DY271355

Overview
NameDY271355
Unique NameDY271355
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length819
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1158 contig Ccv1_Contig1158:4..822. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of DY271355 vs. ExPASy Swiss-Prot
Match: SQD1_SPIOL (UDP-sulfoquinovose synthase, chloroplastic OS=Spinacia oleracea GN=SQD1 PE=1 SV=1)

HSP 1 Score: 302.753 bits (774), Expect = 1.560e-81
Identity = 147/180 (81.67%), Postives = 160/180 (88.89%), Query Frame = 1 
Query:    1 VRTD*TAMHEELCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQFTEQFSVNQLAALVTKAGEKLGLDVKTISVPNPRVEAEEHYYNAKHTKLIELGLQPHIXXXXXXXXXXNFAIQFKDRVDSKQIMPSVSWRKIGTKPKTVAA 540
            V T+ TAMHEELCNR DYD VFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPA+ GEFRVFNQFTEQ+SV  LAALVTKAGEKLGL+V+TISVPNPRVEAEEHYYNAKHTKL ELGL+PH+          NFA+Q+KDRVD+KQIMPSVSW+KIG KP+T+ A
Sbjct:  303 VMTEETAMHEELCNRFDYDAVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAKLGEFRVFNQFTEQYSVRDLAALVTKAGEKLGLNVETISVPNPRVEAEEHYYNAKHTKLAELGLKPHLLSDSLLDSVLNFAVQYKDRVDTKQIMPSVSWKKIGVKPQTLRA 482
[Close]
BLAST of DY271355 vs. ExPASy Swiss-Prot
Match: SQD1_ARATH (UDP-sulfoquinovose synthase, chloroplastic OS=Arabidopsis thaliana GN=SQD1 PE=1 SV=1)

HSP 1 Score: 297.36 bits (760), Expect = 6.552e-80
Identity = 144/178 (80.90%), Postives = 158/178 (88.76%), Query Frame = 1 
Query:    1 VRTD*TAMHEELCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQFTEQFSVNQLAALVTKAGEKLGLDVKTISVPNPRVEAEEHYYNAKHTKLIELGLQPHIXXXXXXXXXXNFAIQFKDRVDSKQIMPSVSWRKIGTKPKTV 534
            V+TD T MHEEL NRLDYD VFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVE+AIANPA+ GEFRVFNQFTEQFSVN+LA+LVTKAG KLGLDVK ++VPNPRVEAEEHYYNAKHTKL+ELGL+PH           NFA+QFKDRVD+KQIMPSVSW+KIG K K++
Sbjct:  298 VKTDETEMHEELRNRLDYDAVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVEIAIANPAKAGEFRVFNQFTEQFSVNELASLVTKAGSKLGLDVKKMTVPNPRVEAEEHYYNAKHTKLMELGLEPHYLSDSLLDSLLNFAVQFKDRVDTKQIMPSVSWKKIGVKTKSM 475
The following BLAST results are available for this feature:
BLAST of DY271355 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
SQD1_SPIOL1.560e-8181.67UDP-sulfoquinovose synthase, chloroplastic OS=Spin... [more]
SQD1_ARATH6.552e-8080.90UDP-sulfoquinovose synthase, chloroplastic OS=Arab... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAP9YL05FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY271355 ID=DY271355; Name=DY271355; organism=Citrus clementina; type=EST; length=819bp
GTGAGAACAGATTAGACTGCCATGCATGAAGAACTCTGTAACAGGTTAGA
TTATGATGGGGTGTTTGGGACTGCATTGAATCGGTTTTGTGTTCAAGCTG
CTGTCGGTCATCCGCTTACAGTGTATGGAAAAGGAGGCCAGACTAGAGGT
TACCTTGACATAAGAGATACAGTTCAGTGTGTTGAACTTGCAATTGCAAA
CCCAGCACAGCCCGGTGAATTTCGGGTCTTTAATCAATTCACGGAGCAGT
TTTCTGTCAATCAACTTGCTGCCCTAGTTACAAAAGCAGGAGAGAAGCTT
GGGCTTGACGTAAAAACCATATCTGTTCCCAACCCACGAGTAGAAGCAGA
GGAGCATTATTACAATGCAAAGCACACAAAACTCATTGAGCTGGGACTCC
AACCACACATTCTTTCGGACTCACTTCTTGACTCGTTGCTCAACTTTGCC
ATTCAGTTCAAGGATCGTGTTGACTCAAAACAGATTATGCCCAGTGTTTC
TTGGAGAAAAATTGGAACCAAGCCAAAGACTGTTGCGGCCTAATCAAATA
AACATGGTTGAGAGATTTTGGAATGATAATGAGTGTTTTAATCTCATCGT
CGTCTCTATTGAGTTCTTCTCTTGCTAGGCACCAGAGCACTTTTCAGAAC
TACACCCATAGAGAGGAGTTGTAATCCTAGGGGTTTATGGGCATATGCAA
TTCCCTGCCCCCAATAACATCTGTCTTATGGTCCAGGTCGAATAGCTGTA
TCAAATCCCACTCCTCCCGACTTTGAAGATTTTTGAAATTTATGGAGGTG
CCGTCTGGTTTTTTATTTT
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