DY271348

Overview
NameDY271348
Unique NameDY271348
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length980
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig3898 contig Ccv1_Contig3898:1..980. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY271348 vs. ExPASy Swiss-Prot
Match: YTHD1_MOUSE (YTH domain family protein 1 OS=Mus musculus GN=Ythdf1 PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.542e-20
Identity = 44/87 (50.57%), Postives = 64/87 (73.56%), Query Frame = 1
Query:    1 DRWIGQFPVKWLIIKDVPNSRFRHLLLENNDNKPVTHSRDSQEVKLEQGVEMLRIFKEHDARTSILDDFDFYDERERSLKERRAKQQ 261
            D+W G+F VKW+ +KDVPN++ RH+ LENNDNKPVT+SRD+QEV LE+  ++L+I   +   TSI DDF  Y++R+   +  R ++Q
Sbjct:  468 DKWKGKFDVKWIFVKDVPNNQLRHIRLENNDNKPVTNSRDTQEVPLEKAKQVLKIIASYKHTTSIFDDFSHYEKRQEEEEVVRKERQ 554          
BLAST of DY271348 vs. ExPASy Swiss-Prot
Match: YTHD2_MACFA (YTH domain family protein 2 OS=Macaca fascicularis GN=YTHDF2 PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 3.435e-20
Identity = 45/86 (52.33%), Postives = 64/86 (74.42%), Query Frame = 1
Query:    1 DRWIGQFPVKWLIIKDVPNSRFRHLLLENNDNKPVTHSRDSQEVKLEQGVEMLRIFKEHDARTSILDDFDFYDER---ERSLKERR 249
            D+W G+F V+W+ +KDVPNS+ RH+ LENN+NKPVT+SRD+QEV LE+  ++L+I   +   TSI DDF  Y++R   E S+K+ R
Sbjct:  489 DKWKGRFDVRWIFVKDVPNSQLRHIRLENNENKPVTNSRDTQEVPLEKAKQVLKIIASYKHTTSIFDDFSHYEKRQEEEESVKKER 574          
BLAST of DY271348 vs. ExPASy Swiss-Prot
Match: YTHD2_HUMAN (YTH domain family protein 2 OS=Homo sapiens GN=YTHDF2 PE=1 SV=2)

HSP 1 Score: 99.3673 bits (246), Expect = 3.435e-20
Identity = 45/86 (52.33%), Postives = 64/86 (74.42%), Query Frame = 1
Query:    1 DRWIGQFPVKWLIIKDVPNSRFRHLLLENNDNKPVTHSRDSQEVKLEQGVEMLRIFKEHDARTSILDDFDFYDER---ERSLKERR 249
            D+W G+F V+W+ +KDVPNS+ RH+ LENN+NKPVT+SRD+QEV LE+  ++L+I   +   TSI DDF  Y++R   E S+K+ R
Sbjct:  489 DKWKGRFDVRWIFVKDVPNSQLRHIRLENNENKPVTNSRDTQEVPLEKAKQVLKIIASYKHTTSIFDDFSHYEKRQEEEESVKKER 574          
BLAST of DY271348 vs. ExPASy Swiss-Prot
Match: YTHD2_BOVIN (YTH domain family protein 2 OS=Bos taurus GN=YTHDF2 PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 3.435e-20
Identity = 45/86 (52.33%), Postives = 64/86 (74.42%), Query Frame = 1
Query:    1 DRWIGQFPVKWLIIKDVPNSRFRHLLLENNDNKPVTHSRDSQEVKLEQGVEMLRIFKEHDARTSILDDFDFYDER---ERSLKERR 249
            D+W G+F V+W+ +KDVPNS+ RH+ LENN+NKPVT+SRD+QEV LE+  ++L+I   +   TSI DDF  Y++R   E S+K+ R
Sbjct:  490 DKWKGRFDVRWIFVKDVPNSQLRHIRLENNENKPVTNSRDTQEVPLEKAKQVLKIIASYKHTTSIFDDFSHYEKRQEEEESVKKER 575          
BLAST of DY271348 vs. ExPASy Swiss-Prot
Match: YTHD1_HUMAN (YTH domain family protein 1 OS=Homo sapiens GN=YTHDF1 PE=1 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 5.859e-20
Identity = 43/87 (49.43%), Postives = 64/87 (73.56%), Query Frame = 1
Query:    1 DRWIGQFPVKWLIIKDVPNSRFRHLLLENNDNKPVTHSRDSQEVKLEQGVEMLRIFKEHDARTSILDDFDFYDERERSLKERRAKQQ 261
            D+W G+F V+W+ +KDVPN++ RH+ LENNDNKPVT+SRD+QEV LE+  ++L+I   +   TSI DDF  Y++R+   +  R ++Q
Sbjct:  468 DKWKGKFDVQWIFVKDVPNNQLRHIRLENNDNKPVTNSRDTQEVPLEKAKQVLKIISSYKHTTSIFDDFAHYEKRQEEEEVVRKERQ 554          
BLAST of DY271348 vs. ExPASy Swiss-Prot
Match: YTHD3_PONAB (YTH domain family protein 3 OS=Pongo abelii GN=YTHDF3 PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 1.305e-19
Identity = 43/86 (50.00%), Postives = 62/86 (72.09%), Query Frame = 1
Query:    1 DRWIGQFPVKWLIIKDVPNSRFRHLLLENNDNKPVTHSRDSQEVKLEQGVEMLRIFKEHDARTSILDDFDFYDERERSLKERRAKQ 258
            D+W G+F VKW+ +KDVPN++ RH+ LENNDNKPVT+SRD+QEV LE+  ++L+I       TSI DDF  Y++R+   +  R ++
Sbjct:  495 DKWKGKFEVKWIFVKDVPNNQLRHIRLENNDNKPVTNSRDTQEVPLEKAKQVLKIIATFKHTTSIFDDFAHYEKRQEEEEAMRRER 580          
BLAST of DY271348 vs. ExPASy Swiss-Prot
Match: YTHD3_MOUSE (YTH domain family protein 3 OS=Mus musculus GN=Ythdf3 PE=1 SV=2)

HSP 1 Score: 97.4413 bits (241), Expect = 1.305e-19
Identity = 43/86 (50.00%), Postives = 62/86 (72.09%), Query Frame = 1
Query:    1 DRWIGQFPVKWLIIKDVPNSRFRHLLLENNDNKPVTHSRDSQEVKLEQGVEMLRIFKEHDARTSILDDFDFYDERERSLKERRAKQ 258
            D+W G+F VKW+ +KDVPN++ RH+ LENNDNKPVT+SRD+QEV LE+  ++L+I       TSI DDF  Y++R+   +  R ++
Sbjct:  495 DKWKGKFEVKWIFVKDVPNNQLRHIRLENNDNKPVTNSRDTQEVPLEKAKQVLKIIATFKHTTSIFDDFAHYEKRQEEEEAMRRER 580          
BLAST of DY271348 vs. ExPASy Swiss-Prot
Match: YTHD3_HUMAN (YTH domain family protein 3 OS=Homo sapiens GN=YTHDF3 PE=1 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 1.305e-19
Identity = 43/86 (50.00%), Postives = 62/86 (72.09%), Query Frame = 1
Query:    1 DRWIGQFPVKWLIIKDVPNSRFRHLLLENNDNKPVTHSRDSQEVKLEQGVEMLRIFKEHDARTSILDDFDFYDERERSLKERRAKQ 258
            D+W G+F VKW+ +KDVPN++ RH+ LENNDNKPVT+SRD+QEV LE+  ++L+I       TSI DDF  Y++R+   +  R ++
Sbjct:  495 DKWKGKFEVKWIFVKDVPNNQLRHIRLENNDNKPVTNSRDTQEVPLEKAKQVLKIIATFKHTTSIFDDFAHYEKRQEEEEAMRRER 580          
The following BLAST results are available for this feature:
BLAST of DY271348 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
YTHD1_MOUSE1.542e-2050.57YTH domain family protein 1 OS=Mus musculus GN=Yth... [more]
YTHD2_MACFA3.435e-2052.33YTH domain family protein 2 OS=Macaca fascicularis... [more]
YTHD2_HUMAN3.435e-2052.33YTH domain family protein 2 OS=Homo sapiens GN=YTH... [more]
YTHD2_BOVIN3.435e-2052.33YTH domain family protein 2 OS=Bos taurus GN=YTHDF... [more]
YTHD1_HUMAN5.859e-2049.43YTH domain family protein 1 OS=Homo sapiens GN=YTH... [more]
YTHD3_PONAB1.305e-1950.00YTH domain family protein 3 OS=Pongo abelii GN=YTH... [more]
YTHD3_MOUSE1.305e-1950.00YTH domain family protein 3 OS=Mus musculus GN=Yth... [more]
YTHD3_HUMAN1.305e-1950.00YTH domain family protein 3 OS=Homo sapiens GN=YTH... [more]
back to top
Properties
Property NameValue
Genbank descriptionKN0AAP9YK22FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY271348 ID=DY271348; Name=DY271348; organism=Citrus clementina; type=EST; length=980bp
GATAGGTGGATTGGGCAGTTCCCAGTGAAATGGCTTATTATCAAAGATGT
TCCTAACAGTCGATTTCGCCACTTGCTTCTTGAAAATAATGATAACAAGC
CTGTAACTCACAGCCGAGATTCTCAAGAGGTGAAATTAGAACAGGGTGTT
GAGATGTTGAGAATTTTTAAGGAGCATGATGCACGTACATCTATTTTAGA
TGATTTTGACTTCTATGATGAGCGAGAGAGATCTCTGAAAGAAAGGAGGG
CCAAACAACAAGTTAGCCTGACAAAAGGTGCTCCAGATTTACTTGCCAAT
GATTCTATGAACCAAATTTCAGATAGGTTAGCTCAAAGCCTCCGGTTGCA
AGACACTGTTGAAGAAACTCCAGCAAGTATTATTGGTGCTGTCTCAAGAA
CTGATGTTTCAGGTTCACTTGCTAATGATTCCATAAATACAATTTCTGAT
AGCTACTCTGAAGCTGTCGAGTCGGGATACAAGAGTAACAAAGAGATATT
CACAACTGAAACAGGTAGTGAGAATCAGAATTAAGGCAGACGGTAAGACC
TAGAAAATTATGTAGACAGCTAGGTGCAATGTTGAAGGTGCTACTGGGGT
CTTTGGCATGCTTGCTGTAACCCGACAAACAAACTCTTTGTTCTCTTGGT
GATTCTATAATTCTTTTTCTTTTCCGTTTTTCCCCTGCTTACTAACAACA
TTGACGCAGTATATCTGGGAATTTAAGGAGTCAGCTAGAATCTGACTGTG
CTTTTTGTTTTCTCTTTGTTCCTTCTTTGGCAATTCCTCAAAAACAGTTC
CGAGTCAATCCGGATCGGCCCAAGGCAAAAGGTAGTCTGATATCCGACTT
GTTTAAATTTATCCTTGGTTGTTTACCCCCCCCAAGGGCGGTGTTTAAAA
ATGGGGAAGTATTTTGTATCCATGGGGGCGGTGGGACTTTTGAATACCAA
GGTCCGGAACGCCTGGTGGAATGTATTTTA
back to top