACCCCGTTTAACGTGGGACGTGCCGCCTCC
TCTTCCTCCTCCCAAGGTTCTTCCGGCTCTGTATTGTGTTCAGGAGTTTG
GGAATGGAGGAATGCCCAATTATGCCTGTTCATCCATGTTTTATGGTGCG
ATTCCTCGCACTGGATCACCTCCTTGGAGACCTGATGATAAAGACGGACA
TTATGTTTTTGCCATCGGAGAAAATTTAACTCCTCGCTACAGGATTCTCA
GCAAAATGGGTGAAGGGACATTTGGGCAAGTCGTGGAATGTTTTGACAAT
GAGAAGAAGGAACTTGTGGCAATCAAAATTGTTCGCTCTATAAACAAGTA
TCGTGAAGCAGCCATGATCGAAATTGATGTTCTACAGAGGCTTGCCAGGC
ATGACATTGGTGGCACCCGTTGTGTGCAAATACGGAATTGGTTTGACTAT
CGTAATCATATTTGTATTGTATTTGAAAAAACTTGGACCAAGCTTATACC
AATTTCCCCCGCAAAAACAGCTTATCGTTCATTTCCCAATGATCTGGTTC
GGGAGCTTGGCAAAACACTATTGGAGTCTGTAACATTTATGCCTGATTTA
CCTCTTAAAACACACCTGCCTTGAACCCAAAAAAAATTTCTTCTTGTTTC
CCCCGAATAGGTTAAAGTTCCCCGAATAAAAATTTCTCATCCCAACCGCC
AAAGGAGGGTTCCCAATTTCAAAGAATCCTTCCAAAGTCAATTGCAATTA
A
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