DY271358

Overview
NameDY271358
Unique NameDY271358
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1076
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY271358_ssr11 microsatellite DY271358_ssr11:11..20. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of DY271358 vs. ExPASy Swiss-Prot
Match: XPO1_DICDI (Exportin-1 OS=Dictyostelium discoideum GN=xpo1 PE=3 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 5.662e-22
Identity = 46/115 (40.00%), Postives = 60/115 (52.17%), Query Frame = 3
Query:  162 HLTHPTDVALLDPTVAALDGTGSNE-DITAAHHIARDLPNNPEMWLLLMHILRNSKYPSTTFFPLPVLERLIKYRWNSLPAEHRHGMNNYISDLIVRLSC-TEASFREDRHVRHL 500
            +   P D+ LLD  V+ L    SN+ DI AA  +      +P+ W  +  IL  SK   T F  L +++ LIKYRW SLP E   G+ NYI  LI+RLS   + S RE   V  L
Sbjct:    6 NFNEPLDINLLDQIVSVLYNPLSNKNDIKAAQMVLGKFQEHPDAWSKVDTILETSKIVQTKFIALVIMDSLIKYRWKSLPREQCEGIKNYIVSLIIRLSSDPQTSSREKLLVNKL 120          

HSP 2 Score: 51.6026 bits (122), Expect = 5.662e-22
Identity = 26/73 (35.62%), Postives = 44/73 (60.27%), Query Frame = 1
Query:  502 LNIIMIQILKHDCPARWLSFLPDLAAAAKTSETFSEICMATLKLLNVEVFDSS*C*MT*PNISQLKQSLNSGF 720
            LN++ +QILK +    W +F+P++ +++KT+E+  E  M  L+LL+ E+F+ S   MT   I  LK +    F
Sbjct:  120 LNLVFVQILKQEWTTNWSTFIPEIISSSKTNESLCENNMVILRLLSEEIFNFSEEQMTQTKIQTLKITFEKEF 192          
BLAST of DY271358 vs. ExPASy Swiss-Prot
Match: XPO1_SCHPO (Exportin-1 OS=Schizosaccharomyces pombe GN=xpo1 PE=1 SV=3)

HSP 1 Score: 63.1586 bits (152), Expect = 2.025e-19
Identity = 35/103 (33.98%), Postives = 52/103 (50.49%), Query Frame = 3
Query:  180 DVALLDPTVAAL-DGTGSNEDITAAHHIARDLPNNPEMWLLLMHILRNSKYPSTTFFPLPVLERLIKYRWNSLPAEHRHGMNNYISDLIVRLSCTEASFREDR 485
            DVALLD  V     G G+ +    A  +      +P+ W     IL  S+YP T +  L VL++LI  RW  LP E R G+ NYI  ++++ S  E   ++ +
Sbjct:   12 DVALLDRVVQTFYQGVGAEQQ--QAQQVLTQFQAHPDAWSQAYSILEKSEYPQTKYIALSVLDKLITTRWKMLPKEQRLGIRNYIVAVMIKNSSDETVLQQQK 112          

HSP 2 Score: 48.521 bits (114), Expect = 2.025e-19
Identity = 26/73 (35.62%), Postives = 42/73 (57.53%), Query Frame = 1
Query:  502 LNIIMIQILKHDCPARWLSFLPDLAAAAKTSETFSEICMATLKLLNVEVFDSS*C*MT*PNISQLKQSLNSGF 720
            L++ ++QILK + P  W +F+P++  A+KT+ +  E  M  L+LL+ E+FD S   MT      LK  +   F
Sbjct:  118 LDLTLVQILKQEWPHNWPNFIPEIVQASKTNLSLCENNMIVLRLLSEEIFDYSAEQMTQLKTKNLKNQMCGEF 190          

HSP 3 Score: 25.409 bits (54), Expect = 2.025e-19
Identity = 16/47 (34.04%), Postives = 23/47 (48.94%), Query Frame = 3
Query:  726 IQELCCKVRSAPQITRPLRATRSPPDAFPSRKPLGLFFESPIVEATT 866
            I +LC ++    Q    ++AT      F +  PLG  FE+ IVE  T
Sbjct:  193 IFQLCSQILERAQKPSLIKATLGTLLRFLNWIPLGYIFETNIVELIT 239          
BLAST of DY271358 vs. ExPASy Swiss-Prot
Match: XPO1_RAT (Exportin-1 OS=Rattus norvegicus GN=Xpo1 PE=2 SV=1)

HSP 1 Score: 59.6918 bits (143), Expect = 1.595e-17
Identity = 33/82 (40.24%), Postives = 50/82 (60.98%), Query Frame = 1
Query:  475 EKTGMYVI*LNIIMIQILKHDCPARWLSFLPDLAAAAKTSETFSEICMATLKLLNVEVFDSS*C*MT*PNISQLKQSLNSGF 720
            EK  +Y+  LN+I++QILK + P  W +F+ D+  A++TSE+  +  M  LKLL+ EVFD S   +T      LK S+ + F
Sbjct:  121 EKEKVYIGKLNMILVQILKQEWPKHWPTFISDIVGASRTSESLCQNNMVILKLLSEEVFDFSSGQITQVKAKHLKDSMCNEF 202          

HSP 2 Score: 51.2174 bits (121), Expect = 1.595e-17
Identity = 30/93 (32.26%), Postives = 48/93 (51.61%), Query Frame = 3
Query:  180 DVALLDPTVAAL-DGTGSNEDITAAHHIARDLPNNPEMWLLLMHILRNSKYPSTTFFPLPVLERLIKYRWNSLPAEHRHGMNNYISDLIVRLS 455
            D+ LLD  V  L  G G+ + +  A  +   L  +P+ W  +  IL  S+  +T ++ L +LE +IK RW  LP     G+  Y+  LI++ S
Sbjct:   24 DINLLDNVVNCLYHGEGAQQRM--AQEVLTHLKEHPDAWTRVDTILEFSQNMNTKYYGLQILENVIKTRWKILPRNQCEGIKKYVVGLIIKTS 114          
BLAST of DY271358 vs. ExPASy Swiss-Prot
Match: XPO1_MOUSE (Exportin-1 OS=Mus musculus GN=Xpo1 PE=1 SV=1)

HSP 1 Score: 59.6918 bits (143), Expect = 1.595e-17
Identity = 33/82 (40.24%), Postives = 50/82 (60.98%), Query Frame = 1
Query:  475 EKTGMYVI*LNIIMIQILKHDCPARWLSFLPDLAAAAKTSETFSEICMATLKLLNVEVFDSS*C*MT*PNISQLKQSLNSGF 720
            EK  +Y+  LN+I++QILK + P  W +F+ D+  A++TSE+  +  M  LKLL+ EVFD S   +T      LK S+ + F
Sbjct:  121 EKEKVYIGKLNMILVQILKQEWPKHWPTFISDIVGASRTSESLCQNNMVILKLLSEEVFDFSSGQITQVKAKHLKDSMCNEF 202          

HSP 2 Score: 51.2174 bits (121), Expect = 1.595e-17
Identity = 30/93 (32.26%), Postives = 48/93 (51.61%), Query Frame = 3
Query:  180 DVALLDPTVAAL-DGTGSNEDITAAHHIARDLPNNPEMWLLLMHILRNSKYPSTTFFPLPVLERLIKYRWNSLPAEHRHGMNNYISDLIVRLS 455
            D+ LLD  V  L  G G+ + +  A  +   L  +P+ W  +  IL  S+  +T ++ L +LE +IK RW  LP     G+  Y+  LI++ S
Sbjct:   24 DINLLDNVVNCLYHGEGAQQRM--AQEVLTHLKEHPDAWTRVDTILEFSQNMNTKYYGLQILENVIKTRWKILPRNQCEGIKKYVVGLIIKTS 114          
BLAST of DY271358 vs. ExPASy Swiss-Prot
Match: XPO1_HUMAN (Exportin-1 OS=Homo sapiens GN=XPO1 PE=1 SV=1)

HSP 1 Score: 59.3066 bits (142), Expect = 2.073e-17
Identity = 33/82 (40.24%), Postives = 50/82 (60.98%), Query Frame = 1
Query:  475 EKTGMYVI*LNIIMIQILKHDCPARWLSFLPDLAAAAKTSETFSEICMATLKLLNVEVFDSS*C*MT*PNISQLKQSLNSGF 720
            EK  +Y+  LN+I++QILK + P  W +F+ D+  A++TSE+  +  M  LKLL+ EVFD S   +T      LK S+ + F
Sbjct:  121 EKEKVYIGKLNMILVQILKQEWPKHWPTFISDIVGASRTSESLCQNNMVILKLLSEEVFDFSSGQITQVKSKHLKDSMCNEF 202          

HSP 2 Score: 51.2174 bits (121), Expect = 2.073e-17
Identity = 30/93 (32.26%), Postives = 48/93 (51.61%), Query Frame = 3
Query:  180 DVALLDPTVAAL-DGTGSNEDITAAHHIARDLPNNPEMWLLLMHILRNSKYPSTTFFPLPVLERLIKYRWNSLPAEHRHGMNNYISDLIVRLS 455
            D+ LLD  V  L  G G+ + +  A  +   L  +P+ W  +  IL  S+  +T ++ L +LE +IK RW  LP     G+  Y+  LI++ S
Sbjct:   24 DINLLDNVVNCLYHGEGAQQRM--AQEVLTHLKEHPDAWTRVDTILEFSQNMNTKYYGLQILENVIKTRWKILPRNQCEGIKKYVVGLIIKTS 114          
BLAST of DY271358 vs. ExPASy Swiss-Prot
Match: XPO1_YEAST (Exportin-1 OS=Saccharomyces cerevisiae GN=CRM1 PE=1 SV=1)

HSP 1 Score: 58.9214 bits (141), Expect = 1.689e-16
Identity = 31/104 (29.81%), Postives = 53/104 (50.96%), Query Frame = 3
Query:  180 DVALLDPTVAALDGTGSNEDITAAHHIARDLPNNPEMWLLLMHILRNSKYPSTTFFPLPVLERLIKYRWNSLPAEHRHGMNNYISDLIVRLSCTEASFREDRHV 491
            D+ALLD  V+     GS      A  I     +NP+ W     IL+ S  P + F  L +L++LI  +W  LP +HR G+ N++  +I+ +   +  F+  +++
Sbjct:   12 DIALLDQVVSTFY-QGSGVQQKQAQEILTKFQDNPDAWQKADQILQFSTNPQSKFIALSILDKLITRKWKLLPNDHRIGIRNFVVGMIISMCQDDEVFKTQKNL 114          

HSP 2 Score: 48.521 bits (114), Expect = 1.689e-16
Identity = 27/72 (37.50%), Postives = 40/72 (55.56%), Query Frame = 1
Query:  505 NIIMIQILKHDCPARWLSFLPDLAAAAKTSETFSEICMATLKLLNVEVFDSS*C*MT*PNISQLKQSLNSGF 720
            ++ ++QILK + P  W  F+P+L  ++ +S    E  M  LKLL+ EVFD S   MT      LK S++  F
Sbjct:  119 DLTLVQILKQEWPQNWPEFIPELIGSSSSSVNVCENNMIVLKLLSEEVFDFSAEQMTQAKALHLKNSMSKEF 190          
The following BLAST results are available for this feature:
BLAST of DY271358 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
XPO1_DICDI5.662e-2240.00Exportin-1 OS=Dictyostelium discoideum GN=xpo1 PE=... [more]
XPO1_SCHPO2.025e-1933.98Exportin-1 OS=Schizosaccharomyces pombe GN=xpo1 PE... [more]
XPO1_RAT1.595e-1740.24Exportin-1 OS=Rattus norvegicus GN=Xpo1 PE=2 SV=1[more]
XPO1_MOUSE1.595e-1740.24Exportin-1 OS=Mus musculus GN=Xpo1 PE=1 SV=1[more]
XPO1_HUMAN2.073e-1740.24Exportin-1 OS=Homo sapiens GN=XPO1 PE=1 SV=1[more]
XPO1_YEAST1.689e-1629.81Exportin-1 OS=Saccharomyces cerevisiae GN=CRM1 PE=... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAP9YL09FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY271358 ID=DY271358; Name=DY271358; organism=Citrus clementina; type=EST; length=1076bp
TTTCCCTCAACTCTCTCTCTAGAAAATCCATCTTTACCTTTTTCTCACTC
TGATGGTTTGGACCGTACGCTACTCTTAAGGTTTTATTACCGGACCTTTT
TCGGACACCGTGTGGTAGAGCCGTGTCTGATGTTTCAAAAATGGGCGCTG
AGATGCACCGACATCTAACCCATCCAACGGACGTCGCGTTGCTTGACCCC
ACTGTTGCTGCCCTCGATGGCACTGGATCTAATGAAGATATAACTGCTGC
ACATCATATCGCGCGGGACTTGCCTAATAATCCTGAGATGTGGCTCCTAC
TTATGCACATCCTGCGAAATTCCAAATACCCCTCCACCACATTTTTCCCC
TTGCCTGTTCTCGAACGACTTATTAAGTATAGGTGGAACTCATTACCCGC
TGAACACCGACACGGAATGAACAATTACATTTCTGATCTCATTGTACGGC
TATCATGTACTGAGGCCTCTTTTCGAGAAGACAGGCATGTACGTCATCTA
GCTGAATATCATAATGATTCAGATTTTGAAGCATGATTGCCCTGCACGGT
GGCTAAGCTTTCTTCCTGATCTTGCTGCAGCAGCAAAAACGAGTGAAACC
TTTAGTGAGATCTGCATGGCTACTCTCAAGCTATTGAACGTAGAAGTTTT
TGACTCTTCTTGATGCTAAATGACCTGACCAAACATTAGCCAACTTAAGC
AATCCTTAAACAGTGGGTTTCTCTGATTCAAGAGTTATGCTGTAAAGTAC
GATCGGCCCCCCAGATAACTCGACCCCTAAGGGCCACCCGGTCCCCCCCG
GATGCCTTCCCCTCCAGGAAACCCCTGGGACTCTTTTTCGAGTCCCCAAT
AGTGGAAGCCACGACTGAAATTCTTCCCCCCGCCTTTCTAAAAAAACCTA
ACTCTTCAATGTTTACGGGAGGGTGAAAACCCTTAATTTTTGTGCCCTTC
CCCACAGGGGCAATAAAATTGAACACGGAGAAAAGGTGTTCCGGGGTAAC
TATCCACACCTTTTTTCCCCCCCAACAAAAAACCTCCCCCTAAATCTATA
GCCCCGGGGGCGTAAAGAAGAAAAAA
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