DY271345

Overview
NameDY271345
Unique NameDY271345
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1067
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY271345_ssr37 microsatellite DY271345_ssr37:37..48. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of DY271345 vs. ExPASy Swiss-Prot
Match: HS22C_PETHY (Small heat shock protein, chloroplastic OS=Petunia hybrida GN=HSP22 PE=2 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 6.995e-61
Identity = 101/178 (56.74%), Postives = 120/178 (67.42%), Query Frame = 1
Query:   52 LVSREARTSIARRNVAPCSVTLPATS---RKGAYRLQAVRAQAGGENKDTSVDVHVNSGNQG-----TQAERRPRRTALDILPFGLMDPSFPTRTMRQMLDTMDRLLEDTMAFPGRSRAGGGGQVRTPWDIKEEENEIKMRFDMPGLXXXXXXXXXXXXXLVIKGEHRAKEAGGDPSW 561
            +VS  +RT+  +   AP SV  P +    RK A RL A   QA G+NKDTSVDVHV++ NQG     +  ERRPRR ALD+ PFGL+DP  P RTMRQM+DTMDRL EDTM FPG SR  G G++R PWDIK++ENEIKMRFDMPGL             LVIKGEH+ +E+G D SW
Sbjct:   18 VVSATSRTNNKKTTTAPFSVCFPYSKCSVRKPASRLVA---QATGDNKDTSVDVHVSNNNQGGNNQGSAVERRPRRMALDVSPFGLLDPMSPMRTMRQMMDTMDRLFEDTMTFPG-SRNRGTGEIRAPWDIKDDENEIKMRFDMPGLSKEEVKVSVEDDVLVIKGEHKKEESGKDDSW 191          

HSP 2 Score: 72.7886 bits (177), Expect = 6.995e-61
Identity = 35/50 (70.00%), Postives = 44/50 (88.00%), Query Frame = 3
Query:  564 WG-NFNSYNTRLQLPENREKDKVKAKLKNGVLYISIPKTNVERKVIEVQI 710
            WG N++SY+TRL LP+N +KDKVKA+LKNGVL ISIPKT VE+KV +V+I
Sbjct:  191 WGRNYSSYDTRLSLPDNVDKDKVKAELKNGVLLISIPKTKVEKKVTDVEI 240          
BLAST of DY271345 vs. ExPASy Swiss-Prot
Match: HS21C_SOLLC (Small heat shock protein, chloroplastic OS=Solanum lycopersicum GN=HSP21 PE=2 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 4.482e-60
Identity = 100/180 (55.56%), Postives = 120/180 (66.67%), Query Frame = 1
Query:   49 PLVSREARTSIARRN----VAPCSVTLPATSRKGAYRLQAVRAQAGGENKDTSVDVHVNSG----NQGTQAERRPRRTALDILPFGLMDPSFPTRTMRQMLDTMDRLLEDTMAFPGRSRAGGGGQVRTPWDIKEEENEIKMRFDMPGLXXXXXXXXXXXXXLVIKGEHRAKEAGGDP-SW 561
            PLVS  +    ++ N     APCSV +P+  R+   RL A   +A G+NKDTSVDVH +S     NQGT  ERRP R ALD+ PFG++DP  P RTMRQM+DTMDRL EDTM FPGR+RA G G++RTPWDI ++ENEIKMRFDMPGL             LVIKGEH+ +E G D  SW
Sbjct:   10 PLVSNVSVGGTSKINNNKVSAPCSVFVPSM-RRPTTRLVA---RATGDNKDTSVDVHHSSAQGGNNQGTAVERRPTRMALDVSPFGVLDPMSPMRTMRQMIDTMDRLFEDTMTFPGRNRASGTGEIRTPWDIHDDENEIKMRFDMPGLSKEDVKVSVENDMLVIKGEHKKEEDGRDKHSW 185          

HSP 2 Score: 75.485 bits (184), Expect = 4.482e-60
Identity = 36/50 (72.00%), Postives = 45/50 (90.00%), Query Frame = 3
Query:  564 WG-NFNSYNTRLQLPENREKDKVKAKLKNGVLYISIPKTNVERKVIEVQI 710
            WG N++SY+TRL LP+N  KDK+KA+LKNGVL+ISIPKT VE+KVI+VQI
Sbjct:  185 WGRNYSSYDTRLSLPDNVVKDKIKAELKNGVLFISIPKTEVEKKVIDVQI 234          
BLAST of DY271345 vs. ExPASy Swiss-Prot
Match: HS22C_SOYBN (Small heat shock protein, chloroplastic (Fragment) OS=Glycine max GN=HSP22 PE=2 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 1.825e-55
Identity = 80/133 (60.15%), Postives = 101/133 (75.94%), Query Frame = 1
Query:  172 GGENKDTSVDV-HVNSGNQGTQAERRPRRTALDILPFGLMDPSFPTRTMRQMLDTMDRLLEDTMAFPGRSRAGGGGQVRTPWDIKEEENEIKMRFDMPGLXXXXXXXXXXXXXLVIKGEHRA-KEAGGDPSWS 564
            GG+NKD SV+V HV+ G+QGT  E++PRRTA+DI PFG++DP  P R+MRQ+LDTMDR+ EDTM FPGR+   GGG++R PWDIK+EE+EI+MRFDMPGL             LVIKG H++ +E GGD SWS
Sbjct:    1 GGDNKDNSVEVQHVSKGDQGTAVEKKPRRTAMDISPFGILDPWSPMRSMRQILDTMDRVFEDTMTFPGRNI--GGGEIRAPWDIKDEEHEIRMRFDMPGLAKEDVKVSVEDDMLVIKGGHKSEQEHGGDDSWS 131          

HSP 2 Score: 75.8702 bits (185), Expect = 1.825e-55
Identity = 35/46 (76.09%), Postives = 44/46 (95.65%), Query Frame = 3
Query:  573 FNSYNTRLQLPENREKDKVKAKLKNGVLYISIPKTNVERKVIEVQI 710
            ++SY+TRL+LP+N EKDKVKA+LKNGVLYI+IPKT VERKVI+VQ+
Sbjct:  135 YSSYDTRLKLPDNCEKDKVKAELKNGVLYITIPKTKVERKVIDVQV 180          
BLAST of DY271345 vs. ExPASy Swiss-Prot
Match: HS21C_PEA (Small heat shock protein, chloroplastic OS=Pisum sativum GN=HSP21 PE=2 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 7.444e-54
Identity = 86/175 (49.14%), Postives = 119/175 (68.00%), Query Frame = 1
Query:   49 PLVSREARTSIARRNVAPCSVTLPATSRKGAYRLQAVRAQAGGE--NKDTSVDVH-VNSGNQGTQAERRPRRTALDILPFGLMDPSFPTRTMRQMLDTMDRLLEDTMAFPGRSRAGGGGQVRTPWDIKEEENEIKMRFDMPGLXXXXXXXXXXXXXLVIKGEHRAKEAGGDPSWS 564
            P++S++  +S+  ++  PC  + P   +     L+ VRAQAGG+  NKD SV+VH VN  +QGT  ER+PRR+++DI PFGL+DP  P R+MRQMLDTMDR+ ED +  PGR+   GGG++R PW+IK+EE+EI+MRFDMPG+             LVIK +HR +E GG+  WS
Sbjct:   13 PILSQKPGSSV--KSTPPCMASFPLRRQLPRLGLRNVRAQAGGDGDNKDNSVEVHRVNKDDQGTAVERKPRRSSIDISPFGLLDPWSPMRSMRQMLDTMDRIFEDAITIPGRNI--GGGEIRVPWEIKDEEHEIRMRFDMPGVSKEDVKVSVEDDVLVIKSDHR-EENGGEDCWS 182          

HSP 2 Score: 68.5514 bits (166), Expect = 7.444e-54
Identity = 31/47 (65.96%), Postives = 43/47 (91.49%), Query Frame = 3
Query:  570 NFNSYNTRLQLPENREKDKVKAKLKNGVLYISIPKTNVERKVIEVQI 710
            +++ Y+TRL+LP+N EK+KVKA+LK+GVLYI+IPKT +ER VI+VQI
Sbjct:  185 SYSCYDTRLKLPDNCEKEKVKAELKDGVLYITIPKTKIERTVIDVQI 231          
BLAST of DY271345 vs. ExPASy Swiss-Prot
Match: HS25P_ARATH (25.3 kDa heat shock protein, chloroplastic OS=Arabidopsis thaliana GN=HSP25.3 PE=2 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 1.764e-49
Identity = 82/166 (49.40%), Postives = 103/166 (62.05%), Query Frame = 1
Query:   76 SIARRNVAPCSVTLPATSRKGAYRLQAVRAQAGGENKDTSVDVHVNSGNQGTQAERRPR-RTALDILPFGLMDPSFPTRTMRQMLDTMDRLLEDTMAFPGRSRAGGG-GQVRTPWDIKEEENEIKMRFDMPGLXXXXXXXXXXXXXLVIKGEHRAKEAGGDPSWSG 567
            S++ ++  P SV+ P   RK   R   +RAQ   EN    V      GNQG+  E+RP+ R  +D+ PFGL+DP  P RTMRQMLDTMDR+ EDTM   GR+R G G  ++R PWDIKEEE+EIKMRFDMPGL             LVIKGE + +++  D SWSG
Sbjct:   21 SVSSKSATPFSVSFP---RKIPSR---IRAQDQRENSIDVVQQGQQKGNQGSSVEKRPQQRLTMDVSPFGLLDPLSPMRTMRQMLDTMDRMFEDTMPVSGRNRGGSGVSEIRAPWDIKEEEHEIKMRFDMPGLSKEDVKISVEDNVLVIKGEQKKEDS--DDSWSG 178          

HSP 2 Score: 74.3294 bits (181), Expect = 1.764e-49
Identity = 35/45 (77.78%), Postives = 42/45 (93.33%), Query Frame = 3
Query:  576 NSYNTRLQLPENREKDKVKAKLKNGVLYISIPKTNVERKVIEVQI 710
            +SY TRLQLP+N EKDK+KA+LKNGVL+I+IPKT VERKVI+VQI
Sbjct:  182 SSYGTRLQLPDNCEKDKIKAELKNGVLFITIPKTKVERKVIDVQI 226          
BLAST of DY271345 vs. ExPASy Swiss-Prot
Match: HS21C_WHEAT (Small heat shock protein, chloroplastic OS=Triticum aestivum GN=HSP21 PE=2 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 6.887e-42
Identity = 85/181 (46.96%), Postives = 98/181 (54.14%), Query Frame = 1
Query:   52 LVSREARTSIARRNVAPCSVTLPATSRKGAYRLQAVRAQAGGENKDTSVDVHV----NSGNQ-GTQAERRPRRTALDILPFGLMDPSFPTRTMRQMLDTMDRLLEDTMAFPGRSRAGGGGQVRTPWDIKEEENEIKMRFDMPGLXXXXXXXXXXXXXLVIKGEHRAKEA------GGDPSW 561
            LVSR   +  AR  +       PA    G        A A  EN+D SVDV V    N+GNQ G   +RRPRR   DI PFGL+DP  P RTMRQMLDTMDRL +D + FP R       + R PWDI E+E E+KMRFDMPGL             LVI+GEH+ KEA      GGD  W
Sbjct:   10 LVSR--LSPAARLPIRAWRAARPAPLSTGGRTRPLSVASAAQENRDNSVDVQVSQAQNAGNQQGNAVQRRPRRAGFDISPFGLVDPMSPMRTMRQMLDTMDRLFDDAVGFPTRRSPAARARRRMPWDIMEDEKEVKMRFDMPGLSREEVRVMVEDDALVIRGEHK-KEAGEGQGEGGDGWW 187          

HSP 2 Score: 56.6102 bits (135), Expect = 6.887e-42
Identity = 25/45 (55.56%), Postives = 36/45 (80.00%), Query Frame = 3
Query:  576 NSYNTRLQLPENREKDKVKAKLKNGVLYISIPKTNVERKVIEVQI 710
            +SY+ RL LP+  +K +V+A+LKNGVL +S+PK   ERKVI+VQ+
Sbjct:  193 SSYDMRLALPDECDKSQVRAELKNGVLLVSVPKRETERKVIDVQV 237          
BLAST of DY271345 vs. ExPASy Swiss-Prot
Match: HS26P_ORYSJ (26.7 kDa heat shock protein, chloroplastic OS=Oryza sativa subsp. japonica GN=HSP26.7 PE=2 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 4.753e-40
Identity = 85/175 (48.57%), Postives = 105/175 (60.00%), Query Frame = 1
Query:   55 VSREARTSI--ARRNVAPCSVTLPATSRKGAYRLQAVRAQAGGENKD-TSVDVHVNS--GNQ-GTQAERRPRRT-ALD-ILPFGLMDPSFPTRTMRQMLDTMDRLLEDT-MAFPGRSRAG-GGGQVRTPWDIKEEENEIKMRFDMPGLXXXXXXXXXXXXXLVIKGEHRAKEAGG 549
            VS  AR  I  A R   P +V LP++ R      Q   A A  EN+D T+VDVHVN   GNQ G   +RRPRR+ ALD I PFGL+DP  P RTMRQMLDTMDR+ +D  + FP   R     G+VR PWD+ E++ E++MRFDMPGL             LVI+GEH+ +E  G
Sbjct:   11 VSPAARLPIRAAWRRARP-TVGLPSSGRAR----QLAVASAAQENRDNTAVDVHVNQDGGNQQGNAVQRRPRRSSALDGISPFGLVDPMSPMRTMRQMLDTMDRIFDDVALGFPATPRRSLATGEVRMPWDVMEDDKEVRMRFDMPGLSREEVKVMVEDDALVIRGEHKKEEGEG 180          

HSP 2 Score: 60.8474 bits (146), Expect = 4.753e-40
Identity = 27/45 (60.00%), Postives = 38/45 (84.44%), Query Frame = 3
Query:  576 NSYNTRLQLPENREKDKVKAKLKNGVLYISIPKTNVERKVIEVQI 710
            +SY+ RL LP+  +K KV+A+LKNGVL +++PKT VERKVI+VQ+
Sbjct:  195 SSYDMRLALPDECDKSKVRAELKNGVLLVTVPKTEVERKVIDVQV 239          
BLAST of DY271345 vs. ExPASy Swiss-Prot
Match: HS22M_PEA (Heat shock 22 kDa protein, mitochondrial OS=Pisum sativum GN=HSP22 PE=2 SV=1)

HSP 1 Score: 56.9954 bits (136), Expect = 1.382e-12
Identity = 45/141 (31.91%), Postives = 65/141 (46.10%), Query Frame = 1
Query:  121 ATSRKGAYRLQAVRAQAGGENKDTSVDVHVNSGNQGTQAERRPRRTALDILPFGLMDPSFPTRTMRQMLDTMDRLLEDTMAFPGRSRAGGGGQVRTPWDIKEEENEIKMRFDMPGLXXXXXXXXXXXXXLVIKGEHRAKEA 543
            A+S   ++   A+R Q    + D +VDV+ +S          PR    D+L   + DP  P R++ Q+L+ +D LL D       SR G        WD +E E+ + +R DMPGL             L IKGE  AKE+
Sbjct:   25 ASSASRSFNTNAMR-QYDQHSDDRNVDVYRHSF---------PRTRRDDLLLSDVFDPFSPPRSLSQVLNMVD-LLTDNPVLSAASRRG--------WDARETEDALFLRLDMPGLGKEDVKISVEQNTLTIKGEEGAKES 146          

HSP 2 Score: 37.3502 bits (85), Expect = 1.382e-12
Identity = 19/46 (41.30%), Postives = 32/46 (69.57%), Query Frame = 3
Query:  582 YNTRLQLPENREK-DKVKAKLKNGVLYISIPKTNVERK--VIEVQI 710
            +++R+ LPE   K D +KA++KNGVL +++PK   E +  VI V++
Sbjct:  156 FSSRIDLPEKLYKIDVIKAEMKNGVLKVTVPKMKEEERNNVINVKV 201          
BLAST of DY271345 vs. ExPASy Swiss-Prot
Match: HS23C_CHERU (Small heat shock protein, chloroplastic OS=Chenopodium rubrum GN=HSP23 PE=2 SV=1)

HSP 1 Score: 52.373 bits (124), Expect = 3.176e-11
Identity = 26/81 (32.10%), Postives = 44/81 (54.32%), Query Frame = 1
Query:  283 LMDPSFPTRTMRQMLDTMDRLLEDTMAFPGRSRAGGGGQVRTPWDIKEEENEIKMRFDMPGLXXXXXXXXXXXXXLVIKGE 525
            + DP   TR++ Q+++ MD+L+E+      R   G G  +R  WD++E+E  ++++ DMPGL             L+IK E
Sbjct:   67 VFDPFRATRSVGQLMNLMDQLMENPFMAASR---GSGRAMRRGWDVREDEEALELKVDMPGLAKEDVKVSVEDNTLIIKSE 144          

HSP 2 Score: 37.3502 bits (85), Expect = 3.176e-11
Identity = 18/45 (40.00%), Postives = 30/45 (66.67%), Query Frame = 3
Query:  582 YNTRLQLPENREK-DKVKAKLKNGVLYISIPKTNVERKVIEVQIL 713
            Y++R++L  N  K D +KA++KNGVL +++PK   E K    Q++
Sbjct:  158 YSSRIELTPNLYKIDGIKAEMKNGVLKVTVPKIKEEEKKDVFQVM 202          
The following BLAST results are available for this feature:
BLAST of DY271345 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
HS22C_PETHY6.995e-6156.74Small heat shock protein, chloroplastic OS=Petunia... [more]
HS21C_SOLLC4.482e-6055.56Small heat shock protein, chloroplastic OS=Solanum... [more]
HS22C_SOYBN1.825e-5560.15Small heat shock protein, chloroplastic (Fragment)... [more]
HS21C_PEA7.444e-5449.14Small heat shock protein, chloroplastic OS=Pisum s... [more]
HS25P_ARATH1.764e-4949.4025.3 kDa heat shock protein, chloroplastic OS=Arab... [more]
HS21C_WHEAT6.887e-4246.96Small heat shock protein, chloroplastic OS=Triticu... [more]
HS26P_ORYSJ4.753e-4048.5726.7 kDa heat shock protein, chloroplastic OS=Oryz... [more]
HS22M_PEA1.382e-1231.91Heat shock 22 kDa protein, mitochondrial OS=Pisum ... [more]
HS23C_CHERU3.176e-1132.10Small heat shock protein, chloroplastic OS=Chenopo... [more]
back to top
Properties
Property NameValue
Genbank descriptionKN0AAP9YK18FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY271345 ID=DY271345; Name=DY271345; organism=Citrus clementina; type=EST; length=1067bp
CAAAGTGAAAATATTATGGCTGCAACATTATCTATCTCATCATCATCACC
CTTGGTATCGCGCGAGGCCAGGACCTCAATAGCTAGGAGAAATGTGGCGC
CATGCTCGGTAACCTTACCGGCAACGTCAAGGAAAGGCGCCTATCGGCTA
CAAGCCGTGAGAGCTCAGGCTGGTGGGGAGAACAAGGATACTTCGGTTGA
CGTCCATGTTAATTCCGGTAACCAAGGAACCCAAGCGGAGAGGAGGCCTC
GAAGAACGGCTCTCGATATTTTACCTTTCGGTTTGATGGATCCCTCGTTT
CCAACGAGGACAATGCGGCAGATGCTGGACACAATGGACCGTCTATTAGA
GGATACGATGGCTTTTCCGGGGAGGAGCCGGGCTGGCGGGGGAGGCCAGG
TGAGAACACCGTGGGACATCAAAGAGGAGGAAAATGAGATCAAAATGAGA
TTTGACATGCCTGGACTCTCTAAGGAGGATGTCAAAGTGTCGGTGGAAGA
TGATGTCCTTGTCATTAAAGGAGAGCACAGGGCAAAAGAAGCTGGAGGTG
ATCCGAGTTGGTCTGGGGCAATTTTAACTCTTACAATACTCGTCTCCAGC
TTCCTGAAAACCGTGAAAAAGATAAGGTCAAGGCAAAGCTCAAGAATGGT
GTTCTTTACATTTCAATTCCTAAAACCAATGTGGAACGCAAGGTCATTGA
GGTTCAAATTCTGTAATTTAAAAGAATGTGGGCCAACGCAAAGGGGATTT
AAAGGTTTTGGGACCAAACTGTCCCGCTTTTTTATGTGCAAAAAAAATTG
AAAATTTTGTTAAAAAAAAAAAAAAAAAAAAACCCCCCTTCTTTTGAAAA
AGTGGGTTTTTAAAAAAAACGTTTTTTTATATTTTTGTGAAAAAAAAGGG
TAATTTTCAGTAAAAAAAAAAATTTTTTTCCCCCCACCCCGAAAACCCCC
AAAAGTGGGGCAAAATAGAGGGGACACCTTTTTTCCGGGCCTCCTCGCCC
CCTGTGCCCAATACTTGCTGAGGTGGATCTCGGCGCTAAAAAAAAAATAC
TATCCCCCGTGGAAAAA
back to top