DY271342

Overview
NameDY271342
Unique NameDY271342
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1021
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY271342 vs. ExPASy Swiss-Prot
Match: ARP8_ARATH (Actin-related protein 8 OS=Arabidopsis thaliana GN=ARP8 PE=2 SV=1)

HSP 1 Score: 351.673 bits (901), Expect = 4.061e-96
Identity = 174/276 (63.04%), Postives = 215/276 (77.90%), Query Frame = 2
Query:   68 LLRRVWETMSSRTCSTGDS-------SARPSCTTESSSLGAFDQIPWDVLIQIVKLIGPKEAAKLCVVSKSWRALVSDNRLWIFFLQHQQEPWDSIFFGETTLGSGYPYQTLATG---LSFMHIYGQRAQVPGSVIIDGGSGYCKFGWSKYDCPSGRTATFLEFGNIESPMYSRLRHFFATIYSRMQVKPSTQPIVVSIPICHYDDTENAKASRPQLKDCFQQVLFDLNVPAVCAVNQATLGFNAAKPTFGIVVNIGFQVTSVVPI*HGKVMAQGG 865
            +L++VW ++ +R+ S  D           P   + SSSLGAFDQ+P D+L+QI+ ++ PK+A KL +  K+W+ + S NRLWIF+LQ  QEPWDSIFF ET+L SGYP + +++    LSFMHIY QRAQVPGS+IIDGGSGYCKFGWSKY  PSGR+ATFLEFGNIESP+Y+RL+ FFATI++RMQVKPS QPIVVS+P+CH+DDTE+AKASR QLK     VLFD+NVPAVCAVNQA L   AA+ T GIVVNIGFQV +++PI HGKVM Q G
Sbjct:    2 ILKKVWGSVWNRSNSGKDLVNHQRAIDVPPLLLSSSSSLGAFDQLPMDILVQILMMMEPKDAVKLGLTCKAWKCVASGNRLWIFYLQCSQEPWDSIFFAETSLRSGYPLRMISSQSGELSFMHIYSQRAQVPGSIIIDGGSGYCKFGWSKYASPSGRSATFLEFGNIESPIYARLQQFFATIFTRMQVKPSMQPIVVSLPLCHFDDTESAKASRRQLKTAIFNVLFDMNVPAVCAVNQAVLALYAARRTSGIVVNIGFQVITILPILHGKVMRQVG 277          
BLAST of DY271342 vs. ExPASy Swiss-Prot
Match: ARP8_ORYSJ (Actin-related protein 8 OS=Oryza sativa subsp. japonica GN=ARP8 PE=2 SV=1)

HSP 1 Score: 316.62 bits (810), Expect = 1.448e-85
Identity = 163/291 (56.01%), Postives = 204/291 (70.10%), Query Frame = 2
Query:   68 LLRRVWETMSSRTCS---------TGDSSARPSCTTESSSLGAFDQIPWDVLIQIVKLIGPKEAAKLCVVSKSWRALVSDNRLWIFFLQHQQEPWDSIFFGETTLGSG---YP--YQTLATGLSFMHIYGQRAQVPGSVIIDGGSGYCKFGWSKYDCPSGRTATFLEFGNIESPMYSRLRHFFATIYSRMQVKPSTQPIVVSIPICHYDDTENAKASRPQLKDCFQQVLFDLNVPAVCAVNQATLGFNAAKPTFGIVVNIGFQVTSVVPI*HGKVMAQGGWGKYGEWGASK 898
            LLR+VW ++ +R  +            S  RP    E  SLGA D +P DVL QI++L+GP +AA+   V ++WR L SDN LW FFL+   +PW+ + F ET LG+G   +P  Y   +  LSF H+Y +RA VPGS+I+DGGSGYCK+GWSKY  PSGR ATFLEFGNIESPMY+RLRHF +TIY+RMQVKPSTQPI+V +P+CH DDTE+A+ASR Q +D    VLFD+NVPAVC+V+QA L   AAK T GIVVNIGF  TS+VPI  G+VM + G    G+ GA K
Sbjct:    4 LLRKVWGSVLARAAAGAAPPEAFAAAASPRRPQAAGEYGSLGALDVLPIDVLAQILRLLGPADAARSTAVCRAWRLLASDNGLWAFFLRLGPDPWELVVFAETHLGAGPALHPGLYYDSSPQLSFKHVYTRRAVVPGSIIVDGGSGYCKYGWSKYAAPSGRCATFLEFGNIESPMYARLRHFLSTIYTRMQVKPSTQPIIVVLPLCHSDDTESARASRKQYRDTLYSVLFDMNVPAVCSVDQAVLALYAAKRTSGIVVNIGFNATSIVPIFQGRVMHEIGVETVGQ-GALK 293          
BLAST of DY271342 vs. ExPASy Swiss-Prot
Match: ARP8_ORYSI (Actin-related protein 8 OS=Oryza sativa subsp. indica GN=ARP8 PE=2 SV=1)

HSP 1 Score: 316.62 bits (810), Expect = 1.448e-85
Identity = 163/291 (56.01%), Postives = 204/291 (70.10%), Query Frame = 2
Query:   68 LLRRVWETMSSRTCS---------TGDSSARPSCTTESSSLGAFDQIPWDVLIQIVKLIGPKEAAKLCVVSKSWRALVSDNRLWIFFLQHQQEPWDSIFFGETTLGSG---YP--YQTLATGLSFMHIYGQRAQVPGSVIIDGGSGYCKFGWSKYDCPSGRTATFLEFGNIESPMYSRLRHFFATIYSRMQVKPSTQPIVVSIPICHYDDTENAKASRPQLKDCFQQVLFDLNVPAVCAVNQATLGFNAAKPTFGIVVNIGFQVTSVVPI*HGKVMAQGGWGKYGEWGASK 898
            LLR+VW ++ +R  +            S  RP    E  SLGA D +P DVL QI++L+GP +AA+   V ++WR L SDN LW FFL+   +PW+ + F ET LG+G   +P  Y   +  LSF H+Y +RA VPGS+I+DGGSGYCK+GWSKY  PSGR ATFLEFGNIESPMY+RLRHF +TIY+RMQVKPSTQPI+V +P+CH DDTE+A+ASR Q +D    VLFD+NVPAVC+V+QA L   AAK T GIVVNIGF  TS+VPI  G+VM + G    G+ GA K
Sbjct:    4 LLRKVWGSVLARAAAGAAPPEAFAAAASPRRPQAAGEYGSLGALDVLPIDVLAQILRLLGPADAARSTAVCRAWRLLASDNGLWAFFLRLGPDPWELVVFAETHLGAGPALHPGLYYDSSPQLSFKHVYTRRAVVPGSIIVDGGSGYCKYGWSKYAAPSGRCATFLEFGNIESPMYARLRHFLSTIYTRMQVKPSTQPIIVVLPLCHSDDTESARASRKQYRDTLYSVLFDMNVPAVCSVDQAVLALYAAKRTSGIVVNIGFNATSIVPIFQGRVMHEIGVETVGQ-GALK 293          
The following BLAST results are available for this feature:
BLAST of DY271342 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
ARP8_ARATH4.061e-9663.04Actin-related protein 8 OS=Arabidopsis thaliana GN... [more]
ARP8_ORYSJ1.448e-8556.01Actin-related protein 8 OS=Oryza sativa subsp. jap... [more]
ARP8_ORYSI1.448e-8556.01Actin-related protein 8 OS=Oryza sativa subsp. ind... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAP9YK15FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY271342 ID=DY271342; Name=DY271342; organism=Citrus clementina; type=EST; length=1021bp
GAAAGAAAACAGATCAATTATCCTGGAAAATTCAAAACCGATGAGCTGAA
AGTGAAAGATGGCGATGTTGTTGAGAAGAGTATGGGAAACGATGTCGTCT
CGGACTTGTTCGACCGGCGACTCGTCCGCTCGGCCTAGTTGTACGACTGA
GTCGTCATCTTTAGGTGCATTTGATCAGATACCGTGGGATGTACTTATTC
AAATTGTGAAATTGATTGGTCCAAAGGAGGCGGCGAAGCTCTGTGTTGTC
AGCAAGTCGTGGCGCGCGCTTGTATCTGATAATCGTCTGTGGATTTTCTT
TCTACAGCATCAGCAAGAGCCGTGGGACTCCATTTTCTTCGGTGAAACAA
CTCTCGGATCGGGATATCCTTACCAAACTTTGGCGACTGGCTTATCATTC
ATGCATATTTATGGCCAACGGGCCCAAGTTCCTGGTTCTGTTATCATTGA
TGGTGGTTCAGGTTATTGCAAGTTTGGTTGGAGCAAGTATGATTGTCCTT
CTGGGCGAACAGCAACATTTTTGGAATTTGGCAATATTGAGTCTCCGATG
TACTCAAGACTTCGACATTTTTTTGCAACTATATACAGCAGGATGCAGGT
GAAACCATCCACGCAGCCAATTGTGGTGTCTATTCCAATCTGCCATTATG
ACGATACTGAAAATGCAAAAGCATCAAGACCGCAGCTTAAGGATTGCTTC
CAACAAGTCCTGTTTGACCTAAATGTTCCCGCTGTCTGTGCCGTCAATCA
GGCCACTTTGGGCTTTAATGCAGCCAAACCAACTTTCGGAATTGTTGTTA
ATATTGGTTTCCAGGTCACTTCTGTTGTTCCAATTTAACATGGTAAAGTA
ATGGCCCAGGGGGGGTGGGGAAAGTATGGGGAATGGGGAGCCTCAAAATC
TCCCAGGAAATTCTAAGGGTGCCGAATGCACAAAAAAAACTAAAAATTTT
TGGACCCCCGTACCACTTGTCCCCCCCTGGAAAAAAAAAACCATGTGTTA
GTCGCCGCCGGAATACAAACC
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