DY271340

Overview
NameDY271340
Unique NameDY271340
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length983
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY271340_ssr267 microsatellite DY271340_ssr267:267..281. BLAST: Citrus ESTs to Prunus persica proteins V1
DY271340_ssr249 microsatellite DY271340_ssr249:249..264. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig3895 contig Ccv1_Contig3895:1..983. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY271340 vs. ExPASy Swiss-Prot
Match: GPX8_ARATH (Probable glutathione peroxidase 8 OS=Arabidopsis thaliana GN=GPX8 PE=2 SV=1)

HSP 1 Score: 239.195 bits (609), Expect = 2.791e-62
Identity = 111/142 (78.17%), Postives = 126/142 (88.73%), Query Frame = 2
Query:  293 QDARGHEVDLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNGEHASPLYKLLKLGKWGIFGDDIQWNFAKFLVDKNGEVVDRYHPQLLRLAL 718
            +DA+G+ + LS YK KVLLIVNVASKCGMTNSNY EL++LY++YKD+GLEILAFPCNQFG+EEPG+NDQI DFVCTRFKSEFPIF KI+VNGE+ASPLYK LK GKWGIFGDDIQWNFAKFLVDKNG+ V RY+P    L L
Sbjct:   15 EDAKGNNLALSQYKDKVLLIVNVASKCGMTNSNYTELNELYNRYKDKGLEILAFPCNQFGDEEPGTNDQITDFVCTRFKSEFPIFNKIEVNGENASPLYKFLKKGKWGIFGDDIQWNFAKFLVDKNGQAVQRYYPTTSPLTL 156          
BLAST of DY271340 vs. ExPASy Swiss-Prot
Match: GPX4_CITSI (Probable phospholipid hydroperoxide glutathione peroxidase OS=Citrus sinensis GN=CSA PE=1 SV=1)

HSP 1 Score: 221.09 bits (562), Expect = 7.865e-57
Identity = 101/142 (71.13%), Postives = 123/142 (86.62%), Query Frame = 2
Query:  293 QDARGHEVDLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNGEHASPLYKLLKLGKWGIFGDDIQWNFAKFLVDKNGEVVDRYHPQLLRLAL 718
            +DA+G +VDLS YKGK+LLIVNVAS+CG+TNSNY ELSQLYDKYK+QGLEILAFPCNQFG +EPG N+QI +F CTRFK+EFPIF+K+DVNG++A+PLYK LK  K G+FGD I+WNF+KFLVDK G VV+RY P    L++
Sbjct:   15 KDAKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSI 156          
BLAST of DY271340 vs. ExPASy Swiss-Prot
Match: GPX4_MESCR (Probable phospholipid hydroperoxide glutathione peroxidase OS=Mesembryanthemum crystallinum GN=GPXMC1 PE=2 SV=1)

HSP 1 Score: 216.853 bits (551), Expect = 1.483e-55
Identity = 97/135 (71.85%), Postives = 121/135 (89.63%), Query Frame = 2
Query:  293 QDARGHEVDLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNGEHASPLYKLLKLGKWGIFGDDIQWNFAKFLVDKNGEVVDRYHP 697
            +DARG++VDLS YKGKVLLIVNVAS+CG+TNSNY EL++LY++YKD+GLEILAFPCNQFG +EPG N+QI +F CTRFK+EFPIF+K+DVNG +A+P+YK LK  K G+FGD I+WNF KFLVD++G+VVDRY P
Sbjct:   18 KDARGNDVDLSIYKGKVLLIVNVASQCGLTNSNYPELTKLYEQYKDKGLEILAFPCNQFGNQEPGDNEQIMEFACTRFKAEFPIFDKVDVNGSNAAPVYKYLKSSKGGLFGDGIKWNFTKFLVDRDGKVVDRYAP 152          
BLAST of DY271340 vs. ExPASy Swiss-Prot
Match: GPX1_HELAN (Glutathione peroxidase 1 OS=Helianthus annuus GN=GPXHA-1 PE=2 SV=1)

HSP 1 Score: 216.083 bits (549), Expect = 2.530e-55
Identity = 96/135 (71.11%), Postives = 123/135 (91.11%), Query Frame = 2
Query:  293 QDARGHEVDLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNGEHASPLYKLLKLGKWGIFGDDIQWNFAKFLVDKNGEVVDRYHP 697
            +DA+G++VDLS YKGKV+LIVNVASKCG+TN++Y EL+Q+Y KYK++G EILAFPCNQFG++EPG+N++I DFVCT+FKSEFPIF+KIDVNGE+A+P+Y+ LK G +GI G DIQWNF+KFLVDKNG+ VD Y+P
Sbjct:   15 KDAKGNDVDLSVYKGKVVLIVNVASKCGLTNNSYDELNQIYLKYKEKGFEILAFPCNQFGQQEPGTNEEIVDFVCTKFKSEFPIFDKIDVNGENAAPVYEFLKTGFYGILGGDIQWNFSKFLVDKNGQPVDCYYP 149          
BLAST of DY271340 vs. ExPASy Swiss-Prot
Match: GPX4_SPIOL (Probable phospholipid hydroperoxide glutathione peroxidase OS=Spinacia oleracea PE=2 SV=1)

HSP 1 Score: 214.542 bits (545), Expect = 7.361e-55
Identity = 93/135 (68.89%), Postives = 120/135 (88.89%), Query Frame = 2
Query:  293 QDARGHEVDLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNGEHASPLYKLLKLGKWGIFGDDIQWNFAKFLVDKNGEVVDRYHP 697
            +DARG++VDLS YKGKVLLIVNVAS+CG+TNSNY E+++LY+KY++ GLEILAFPCNQFG +EPGSN+++ +F CTRFK+E+PIF+K+DVNG +A+P+YK LK  K G+FGD ++WNF KFLVDK+G VVDRY P
Sbjct:   18 RDARGNDVDLSIYKGKVLLIVNVASQCGLTNSNYTEMTELYEKYRELGLEILAFPCNQFGNQEPGSNEEVLEFACTRFKAEYPIFDKVDVNGSNAAPIYKFLKSSKGGLFGDGLKWNFTKFLVDKDGNVVDRYAP 152          
BLAST of DY271340 vs. ExPASy Swiss-Prot
Match: GPX6_ARATH (Probable phospholipid hydroperoxide glutathione peroxidase 6, mitochondrial OS=Arabidopsis thaliana GN=GPX6 PE=2 SV=2)

HSP 1 Score: 214.157 bits (544), Expect = 9.614e-55
Identity = 96/142 (67.61%), Postives = 121/142 (85.21%), Query Frame = 2
Query:  293 QDARGHEVDLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNGEHASPLYKLLKLGKWGIFGDDIQWNFAKFLVDKNGEVVDRYHPQLLRLAL 718
            +DA+G++VDLS YKGKVLLIVNVAS+CG+TNSNY EL+QLY+KYK  G EILAFPCNQFG +EPG+N++I  F CTRFK+E+PIF+K+DVNG+ A+P+YK LK  K G+FGD I+WNFAKFLVDK+G VVDR+ P    L++
Sbjct:   79 KDAKGNDVDLSIYKGKVLLIVNVASQCGLTNSNYTELAQLYEKYKGHGFEILAFPCNQFGNQEPGTNEEIVQFACTRFKAEYPIFDKVDVNGDKAAPVYKFLKSSKGGLFGDGIKWNFAKFLVDKDGNVVDRFAPTTSPLSI 220          
BLAST of DY271340 vs. ExPASy Swiss-Prot
Match: GPX4_NICSY (Probable phospholipid hydroperoxide glutathione peroxidase OS=Nicotiana sylvestris PE=2 SV=1)

HSP 1 Score: 213.001 bits (541), Expect = 2.142e-54
Identity = 95/135 (70.37%), Postives = 119/135 (88.15%), Query Frame = 2
Query:  293 QDARGHEVDLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNGEHASPLYKLLKLGKWGIFGDDIQWNFAKFLVDKNGEVVDRYHP 697
            +DA+G++VDLS YKGKVL+IVNVAS+CG+TNSNY +L+++Y KYKDQGLEILAFPCNQFG +EPGS ++I + VCTRFK+E+PIF+K+DVNG++A+PLYK LK  K G FGD I+WNF+KFLVDK G VVDRY P
Sbjct:   17 KDAKGNDVDLSIYKGKVLIIVNVASQCGLTNSNYTDLTEIYKKYKDQGLEILAFPCNQFGGQEPGSIEEIQNMVCTRFKAEYPIFDKVDVNGDNAAPLYKFLKSSKGGFFGDSIKWNFSKFLVDKEGNVVDRYSP 151          
BLAST of DY271340 vs. ExPASy Swiss-Prot
Match: GPX4_TOBAC (Probable phospholipid hydroperoxide glutathione peroxidase OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 212.231 bits (539), Expect = 3.653e-54
Identity = 94/135 (69.63%), Postives = 119/135 (88.15%), Query Frame = 2
Query:  293 QDARGHEVDLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNGEHASPLYKLLKLGKWGIFGDDIQWNFAKFLVDKNGEVVDRYHP 697
            +DA+G++VDLS YKGKVL+IVNVAS+CG+TNSNY +++++Y KYKDQGLEILAFPCNQFG +EPGS ++I + VCTRFK+E+PIF+K+DVNG++A+PLYK LK  K G FGD I+WNF+KFLVDK G VVDRY P
Sbjct:   17 KDAKGNDVDLSIYKGKVLIIVNVASQCGLTNSNYTDMTEIYKKYKDQGLEILAFPCNQFGGQEPGSIEEIQNMVCTRFKAEYPIFDKVDVNGDNAAPLYKFLKSSKGGFFGDSIKWNFSKFLVDKEGNVVDRYSP 151          
BLAST of DY271340 vs. ExPASy Swiss-Prot
Match: GPX4_GOSHI (Probable phospholipid hydroperoxide glutathione peroxidase OS=Gossypium hirsutum PE=2 SV=1)

HSP 1 Score: 208.764 bits (530), Expect = 4.039e-53
Identity = 95/136 (69.85%), Postives = 118/136 (86.76%), Query Frame = 2
Query:  293 QDARGHEVDLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGS-NDQIADFVCTRFKSEFPIFEKIDVNGEHASPLYKLLKLGKWGIFGDDIQWNFAKFLVDKNGEVVDRYHP 697
            +DA+G++VDLS YKGKVL+IVNVAS+CG+TNSNY +L+++Y KYKDQGLEILAFPCNQFG +EPGS  + I + VCTRFK+E+PIF+K+DVNG++A+PLYK LK  K G FGD I+WNF+KFLVDK G VVDRY P
Sbjct:   17 KDAKGNDVDLSIYKGKVLIIVNVASQCGLTNSNYTDLTEIYKKYKDQGLEILAFPCNQFGGQEPGSIEESIQNMVCTRFKAEYPIFDKVDVNGDNAAPLYKFLKSSKGGFFGDSIKWNFSKFLVDKEGNVVDRYSP 152          
BLAST of DY271340 vs. ExPASy Swiss-Prot
Match: GPX4_SOLLC (Probable phospholipid hydroperoxide glutathione peroxidase OS=Solanum lycopersicum GN=GPXle-1 PE=2 SV=1)

HSP 1 Score: 207.994 bits (528), Expect = 6.890e-53
Identity = 92/135 (68.15%), Postives = 116/135 (85.93%), Query Frame = 2
Query:  293 QDARGHEVDLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNGEHASPLYKLLKLGKWGIFGDDIQWNFAKFLVDKNGEVVDRYHP 697
            +DA+G +VDLS YKGKVL+IVNVAS+CG+TNSNY ++++LY KYKDQGLEILAFPCNQFG +EPG+ + I   VCTRFK+E+PIF+K+DVNG++A+PLY+ LK  K G FGD I+WNF+KFL+DK G VVDRY P
Sbjct:   17 KDAKGKDVDLSIYKGKVLIIVNVASQCGLTNSNYTDMTELYKKYKDQGLEILAFPCNQFGGQEPGNIEDIQQMVCTRFKAEYPIFDKVDVNGDNAAPLYRFLKSSKGGFFGDGIKWNFSKFLIDKEGHVVDRYSP 151          
The following BLAST results are available for this feature:
BLAST of DY271340 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 111
Match NameE-valueIdentityDescription
GPX8_ARATH2.791e-6278.17Probable glutathione peroxidase 8 OS=Arabidopsis t... [more]
GPX4_CITSI7.865e-5771.13Probable phospholipid hydroperoxide glutathione pe... [more]
GPX4_MESCR1.483e-5571.85Probable phospholipid hydroperoxide glutathione pe... [more]
GPX1_HELAN2.530e-5571.11Glutathione peroxidase 1 OS=Helianthus annuus GN=G... [more]
GPX4_SPIOL7.361e-5568.89Probable phospholipid hydroperoxide glutathione pe... [more]
GPX6_ARATH9.614e-5567.61Probable phospholipid hydroperoxide glutathione pe... [more]
GPX4_NICSY2.142e-5470.37Probable phospholipid hydroperoxide glutathione pe... [more]
GPX4_TOBAC3.653e-5469.63Probable phospholipid hydroperoxide glutathione pe... [more]
GPX4_GOSHI4.039e-5369.85Probable phospholipid hydroperoxide glutathione pe... [more]
GPX4_SOLLC6.890e-5368.15Probable phospholipid hydroperoxide glutathione pe... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP9YK12FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY271340 ID=DY271340; Name=DY271340; organism=Citrus clementina; type=EST; length=983bp
CATTTTTGTCAGAAACCTTTTCCTTCGTCTTTTAAAGAGCAGAGCAGATA
ATAGGATGACAAGCCAGTTTATACAAAACCCGGAGTCAATTTTTGACTTA
TCTGTCAAGAGGAGGATAGATGGTTCATACGTGGTTCTGCTTGGTGTGGT
TATGGGGTCGTCGCTTCGGGAAAGAAATAAATTAAATCTTAAATTTAATT
GATCAAAAATCATCATTTATTTCCTATTACAGTAATGTTTTTAGGAGTTT
TATTTATTTATTTATTTTATTATTATTATTATTGGCCACTCGCAGGATGC
CAGAGGCCATGAGGTAGATCTCAGCACATACAAAGGCAAAGTCTTACTCA
TAGTTAATGTTGCTTCAAAATGTGGGATGACCAATTCGAATTACATAGAG
CTAAGTCAGTTATATGACAAATACAAAGATCAAGGCTTAGAGATTCTGGC
ATTTCCATGCAATCAATTTGGTGAAGAGGAACCAGGAAGTAATGATCAGA
TCGCAGATTTTGTCTGCACTCGCTTCAAATCAGAGTTTCCAATTTTTGAA
AAGATTGATGTAAATGGTGAACATGCTTCTCCACTTTACAAGCTCTTGAA
GTTGGGTAAATGGGGTATTTTTGGGGATGATATTCAGTGGAACTTCGCCA
AGTTCCTAGTTGATAAGAATGGAGAAGTTGTTGATCGTTACCACCCCCAA
CTTCTCCGCTTAGCCTTGAGCGTGAATCAAGAAGGCTCTTGGGCCTCTCG
TGACTAATCAAATGAAGGTTATTAGTGAAAAGGGTGTTGGGCAAGAATGG
ATCCATTTGCTTCAATTTTCTTTTAACCCCCAAAAAAATGTTTTTAAAAT
TGGTTAAGGATTGGGGAACCCGGGGGCCGTTAGGGAGGGGGGGGGTGGCA
GCGACAAAAAGTCAAAAAATCAGAAAATTTCCGTTGGTCTTTCGGGGAAA
AAACCGCCATGAAGAAAAAAGGGGAATTTTCAC
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