DY271359

Overview
NameDY271359
Unique NameDY271359
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1066
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY271359_ssr863 microsatellite DY271359_ssr863:863..872. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
[Close]
BLAST of DY271359 vs. ExPASy Swiss-Prot
Match: ARF_VIGUN (ADP-ribosylation factor OS=Vigna unguiculata GN=ARF PE=2 SV=3)

HSP 1 Score: 299.286 bits (765), Expect = 5.487e-92
Identity = 150/150 (100.00%), Postives = 150/150 (100.00%), Query Frame = 2 
Query:   47 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQ 496
            MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQ
Sbjct:    1 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQ 150

HSP 2 Score: 61.2326 bits (147), Expect = 5.487e-92
Identity = 26/32 (81.25%), Postives = 30/32 (93.75%), Query Frame = 3 
Query:  495 KRHWYIQSTCATSGEGLQEGLDWLSNHIAYRA 590
            +RHWYIQSTCATSGEGL EGL+WLSN+IA +A
Sbjct:  150 QRHWYIQSTCATSGEGLYEGLEWLSNNIASKA 181
[Close]
BLAST of DY271359 vs. ExPASy Swiss-Prot
Match: ARF2_ARATH (ADP-ribosylation factor 2 OS=Arabidopsis thaliana GN=ARF2-A PE=2 SV=3)

HSP 1 Score: 297.36 bits (760), Expect = 9.339e-92
Identity = 149/150 (99.33%), Postives = 149/150 (99.33%), Query Frame = 2 
Query:   47 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQ 496
            MGLSF KLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQ
Sbjct:    1 MGLSFAKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQ 150

HSP 2 Score: 62.3882 bits (150), Expect = 9.339e-92
Identity = 27/32 (84.38%), Postives = 30/32 (93.75%), Query Frame = 3 
Query:  495 KRHWYIQSTCATSGEGLQEGLDWLSNHIAYRA 590
            +RHWYIQSTCATSGEGL EGLDWLSN+IA +A
Sbjct:  150 QRHWYIQSTCATSGEGLYEGLDWLSNNIAGKA 181
[Close]
BLAST of DY271359 vs. ExPASy Swiss-Prot
Match: ARF2_ORYSJ (ADP-ribosylation factor 2 OS=Oryza sativa subsp. japonica GN=ARF PE=2 SV=2)

HSP 1 Score: 296.59 bits (758), Expect = 1.218e-91
Identity = 148/150 (98.67%), Postives = 150/150 (100.00%), Query Frame = 2 
Query:   47 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQ 496
            MGL+FTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR+RVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQ
Sbjct:    1 MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQ 150

HSP 2 Score: 62.7734 bits (151), Expect = 1.218e-91
Identity = 27/32 (84.38%), Postives = 30/32 (93.75%), Query Frame = 3 
Query:  495 KRHWYIQSTCATSGEGLQEGLDWLSNHIAYRA 590
            +RHWYIQSTCATSGEGL EGLDWLSN+IA +A
Sbjct:  150 QRHWYIQSTCATSGEGLYEGLDWLSNNIANKA 181
[Close]
BLAST of DY271359 vs. ExPASy Swiss-Prot
Match: ARF1_ORYSJ (ADP-ribosylation factor 1 OS=Oryza sativa subsp. japonica GN=Os01g0813400 PE=2 SV=3)

HSP 1 Score: 296.59 bits (758), Expect = 1.218e-91
Identity = 148/150 (98.67%), Postives = 150/150 (100.00%), Query Frame = 2 
Query:   47 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQ 496
            MGL+FTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR+RVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQ
Sbjct:    1 MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQ 150

HSP 2 Score: 62.7734 bits (151), Expect = 1.218e-91
Identity = 27/32 (84.38%), Postives = 30/32 (93.75%), Query Frame = 3 
Query:  495 KRHWYIQSTCATSGEGLQEGLDWLSNHIAYRA 590
            +RHWYIQSTCATSGEGL EGLDWLSN+IA +A
Sbjct:  150 QRHWYIQSTCATSGEGLYEGLDWLSNNIASKA 181
[Close]
BLAST of DY271359 vs. ExPASy Swiss-Prot
Match: ARF1_ARATH (ADP-ribosylation factor 1 OS=Arabidopsis thaliana GN=ARF1 PE=1 SV=2)

HSP 1 Score: 296.59 bits (758), Expect = 1.218e-91
Identity = 149/150 (99.33%), Postives = 149/150 (99.33%), Query Frame = 2 
Query:   47 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQ 496
            MGLSF KLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQ
Sbjct:    1 MGLSFGKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQ 150

HSP 2 Score: 62.7734 bits (151), Expect = 1.218e-91
Identity = 27/32 (84.38%), Postives = 30/32 (93.75%), Query Frame = 3 
Query:  495 KRHWYIQSTCATSGEGLQEGLDWLSNHIAYRA 590
            +RHWYIQSTCATSGEGL EGLDWLSN+IA +A
Sbjct:  150 QRHWYIQSTCATSGEGLYEGLDWLSNNIASKA 181
[Close]
BLAST of DY271359 vs. ExPASy Swiss-Prot
Match: ARF1_DAUCA (ADP-ribosylation factor 1 OS=Daucus carota GN=ARF1 PE=2 SV=2)

HSP 1 Score: 296.975 bits (759), Expect = 2.073e-91
Identity = 149/150 (99.33%), Postives = 149/150 (99.33%), Query Frame = 2 
Query:   47 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQ 496
            MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEI DKLGLHSLRQ
Sbjct:    1 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEIIDKLGLHSLRQ 150

HSP 2 Score: 61.6178 bits (148), Expect = 2.073e-91
Identity = 26/32 (81.25%), Postives = 30/32 (93.75%), Query Frame = 3 
Query:  495 KRHWYIQSTCATSGEGLQEGLDWLSNHIAYRA 590
            +RHWYIQSTCATSGEGL EGLDWLSN+IA ++
Sbjct:  150 QRHWYIQSTCATSGEGLYEGLDWLSNNIASKS 181
[Close]
BLAST of DY271359 vs. ExPASy Swiss-Prot
Match: ARF_MAIZE (ADP-ribosylation factor OS=Zea mays GN=ARF1 PE=2 SV=2)

HSP 1 Score: 295.434 bits (755), Expect = 5.036e-90
Identity = 148/150 (98.67%), Postives = 150/150 (100.00%), Query Frame = 2 
Query:   47 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQ 496
            MGL+FTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGL+SLRQ
Sbjct:    1 MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLNSLRQ 150

HSP 2 Score: 58.5362 bits (140), Expect = 5.036e-90
Identity = 24/32 (75.00%), Postives = 30/32 (93.75%), Query Frame = 3 
Query:  495 KRHWYIQSTCATSGEGLQEGLDWLSNHIAYRA 590
            +RHWYIQSTCAT+GEGL EGLDWLS++IA ++
Sbjct:  150 QRHWYIQSTCATTGEGLYEGLDWLSSNIATKS 181
[Close]
BLAST of DY271359 vs. ExPASy Swiss-Prot
Match: ARF1_SALBA (ADP-ribosylation factor 1 OS=Salix bakko GN=ARF1 PE=2 SV=3)

HSP 1 Score: 291.582 bits (745), Expect = 8.570e-90
Identity = 146/150 (97.33%), Postives = 147/150 (98.00%), Query Frame = 2 
Query:   47 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQ 496
            MGLSFTKL  RLF+KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRV EARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQ
Sbjct:    1 MGLSFTKLLGRLFSKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVGEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQ 150

HSP 2 Score: 61.6178 bits (148), Expect = 8.570e-90
Identity = 26/32 (81.25%), Postives = 30/32 (93.75%), Query Frame = 3 
Query:  495 KRHWYIQSTCATSGEGLQEGLDWLSNHIAYRA 590
            +RHWYIQSTCATSGEGL EGLDWLSN+I+ +A
Sbjct:  150 QRHWYIQSTCATSGEGLYEGLDWLSNNISSKA 181
[Close]
BLAST of DY271359 vs. ExPASy Swiss-Prot
Match: ARF1_CATRO (ADP-ribosylation factor 1 OS=Catharanthus roseus GN=ARF1 PE=2 SV=3)

HSP 1 Score: 290.426 bits (742), Expect = 8.570e-90
Identity = 146/150 (97.33%), Postives = 148/150 (98.67%), Query Frame = 2 
Query:   47 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQ 496
            MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILY+LKLGEIVTTIPTIGFNVETVEY+ ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDK GLHSLRQ
Sbjct:    1 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYQLKLGEIVTTIPTIGFNVETVEYQYISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKHGLHSLRQ 150

HSP 2 Score: 62.7734 bits (151), Expect = 8.570e-90
Identity = 27/32 (84.38%), Postives = 30/32 (93.75%), Query Frame = 3 
Query:  495 KRHWYIQSTCATSGEGLQEGLDWLSNHIAYRA 590
            +RHWYIQSTCATSGEGL EGLDWLSN+IA +A
Sbjct:  150 QRHWYIQSTCATSGEGLYEGLDWLSNNIANKA 181
[Close]
BLAST of DY271359 vs. ExPASy Swiss-Prot
Match: ARF1_CHLRE (ADP-ribosylation factor 1 OS=Chlamydomonas reinhardtii GN=ARF1 PE=2 SV=2)

HSP 1 Score: 290.041 bits (741), Expect = 5.509e-89
Identity = 145/150 (96.67%), Postives = 146/150 (97.33%), Query Frame = 2 
Query:   47 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQ 496
            MGL FTK  SRLF KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR+RVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQ
Sbjct:    1 MGLRFTKALSRLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQ 150

HSP 2 Score: 60.4622 bits (145), Expect = 5.509e-89
Identity = 25/29 (86.21%), Postives = 28/29 (96.55%), Query Frame = 3 
Query:  495 KRHWYIQSTCATSGEGLQEGLDWLSNHIA 581
            +RHWYIQSTCATSGEGL EGLDWLSN++A
Sbjct:  150 QRHWYIQSTCATSGEGLYEGLDWLSNNLA 178
The following BLAST results are available for this feature:
BLAST of DY271359 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 217
Match NameE-valueIdentityDescription
ARF_VIGUN5.487e-92100.00ADP-ribosylation factor OS=Vigna unguiculata GN=AR... [more]
ARF2_ARATH9.339e-9299.33ADP-ribosylation factor 2 OS=Arabidopsis thaliana ... [more]
ARF2_ORYSJ1.218e-9198.67ADP-ribosylation factor 2 OS=Oryza sativa subsp. j... [more]
ARF1_ORYSJ1.218e-9198.67ADP-ribosylation factor 1 OS=Oryza sativa subsp. j... [more]
ARF1_ARATH1.218e-9199.33ADP-ribosylation factor 1 OS=Arabidopsis thaliana ... [more]
ARF1_DAUCA2.073e-9199.33ADP-ribosylation factor 1 OS=Daucus carota GN=ARF1... [more]
ARF_MAIZE5.036e-9098.67ADP-ribosylation factor OS=Zea mays GN=ARF1 PE=2 S... [more]
ARF1_SALBA8.570e-9097.33ADP-ribosylation factor 1 OS=Salix bakko GN=ARF1 P... [more]
ARF1_CATRO8.570e-9097.33ADP-ribosylation factor 1 OS=Catharanthus roseus G... [more]
ARF1_CHLRE5.509e-8996.67ADP-ribosylation factor 1 OS=Chlamydomonas reinhar... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP9YL10FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY271359 ID=DY271359; Name=DY271359; organism=Citrus clementina; type=EST; length=1066bp
TTCCCTTAAGTTGCCTCCTCCTTCAGATCTCGTGAGATAACAGAAAATGG
GGCTGTCATTTACGAAGCTTTTTAGCCGGCTTTTTGCCAAGAAAGAGATG
CGAATTCTGATGGTGGGTCTCGACGCTGCTGGTAAGACCACCATTTTGTA
CAAGCTCAAGCTCGGTGAGATTGTGACAACCATTCCTACCATTGGTTTCA
ACGTGGAGACTGTGGAATATAAGAACATTAGCTTCACTGTTTGGGATGTT
GGGGGTCAGGATAAGATTCGTCCTTTGTGGAGACATTACTTCCAAAACAC
TCAAGGGCTTATCTTTGTGGTTGATAGCAATGATCGTGACCGTGTGGTTG
AAGCTAGAGATGAACTGCACCGGATGCTGAATGAGGATGAGTTGAGGGAT
GCTGTGCTGCTTGTTTTTGCCAACAAGCAAGATCTTCCAAATGCCATGAA
TGCTGCAGAGATCACTGATAAGCTTGGTCTTCACTCACTTCGTCAAACGC
CACTGGTACATCCAGAGCACATGTGCCACATCTGGGGAAGGACTCCAGGA
GGGTCTGGACTGGCTCTCCAACCACATCGCCTACAGGGCTTAGGTGATTG
GTCCAGTCTGAACCACTCCCTTTGCGGCAGCCTCCAAGTGAATGAAGTTA
CTATGCTTTTGTTTTATTTTGCCGGGGATTCTTTTTGGGGCTTTCCCACC
TCCGTTCAGTGAAATGGAATTTGTTTGCGGTGGGTTTTTGAATGGTACCA
ATACATATAGGTTTTCCGCCTTGGCAACTGGAAGTTTCAACTTCCCCCGA
TAACTCGAACTTACGGGTTTTTTTGGGCGGGTGATAAAAAACAGAAAAGG
AAAACCGACAGCCACACACACACCAACACGCCTCACCAAACATCGCCCCT
CTTCCCCGCTCCCGCTCGTCTCGACATAAAAGCATCCTCTAATCTCTCTC
CTCGTACAAACATCCAAAGCTCCAGTAGACATCACTCCTTGCACCCCCGC
TACATATGTATTTCCTTCGAAGGTACTATCATGGCACACACATCTCCCAA
CTCTACTAACACAACA
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